laminark 0.1.0

package/plugin/ui/graph.js

@@ -0,0 +1,2560 @@
+/**
+ * Laminark Knowledge Graph Visualization (D3.js)
+ *
+ * Renders the knowledge graph as an interactive D3.js force-directed SVG.
+ * Entities appear as colored/shaped nodes by type. Relationships render as
+ * labeled directed edges. Level-of-detail reduces visual complexity at low
+ * zoom levels. Force-collide prevents the hairball problem.
+ *
+ * @module graph
+ */
+
+// ---------------------------------------------------------------------------
+// Debounce utility
+// ---------------------------------------------------------------------------
+
+function debounce(fn, ms) {
+  var timer;
+  return function () { clearTimeout(timer); timer = setTimeout(fn, ms); };
+}
+
+// ---------------------------------------------------------------------------
+// Entity type visual map
+// ---------------------------------------------------------------------------
+
+const ENTITY_STYLES = {
+  Project:   { color: '#58a6ff', shape: 'round-rectangle' },
+  File:      { color: '#3fb950', shape: 'rectangle' },
+  Decision:  { color: '#d29922', shape: 'diamond' },
+  Problem:   { color: '#f85149', shape: 'triangle' },
+  Solution:  { color: '#a371f7', shape: 'star' },
+  Reference: { color: '#f0883e', shape: 'hexagon' },
+};
+
+// Pathfinder highlight color
+var PATHFINDER_COLOR = '#f0883e';
+
+// Relationship type colors for edge coloring
+var EDGE_TYPE_COLORS = {
+  related_to: '#8b949e',
+  solved_by: '#3fb950',
+  caused_by: '#f85149',
+  modifies: '#58a6ff',
+  informed_by: '#d2a8ff',
+  references: '#f0883e',
+  verified_by: '#d29922',
+  preceded_by: '#79c0ff',
+};
+
+// ---------------------------------------------------------------------------
+// D3 symbol generators per entity type
+// ---------------------------------------------------------------------------
+
+var nodeSizeScale = d3.scaleSqrt().domain([0, 50]).range([15, 40]).clamp(true);
+var degreeSizeScale = d3.scaleSqrt().domain([0, 20]).range([0, 20]).clamp(true);
+
+function getNodeSize(d) {
+  var base = nodeSizeScale(d.observationCount || 0);
+  var degreeBonus = degreeSizeScale(d._degree || 0);
+  return base + degreeBonus;
+}
+
+// Custom hexagon symbol
+var hexagonSymbol = {
+  draw: function (context, size) {
+    var r = Math.sqrt(size / (1.5 * Math.sqrt(3)));
+    for (var i = 0; i < 6; i++) {
+      var angle = (Math.PI / 3) * i - Math.PI / 2;
+      var x = r * Math.cos(angle);
+      var y = r * Math.sin(angle);
+      if (i === 0) context.moveTo(x, y);
+      else context.lineTo(x, y);
+    }
+    context.closePath();
+  }
+};
+
+// Custom rounded rectangle symbol
+var roundRectSymbol = {
+  draw: function (context, size) {
+    var s = Math.sqrt(size) * 0.9;
+    var r = s * 0.2;
+    var hs = s / 2;
+    context.moveTo(-hs + r, -hs);
+    context.lineTo(hs - r, -hs);
+    context.quadraticCurveTo(hs, -hs, hs, -hs + r);
+    context.lineTo(hs, hs - r);
+    context.quadraticCurveTo(hs, hs, hs - r, hs);
+    context.lineTo(-hs + r, hs);
+    context.quadraticCurveTo(-hs, hs, -hs, hs - r);
+    context.lineTo(-hs, -hs + r);
+    context.quadraticCurveTo(-hs, -hs, -hs + r, -hs);
+    context.closePath();
+  }
+};
+
+function getSymbolType(type) {
+  switch (type) {
+    case 'Project': return roundRectSymbol;
+    case 'File': return d3.symbolSquare;
+    case 'Decision': return d3.symbolDiamond;
+    case 'Problem': return d3.symbolTriangle;
+    case 'Solution': return d3.symbolStar;
+    case 'Reference': return hexagonSymbol;
+    default: return d3.symbolCircle;
+  }
+}
+
+function getSymbolPath(type, size) {
+  var area = size * size * 2.5;
+  return d3.symbol().type(getSymbolType(type)).size(area)();
+}
+
+// ---------------------------------------------------------------------------
+// Module state
+// ---------------------------------------------------------------------------
+
+var svg = null;
+var svgG = null; // Main group that receives zoom transforms
+var simulation = null;
+var zoomBehavior = null;
+var containerEl = null;
+
+// Data arrays (the simulation operates on these directly)
+var nodeData = [];
+var edgeData = [];
+
+// D3 selections
+var edgeSelection = null;
+var edgeLabelSelection = null;
+var nodeGroupSelection = null;
+var nodeLabelSelection = null;
+
+// Layer groups
+var edgesGroup = null;
+var edgeLabelsGroup = null;
+var nodesGroup = null;
+var nodeLabelsGroup = null;
+
+var activeEntityTypes = new Set(Object.keys(ENTITY_STYLES));
+
+// Level-of-detail state
+var currentLodLevel = 0;
+var currentZoom = 1;
+
+// Performance stats overlay state
+var perfOverlayVisible = false;
+var perfOverlayEl = null;
+var perfFrameCount = 0;
+var perfLastFpsTime = 0;
+var perfFps = 0;
+var perfRafId = null;
+
+// Focus mode state
+var focusStack = [];
+var isFocusMode = false;
+var cachedFullData = null;
+
+// Current layout setting
+var currentLayout = localStorage.getItem('laminark-layout') || 'clustered';
+var isStaticLayout = false; // True when using hierarchical/concentric (no simulation)
+
+// Batch update queue for SSE events
+var batchQueue = [];
+var batchFlushTimer = null;
+var BATCH_DELAY_MS = 200;
+
+// Context menu state
+var contextMenuEl = null;
+var contextMenuVisible = false;
+var contextMenuTargetNode = null;
+
+// Time range state
+var activeTimeRange = { from: null, to: null };
+
+// Selected node
+var selectedNodeId = null;
+
+// Tooltip element
+var tooltipEl = null;
+
+// Community data
+var communityNodeMap = {};
+var communityColorMap = {};
+
+// Edge label visibility (per-type)
+var edgeLabelsVisible = localStorage.getItem('laminark-edge-labels') !== 'false';
+var hiddenEdgeLabelTypes = new Set(
+  JSON.parse(localStorage.getItem('laminark-hidden-edge-types') || '[]')
+);
+
+// Pathfinder state
+var pathfinderActive = false;
+var pathfinderSelection = []; // Max 2 node IDs: [startId, endId]
+var pathfinderResult = null; // { nodeIds: Set, edgeIds: Set, path: [{nodeId, edgeId}] }
+var pathfinderInfoEl = null;
+
+// Graph freeze state (suppresses SSE-driven refreshes)
+var graphFrozen = false;
+var graphStale = false;
+var syncBtnEl = null;
+var freezeBtnEl = null;
+
+// ---------------------------------------------------------------------------
+// initGraph
+// ---------------------------------------------------------------------------
+
+function initGraph(containerId) {
+  containerEl = document.getElementById(containerId);
+  if (!containerEl) {
+    console.error('[laminark:graph] Container not found:', containerId);
+    return null;
+  }
+
+  // Clear any previous content
+  containerEl.innerHTML = '';
+
+  var width = containerEl.clientWidth || 800;
+  var height = containerEl.clientHeight || 600;
+
+  svg = d3.select(containerEl)
+    .append('svg')
+    .attr('width', '100%')
+    .attr('height', '100%')
+    .attr('viewBox', [0, 0, width, height].join(' '))
+    .attr('class', 'graph-svg');
+
+  // Arrow marker definitions (one per edge type color)
+  var defs = svg.append('defs');
+  var markerColors = {};
+  Object.keys(EDGE_TYPE_COLORS).forEach(function (k) { markerColors[k] = EDGE_TYPE_COLORS[k]; });
+  markerColors['default'] = '#8b949e';
+
+  Object.keys(markerColors).forEach(function (key) {
+    defs.append('marker')
+      .attr('id', 'arrow-' + key)
+      .attr('viewBox', '0 -5 10 10')
+      .attr('refX', 10)
+      .attr('refY', 0)
+      .attr('markerWidth', 8)
+      .attr('markerHeight', 8)
+      .attr('orient', 'auto')
+      .append('path')
+      .attr('d', 'M0,-4L10,0L0,4')
+      .attr('fill', markerColors[key]);
+  });
+
+  // Main zoom group
+  svgG = svg.append('g').attr('class', 'graph-zoom-group');
+
+  // Layer groups in paint order (back to front)
+  edgesGroup = svgG.append('g').attr('class', 'edges-group');
+  edgeLabelsGroup = svgG.append('g').attr('class', 'edge-labels-group');
+  nodesGroup = svgG.append('g').attr('class', 'nodes-group');
+  nodeLabelsGroup = svgG.append('g').attr('class', 'node-labels-group');
+
+  // Zoom behavior
+  zoomBehavior = d3.zoom()
+    .scaleExtent([0.1, 3.0])
+    .on('zoom', function (event) {
+      svgG.attr('transform', event.transform);
+      currentZoom = event.transform.k;
+      updateLevelOfDetail();
+    });
+  svg.call(zoomBehavior);
+
+  // Background click: deselect + hide detail panel + clear pathfinder
+  svg.on('click', function (event) {
+    if (event.target === svg.node() || event.target.closest('.graph-zoom-group') === svgG.node() && !event.target.closest('.node-group')) {
+      hideDetailPanel();
+      selectedNodeId = null;
+      if (nodesGroup) nodesGroup.selectAll('.node-group').classed('selected', false);
+      clearPathfinder();
+    }
+  });
+
+  // Right-click on background
+  svg.on('contextmenu', function (event) {
+    event.preventDefault();
+    // Check if click is on a node
+    var nodeGroup = event.target.closest('.node-group');
+    if (nodeGroup) return; // Handled by node's own contextmenu handler
+
+    contextMenuTargetNode = null;
+    var items = [
+      { type: 'header', label: 'Filter' },
+      { type: 'item', label: 'Reset filters (show all)', action: 'reset-filters' },
+      { type: 'divider' },
+      { type: 'header', label: 'Arrange' },
+      { type: 'item', label: 'Re-layout graph', action: 'relayout' },
+      { type: 'item', label: 'Fit to view', action: 'fit' },
+    ];
+    showContextMenu(event.pageX, event.pageY, items);
+  });
+
+  // Performance stats keyboard shortcut: Ctrl+Shift+P
+  document.addEventListener('keydown', function (e) {
+    if (e.ctrlKey && e.shiftKey && e.key === 'P') {
+      e.preventDefault();
+      togglePerfOverlay();
+    }
+  });
+
+  initContextMenu();
+  initEdgeLabelToggle();
+  initPathfinderToggle();
+  initFreezeButton();
+  initSyncButton();
+
+  // Create tooltip element
+  tooltipEl = document.createElement('div');
+  tooltipEl.className = 'graph-tooltip hidden';
+  containerEl.appendChild(tooltipEl);
+
+  console.log('[laminark:graph] D3 initialized with force simulation');
+  return svg;
+}
+
+// ---------------------------------------------------------------------------
+// Resolve edge source/target from string IDs to node object references
+// ---------------------------------------------------------------------------
+
+function resolveEdgeReferences() {
+  var nodeMap = {};
+  nodeData.forEach(function (d) { nodeMap[d.id] = d; });
+  edgeData.forEach(function (d) {
+    if (typeof d.source === 'string') d.source = nodeMap[d.source] || d.source;
+    if (typeof d.target === 'string') d.target = nodeMap[d.target] || d.target;
+  });
+}
+
+// ---------------------------------------------------------------------------
+// Force simulation setup
+// ---------------------------------------------------------------------------
+
+function computeDegrees() {
+  var degreeMap = {};
+  edgeData.forEach(function (d) {
+    var srcId = typeof d.source === 'object' ? d.source.id : d.source;
+    var tgtId = typeof d.target === 'object' ? d.target.id : d.target;
+    degreeMap[srcId] = (degreeMap[srcId] || 0) + 1;
+    degreeMap[tgtId] = (degreeMap[tgtId] || 0) + 1;
+  });
+  nodeData.forEach(function (d) {
+    d._degree = degreeMap[d.id] || 0;
+  });
+}
+
+function createSimulation() {
+  if (simulation) simulation.stop();
+
+  computeDegrees();
+
+  var width = containerEl ? containerEl.clientWidth : 800;
+  var height = containerEl ? containerEl.clientHeight : 600;
+
+  var simNodeIds = new Set(nodeData.filter(function (d) { return !d.hidden; }).map(function (d) { return d.id; }));
+  var visibleEdges = edgeData.filter(function (d) {
+    var srcId = typeof d.source === 'object' ? d.source.id : d.source;
+    var tgtId = typeof d.target === 'object' ? d.target.id : d.target;
+    return simNodeIds.has(srcId) && simNodeIds.has(tgtId);
+  });
+
+  // Degree-scaled repulsion: more links = stronger push away
+  var chargeScale = d3.scaleLinear().domain([0, 20]).range([-200, -1200]).clamp(true);
+
+  simulation = d3.forceSimulation(nodeData.filter(function (d) { return !d.hidden; }))
+    .force('link', d3.forceLink(visibleEdges)
+      .id(function (d) { return d.id; })
+      .distance(function (d) {
+        // Longer links between high-degree nodes so they spread out
+        var srcDeg = (typeof d.source === 'object' ? d.source._degree : 0) || 0;
+        var tgtDeg = (typeof d.target === 'object' ? d.target._degree : 0) || 0;
+        return 100 + Math.sqrt(srcDeg + tgtDeg) * 20;
+      }))
+    .force('charge', d3.forceManyBody().strength(function (d) {
+      return chargeScale(d._degree || 0);
+    }))
+    .force('center', d3.forceCenter(width / 2, height / 2))
+    .force('collide', d3.forceCollide().radius(function (d) {
+      return getNodeSize(d) + 12;
+    }).strength(0.8))
+    .force('x', d3.forceX(width / 2).strength(0.03))
+    .force('y', d3.forceY(height / 2).strength(0.03))
+    .alphaDecay(0.02)
+    .velocityDecay(0.35)
+    .on('tick', ticked);
+}
+
+function ticked() {
+  if (edgeSelection) {
+    edgeSelection
+      .attr('x1', function (d) { return (d.source && d.source.x) || 0; })
+      .attr('y1', function (d) { return (d.source && d.source.y) || 0; })
+      .attr('x2', function (d) {
+        if (!d.source || !d.target || d.source.x == null || d.target.x == null) return 0;
+        return shortenLine(d.source, d.target, getNodeSize(d.target) + 5).x;
+      })
+      .attr('y2', function (d) {
+        if (!d.source || !d.target || d.source.y == null || d.target.y == null) return 0;
+        return shortenLine(d.source, d.target, getNodeSize(d.target) + 5).y;
+      });
+  }
+
+  if (edgeLabelSelection) {
+    edgeLabelSelection
+      .attr('x', function (d) { var sx = (d.source && d.source.x) || 0; var tx = (d.target && d.target.x) || 0; return (sx + tx) / 2; })
+      .attr('y', function (d) { var sy = (d.source && d.source.y) || 0; var ty = (d.target && d.target.y) || 0; return (sy + ty) / 2; });
+  }
+
+  if (nodeGroupSelection) {
+    nodeGroupSelection.attr('transform', function (d) {
+      return 'translate(' + (d.x || 0) + ',' + (d.y || 0) + ')';
+    });
+  }
+
+  if (nodeLabelSelection) {
+    nodeLabelSelection
+      .attr('x', function (d) { return d.x || 0; })
+      .attr('y', function (d) { return (d.y || 0) + getNodeSize(d) + 12; });
+  }
+}
+
+// Shorten line endpoint to stop at node boundary
+function shortenLine(source, target, offset) {
+  var sx = source.x || 0, sy = source.y || 0;
+  var tx = target.x || 0, ty = target.y || 0;
+  var dx = tx - sx;
+  var dy = ty - sy;
+  var dist = Math.sqrt(dx * dx + dy * dy);
+  if (dist === 0) return { x: tx, y: ty };
+  var ratio = (dist - offset) / dist;
+  return {
+    x: sx + dx * ratio,
+    y: sy + dy * ratio,
+  };
+}
+
+// ---------------------------------------------------------------------------
+// renderGraph - D3 data join
+// ---------------------------------------------------------------------------
+
+function renderGraph() {
+  if (!svg) return;
+  computeDegrees();
+
+  var visibleNodes = nodeData.filter(function (d) { return !d.hidden; });
+  var visibleNodeIds = new Set(visibleNodes.map(function (d) { return d.id; }));
+  var visibleEdges = edgeData.filter(function (d) {
+    var srcId = typeof d.source === 'object' ? d.source.id : d.source;
+    var tgtId = typeof d.target === 'object' ? d.target.id : d.target;
+    return visibleNodeIds.has(srcId) && visibleNodeIds.has(tgtId);
+  });
+
+  // --- Edges ---
+  edgeSelection = edgesGroup.selectAll('line.edge')
+    .data(visibleEdges, function (d) { return d.id; });
+  edgeSelection.exit().remove();
+  edgeSelection = edgeSelection.enter()
+    .append('line')
+    .attr('class', 'edge')
+    .merge(edgeSelection);
+  edgeSelection
+    .attr('stroke', function (d) { return EDGE_TYPE_COLORS[d.type] || '#8b949e'; })
+    .attr('marker-end', function (d) {
+      var key = EDGE_TYPE_COLORS[d.type] ? d.type : 'default';
+      return 'url(#arrow-' + key + ')';
+    });
+
+  // --- Edge labels ---
+  edgeLabelSelection = edgeLabelsGroup.selectAll('text.edge-label')
+    .data(visibleEdges, function (d) { return d.id; });
+  edgeLabelSelection.exit().remove();
+  edgeLabelSelection = edgeLabelSelection.enter()
+    .append('text')
+    .attr('class', 'edge-label')
+    .merge(edgeLabelSelection);
+  edgeLabelSelection
+    .text(function (d) { return d.type; });
+
+  // --- Node groups ---
+  nodeGroupSelection = nodesGroup.selectAll('g.node-group')
+    .data(visibleNodes, function (d) { return d.id; });
+  nodeGroupSelection.exit().remove();
+  var nodeEnter = nodeGroupSelection.enter()
+    .append('g')
+    .attr('class', 'node-group')
+    .call(d3.drag()
+      .on('start', dragStarted)
+      .on('drag', dragged)
+      .on('end', dragEnded));
+
+  nodeEnter.append('path').attr('class', 'node-shape');
+  nodeEnter.append('text').attr('class', 'node-degree-label');
+
+  nodeGroupSelection = nodeEnter.merge(nodeGroupSelection);
+
+  // Update shapes and colors
+  nodeGroupSelection.select('path.node-shape')
+    .attr('d', function (d) { return getSymbolPath(d.type, getNodeSize(d)); })
+    .attr('fill', function (d) {
+      if (communityColorMap[d.id]) return communityColorMap[d.id];
+      return ENTITY_STYLES[d.type] ? ENTITY_STYLES[d.type].color : '#8b949e';
+    })
+    .attr('stroke', 'none');
+
+  // Degree count centered in node
+  nodeGroupSelection.select('text.node-degree-label')
+    .text(function (d) { return d._degree || ''; })
+    .attr('text-anchor', 'middle')
+    .attr('dominant-baseline', 'central')
+    .attr('font-size', function (d) { return Math.max(9, getNodeSize(d) * 0.55) + 'px'; })
+    .attr('fill', '#fff')
+    .attr('font-weight', '700')
+    .attr('pointer-events', 'none');
+
+  // Update selection state
+  nodeGroupSelection.classed('selected', function (d) { return d.id === selectedNodeId; });
+  nodeGroupSelection.classed('focus-root', function (d) {
+    return isFocusMode && focusStack.length > 0 && focusStack[focusStack.length - 1].nodeId === d.id;
+  });
+
+  // Node interactions
+  nodeGroupSelection
+    .on('click', function (event, d) {
+      event.stopPropagation();
+      handleNodeClick(d);
+    })
+    .on('dblclick', function (event, d) {
+      event.stopPropagation();
+      event.preventDefault();
+      enterFocusMode(d.id, d.label);
+    })
+    .on('contextmenu', function (event, d) {
+      event.preventDefault();
+      event.stopPropagation();
+      handleNodeContextMenu(event, d);
+    })
+    .on('mouseenter', function (event, d) {
+      showTooltip(event, d);
+    })
+    .on('mousemove', function (event) {
+      moveTooltip(event);
+    })
+    .on('mouseleave', function () {
+      hideTooltip();
+    });
+
+  // --- Node labels ---
+  nodeLabelSelection = nodeLabelsGroup.selectAll('text.node-label')
+    .data(visibleNodes, function (d) { return d.id; });
+  nodeLabelSelection.exit().remove();
+  nodeLabelSelection = nodeLabelSelection.enter()
+    .append('text')
+    .attr('class', 'node-label')
+    .merge(nodeLabelSelection);
+  nodeLabelSelection
+    .text(function (d) {
+      var label = d.label || '';
+      return label.length > 24 ? label.substring(0, 22) + '...' : label;
+    });
+
+  // Restart simulation only for force-directed layouts
+  if (!isStaticLayout) {
+    createSimulation();
+  } else {
+    // For static layouts, resolve edge references and position elements
+    resolveEdgeReferences();
+    ticked();
+  }
+
+  updateLevelOfDetail();
+  updateGraphStatsFromData();
+}
+
+// ---------------------------------------------------------------------------
+// Drag handlers
+// ---------------------------------------------------------------------------
+
+function dragStarted(event, d) {
+  if (!event.active && simulation) simulation.alphaTarget(0.3).restart();
+  d.fx = d.x;
+  d.fy = d.y;
+}
+
+function dragged(event, d) {
+  d.fx = event.x;
+  d.fy = event.y;
+}
+
+function dragEnded(event, d) {
+  if (!event.active && simulation) simulation.alphaTarget(0);
+  // Keep pinned: d.fx and d.fy remain set
+}
+
+// ---------------------------------------------------------------------------
+// Node interaction handlers
+// ---------------------------------------------------------------------------
+
+async function handleNodeClick(d) {
+  // Pathfinder mode: collect start/end nodes
+  if (pathfinderActive) {
+    handlePathfinderClick(d);
+    return;
+  }
+
+  selectedNodeId = d.id;
+  if (nodesGroup) {
+    nodesGroup.selectAll('.node-group').classed('selected', function (n) { return n.id === d.id; });
+  }
+
+  if (window.laminarkApp && window.laminarkApp.fetchNodeDetails) {
+    var details = await window.laminarkApp.fetchNodeDetails(d.id);
+    if (details && window.laminarkApp.showNodeDetails) {
+      window.laminarkApp.showNodeDetails(details);
+    }
+  }
+}
+
+function handleNodeContextMenu(event, d) {
+  contextMenuTargetNode = { id: d.id, label: d.label, type: d.type };
+
+  var items = [
+    { type: 'header', label: 'Filter' },
+    { type: 'item', label: 'This type only (' + d.type + ')',
+      action: 'filter-type:' + d.type,
+      color: ENTITY_STYLES[d.type] ? ENTITY_STYLES[d.type].color : null },
+    { type: 'item', label: 'Focus on this node', action: 'focus' },
+    { type: 'divider' },
+    { type: 'header', label: 'Show Linked' },
+  ];
+
+  Object.keys(ENTITY_STYLES).forEach(function (t) {
+    if (t !== d.type) {
+      items.push({
+        type: 'item',
+        label: t,
+        action: 'show-linked:' + t,
+        color: ENTITY_STYLES[t].color,
+      });
+    }
+  });
+
+  items.push({ type: 'divider' });
+  items.push({ type: 'header', label: 'Arrange' });
+  items.push({ type: 'item', label: 'Re-layout graph', action: 'relayout' });
+  items.push({ type: 'item', label: 'Fit to view', action: 'fit' });
+
+  showContextMenu(event.pageX, event.pageY, items);
+}
+
+// ---------------------------------------------------------------------------
+// loadGraphData
+// ---------------------------------------------------------------------------
+
+async function loadGraphData(filters) {
+  if (!svg) {
+    console.error('[laminark:graph] D3 not initialized');
+    return { nodeCount: 0, edgeCount: 0 };
+  }
+
+  // Don't reload full graph data while in focus mode — it would
+  // replace the neighborhood data and corrupt breadcrumbs/state.
+  // SSE reconnects and tab switches should not interrupt focus.
+  if (isFocusMode) {
+    console.log('[laminark:graph] Skipping loadGraphData (focus mode active)');
+    return { nodeCount: nodeData.length, edgeCount: edgeData.length };
+  }
+
+  // Don't reload while graph is frozen (manual pause or pathfinder result).
+  // Data will be fetched when the user unfreezes or clicks sync.
+  if (graphFrozen) {
+    console.log('[laminark:graph] Skipping loadGraphData (graph frozen)');
+    graphStale = true;
+    updateSyncButton();
+    return { nodeCount: nodeData.length, edgeCount: edgeData.length };
+  }
+
+  var data;
+  if (window.laminarkApp && window.laminarkApp.fetchGraphData) {
+    data = await window.laminarkApp.fetchGraphData(filters);
+  } else {
+    var params = new URLSearchParams();
+    if (filters && filters.type) params.set('type', filters.type);
+    if (filters && filters.since) params.set('since', filters.since);
+    if (filters && filters.until) params.set('until', filters.until);
+    var url = '/api/graph' + (params.toString() ? '?' + params.toString() : '');
+    try {
+      var res = await fetch(url);
+      if (!res.ok) throw new Error('HTTP ' + res.status);
+      data = await res.json();
+    } catch (err) {
+      console.error('[laminark:graph] Failed to fetch graph data:', err);
+      data = { nodes: [], edges: [] };
+    }
+  }
+
+  if (!data.nodes.length && !data.edges.length) {
+    nodeData = [];
+    edgeData = [];
+    renderGraph();
+    updateGraphStats(0, 0);
+    showGraphEmptyState();
+    return { nodeCount: 0, edgeCount: 0 };
+  }
+
+  hideGraphEmptyState();
+
+  // Build data arrays
+  nodeData = data.nodes.map(function (node) {
+    return {
+      id: node.id,
+      label: node.label,
+      type: node.type,
+      observationCount: node.observationCount || 0,
+      createdAt: node.createdAt,
+      hidden: false,
+    };
+  });
+
+  edgeData = data.edges.map(function (edge) {
+    return {
+      id: edge.id,
+      source: edge.source,
+      target: edge.target,
+      type: edge.type,
+      label: edge.label || edge.type,
+    };
+  });
+
+  // For static layouts, re-apply layout positioning after fresh data load
+  if (isStaticLayout) {
+    // Reset to force-directed first so renderGraph creates a simulation
+    isStaticLayout = false;
+    renderGraph();
+    // Re-apply the current static layout (which sets isStaticLayout back to true)
+    if (currentLayout === 'hierarchical') {
+      setTimeout(function () { applyHierarchicalLayout(); }, 100);
+    } else if (currentLayout === 'concentric') {
+      setTimeout(function () { applyConcentricLayout(); }, 100);
+    }
+  } else {
+    renderGraph();
+    // Fit to view after simulation settles a bit
+    setTimeout(function () { fitToView(); }, 800);
+  }
+
+  var counts = { nodeCount: data.nodes.length, edgeCount: data.edges.length };
+  updateGraphStats(counts.nodeCount, counts.edgeCount);
+  console.log('[laminark:graph] Loaded', counts.nodeCount, 'nodes,', counts.edgeCount, 'edges');
+  return counts;
+}
+
+// ---------------------------------------------------------------------------
+// Incremental updates
+// ---------------------------------------------------------------------------
+
+function addNode(nodeDataIn) {
+  if (!svg) return;
+
+  var existing = nodeData.find(function (d) { return d.id === nodeDataIn.id; });
+  if (existing) {
+    Object.assign(existing, nodeDataIn);
+  } else {
+    nodeData.push({
+      id: nodeDataIn.id,
+      label: nodeDataIn.label,
+      type: nodeDataIn.type,
+      observationCount: nodeDataIn.observationCount || 0,
+      createdAt: nodeDataIn.createdAt,
+      hidden: false,
+    });
+    hideGraphEmptyState();
+  }
+
+  renderGraph();
+  if (!isStaticLayout && simulation) simulation.alpha(0.3).restart();
+  updateGraphStatsFromData();
+}
+
+function addEdge(edgeDataIn) {
+  if (!svg) return;
+
+  var existing = edgeData.find(function (d) { return d.id === edgeDataIn.id; });
+  if (existing) return;
+
+  var srcExists = nodeData.find(function (d) { return d.id === edgeDataIn.source; });
+  var tgtExists = nodeData.find(function (d) { return d.id === edgeDataIn.target; });
+  if (!srcExists || !tgtExists) return;
+
+  edgeData.push({
+    id: edgeDataIn.id,
+    source: edgeDataIn.source,
+    target: edgeDataIn.target,
+    type: edgeDataIn.type,
+    label: edgeDataIn.label || edgeDataIn.type,
+  });
+
+  renderGraph();
+  if (!isStaticLayout && simulation) simulation.alpha(0.3).restart();
+  updateGraphStatsFromData();
+}
+
+function removeElements(ids) {
+  if (!svg) return;
+  var idSet = new Set(ids);
+
+  edgeData = edgeData.filter(function (d) { return !idSet.has(d.id); });
+  nodeData = nodeData.filter(function (d) { return !idSet.has(d.id); });
+  // Also remove edges connected to removed nodes
+  edgeData = edgeData.filter(function (d) {
+    var srcId = typeof d.source === 'object' ? d.source.id : d.source;
+    var tgtId = typeof d.target === 'object' ? d.target.id : d.target;
+    return !idSet.has(srcId) && !idSet.has(tgtId);
+  });
+
+  renderGraph();
+  updateGraphStatsFromData();
+
+  if (nodeData.length === 0) showGraphEmptyState();
+}
+
+// ---------------------------------------------------------------------------
+// Fit to view
+// ---------------------------------------------------------------------------
+
+function fitToView() {
+  if (!svg || !svgG || !containerEl) return;
+
+  var visibleNodes = nodeData.filter(function (d) { return !d.hidden; });
+  if (visibleNodes.length === 0) return;
+
+  var width = containerEl.clientWidth || 800;
+  var height = containerEl.clientHeight || 600;
+
+  var xExtent = d3.extent(visibleNodes, function (d) { return d.x; });
+  var yExtent = d3.extent(visibleNodes, function (d) { return d.y; });
+
+  if (xExtent[0] == null || yExtent[0] == null) return;
+
+  var padding = 60;
+  var graphWidth = (xExtent[1] - xExtent[0]) || 1;
+  var graphHeight = (yExtent[1] - yExtent[0]) || 1;
+  var scale = Math.min(
+    (width - padding * 2) / graphWidth,
+    (height - padding * 2) / graphHeight,
+    2.0
+  );
+  scale = Math.max(scale, 0.1);
+
+  var cx = (xExtent[0] + xExtent[1]) / 2;
+  var cy = (yExtent[0] + yExtent[1]) / 2;
+
+  var transform = d3.zoomIdentity
+    .translate(width / 2, height / 2)
+    .scale(scale)
+    .translate(-cx, -cy);
+
+  svg.transition().duration(500).call(zoomBehavior.transform, transform);
+}
+
+// ---------------------------------------------------------------------------
+// Filter handling
+// ---------------------------------------------------------------------------
+
+function applyFilter(types) {
+  if (!types) {
+    nodeData.forEach(function (d) { d.hidden = false; });
+  } else {
+    var typeSet = new Set(types);
+    nodeData.forEach(function (d) {
+      d.hidden = !typeSet.has(d.type);
+    });
+  }
+  renderGraph();
+  updateGraphStatsFromData();
+}
+
+function filterByType(type) {
+  if (activeEntityTypes.has(type)) {
+    activeEntityTypes.delete(type);
+  } else {
+    activeEntityTypes.add(type);
+  }
+  applyActiveFilters();
+}
+
+function resetFilters() {
+  Object.keys(ENTITY_STYLES).forEach(function (type) {
+    activeEntityTypes.add(type);
+  });
+  activeTimeRange.from = null;
+  activeTimeRange.to = null;
+  applyActiveFilters();
+}
+
+function setActiveTypes(types) {
+  activeEntityTypes.clear();
+  if (!types) {
+    Object.keys(ENTITY_STYLES).forEach(function (t) { activeEntityTypes.add(t); });
+  } else {
+    types.forEach(function (t) { activeEntityTypes.add(t); });
+  }
+  applyActiveFilters();
+}
+
+function applyActiveFilters() {
+  var allActive = activeEntityTypes.size === Object.keys(ENTITY_STYLES).length;
+  var hasTimeFilter = activeTimeRange.from || activeTimeRange.to;
+
+  nodeData.forEach(function (d) {
+    var typeOk = activeEntityTypes.has(d.type);
+    var timeOk = true;
+    if (hasTimeFilter && d.createdAt) {
+      if (activeTimeRange.from && d.createdAt < activeTimeRange.from) timeOk = false;
+      if (activeTimeRange.to && d.createdAt > activeTimeRange.to) timeOk = false;
+    }
+    d.hidden = !(typeOk && timeOk);
+  });
+
+  renderGraph();
+  updateGraphStatsFromData();
+  updateFilterCounts();
+
+  // Fit visible elements
+  setTimeout(function () {
+    var hasVisible = nodeData.some(function (d) { return !d.hidden; });
+    if (hasVisible) fitToView();
+  }, 600);
+}
+
+function filterByTimeRange(from, to) {
+  activeTimeRange.from = from || null;
+  activeTimeRange.to = to || null;
+  applyActiveFilters();
+}
+
+// ---------------------------------------------------------------------------
+// Type counts
+// ---------------------------------------------------------------------------
+
+function getTypeCounts() {
+  var counts = {};
+  Object.keys(ENTITY_STYLES).forEach(function (type) {
+    counts[type] = { total: 0, visible: 0 };
+  });
+
+  nodeData.forEach(function (d) {
+    if (counts[d.type]) {
+      counts[d.type].total++;
+      if (!d.hidden) counts[d.type].visible++;
+    }
+  });
+
+  return counts;
+}
+
+function updateFilterCounts() {
+  var counts = getTypeCounts();
+  Object.keys(counts).forEach(function (type) {
+    var pill = document.querySelector('.filter-pill[data-type="' + type + '"]');
+    if (pill) {
+      var countEl = pill.querySelector('.count');
+      if (countEl) countEl.textContent = counts[type].visible;
+    }
+  });
+
+  var allPill = document.querySelector('.filter-pill[data-type="all"]');
+  if (allPill) {
+    var allCountEl = allPill.querySelector('.count');
+    if (allCountEl) {
+      var totalVisible = 0;
+      Object.keys(counts).forEach(function (type) { totalVisible += counts[type].visible; });
+      allCountEl.textContent = totalVisible;
+    }
+  }
+}
+
+// ---------------------------------------------------------------------------
+// Empty state
+// ---------------------------------------------------------------------------
+
+function showGraphEmptyState() {
+  if (!containerEl) return;
+  var existing = containerEl.querySelector('.graph-empty-state');
+  if (existing) { existing.style.display = ''; return; }
+
+  var msg = document.createElement('div');
+  msg.className = 'graph-empty-state';
+  msg.textContent = 'No graph data yet. Observations will appear here as they are processed.';
+  containerEl.appendChild(msg);
+}
+
+function hideGraphEmptyState() {
+  if (!containerEl) return;
+  var existing = containerEl.querySelector('.graph-empty-state');
+  if (existing) existing.style.display = 'none';
+}
+
+// ---------------------------------------------------------------------------
+// Stats display
+// ---------------------------------------------------------------------------
+
+function updateGraphStats(nodeCount, edgeCount) {
+  var el = document.getElementById('graph-stats');
+  if (el) el.textContent = nodeCount + ' nodes, ' + edgeCount + ' edges';
+}
+
+function updateGraphStatsFromData() {
+  var visibleNodes = nodeData.filter(function (d) { return !d.hidden; });
+  var visibleNodeIds = new Set(visibleNodes.map(function (d) { return d.id; }));
+  var visibleEdges = edgeData.filter(function (d) {
+    var srcId = typeof d.source === 'object' ? d.source.id : d.source;
+    var tgtId = typeof d.target === 'object' ? d.target.id : d.target;
+    return visibleNodeIds.has(srcId) && visibleNodeIds.has(tgtId);
+  });
+  updateGraphStats(visibleNodes.length, visibleEdges.length);
+}
+
+// ---------------------------------------------------------------------------
+// Tooltip
+// ---------------------------------------------------------------------------
+
+function buildTooltipContent(d) {
+  var degree = d._degree || 0;
+
+  // Gather connected node names by relationship type
+  var connections = {};
+  edgeData.forEach(function (e) {
+    var srcId = typeof e.source === 'object' ? e.source.id : e.source;
+    var tgtId = typeof e.target === 'object' ? e.target.id : e.target;
+    var linkedId = null;
+    if (srcId === d.id) linkedId = tgtId;
+    else if (tgtId === d.id) linkedId = srcId;
+    if (!linkedId) return;
+
+    var linked = nodeData.find(function (n) { return n.id === linkedId; });
+    if (!linked) return;
+    var relType = e.type || 'related_to';
+    if (!connections[relType]) connections[relType] = [];
+    connections[relType].push(linked.label || linkedId);
+  });
+
+  var html = '<div class="tooltip-header">'
+    + '<span class="tooltip-type" style="color:' + (ENTITY_STYLES[d.type] ? ENTITY_STYLES[d.type].color : '#8b949e') + '">' + d.type + '</span>'
+    + '</div>'
+    + '<div class="tooltip-name">' + escapeHtml(d.label || '') + '</div>'
+    + '<div class="tooltip-stat">' + degree + ' connection' + (degree !== 1 ? 's' : '') + '</div>';
+
+  var relTypes = Object.keys(connections);
+  if (relTypes.length > 0) {
+    html += '<div class="tooltip-connections">';
+    relTypes.forEach(function (rel) {
+      var names = connections[rel];
+      var display = names.slice(0, 3).map(escapeHtml).join(', ');
+      if (names.length > 3) display += ' +' + (names.length - 3) + ' more';
+      html += '<div class="tooltip-rel"><span class="tooltip-rel-type">' + rel.replace(/_/g, ' ') + ':</span> ' + display + '</div>';
+    });
+    html += '</div>';
+  }
+
+  return html;
+}
+
+function showTooltip(event, d) {
+  if (!tooltipEl) return;
+  tooltipEl.innerHTML = buildTooltipContent(d);
+  tooltipEl.classList.remove('hidden');
+  positionTooltip(event.pageX, event.pageY);
+}
+
+function moveTooltip(event) {
+  if (!tooltipEl || tooltipEl.classList.contains('hidden')) return;
+  positionTooltip(event.pageX, event.pageY);
+}
+
+function positionTooltip(px, py) {
+  var offset = 12;
+  var x = px + offset;
+  var y = py + offset;
+  var rect = tooltipEl.getBoundingClientRect();
+  var vw = window.innerWidth;
+  var vh = window.innerHeight;
+  if (x + rect.width > vw - 8) x = px - rect.width - offset;
+  if (y + rect.height > vh - 8) y = py - rect.height - offset;
+  if (x < 8) x = 8;
+  if (y < 8) y = 8;
+  tooltipEl.style.left = x + 'px';
+  tooltipEl.style.top = y + 'px';
+}
+
+function hideTooltip() {
+  if (tooltipEl) tooltipEl.classList.add('hidden');
+}
+
+// ---------------------------------------------------------------------------
+// Level-of-detail (LOD)
+// ---------------------------------------------------------------------------
+
+function updateLevelOfDetail() {
+  var newLevel;
+  if (currentZoom < 0.3) {
+    newLevel = 2;
+  } else if (currentZoom < 0.5) {
+    newLevel = 1;
+  } else {
+    newLevel = 0;
+  }
+
+  if (newLevel === currentLodLevel) return;
+  currentLodLevel = newLevel;
+
+  if (nodeLabelsGroup) {
+    nodeLabelsGroup.style('display', newLevel >= 1 ? 'none' : null);
+  }
+  if (edgeLabelsGroup) {
+    edgeLabelsGroup.style('display', (newLevel >= 1 || !edgeLabelsVisible) ? 'none' : null);
+  }
+  if (edgesGroup) {
+    edgesGroup.style('display', newLevel >= 2 ? 'none' : null);
+  }
+}
+
+// ---------------------------------------------------------------------------
+// Edge label toggle (with per-type dropdown)
+// ---------------------------------------------------------------------------
+
+function initEdgeLabelToggle() {
+  var btn = document.getElementById('edge-labels-btn');
+  if (!btn) return;
+
+  btn.classList.toggle('active', edgeLabelsVisible);
+  applyEdgeLabelVisibility();
+
+  // Build dropdown
+  var dropdown = document.createElement('div');
+  dropdown.className = 'edge-labels-dropdown hidden';
+  dropdown.id = 'edge-labels-dropdown';
+
+  // "All" toggle row
+  var allRow = document.createElement('div');
+  allRow.className = 'edge-labels-dropdown-item edge-labels-all-toggle';
+  var allCheck = document.createElement('input');
+  allCheck.type = 'checkbox';
+  allCheck.checked = edgeLabelsVisible;
+  allCheck.id = 'edge-labels-all-check';
+  var allLabel = document.createElement('label');
+  allLabel.textContent = 'All labels';
+  allLabel.setAttribute('for', 'edge-labels-all-check');
+  allLabel.style.fontWeight = '600';
+  allRow.appendChild(allCheck);
+  allRow.appendChild(allLabel);
+  dropdown.appendChild(allRow);
+
+  var divider = document.createElement('div');
+  divider.className = 'edge-labels-dropdown-divider';
+  dropdown.appendChild(divider);
+
+  // Per-type rows
+  Object.keys(EDGE_TYPE_COLORS).forEach(function (type) {
+    var row = document.createElement('div');
+    row.className = 'edge-labels-dropdown-item';
+
+    var dot = document.createElement('span');
+    dot.className = 'edge-type-dot';
+    dot.style.background = EDGE_TYPE_COLORS[type];
+    row.appendChild(dot);
+
+    var check = document.createElement('input');
+    check.type = 'checkbox';
+    check.checked = !hiddenEdgeLabelTypes.has(type);
+    check.setAttribute('data-edge-type', type);
+    check.id = 'edge-type-' + type;
+    row.appendChild(check);
+
+    var label = document.createElement('label');
+    label.textContent = type;
+    label.setAttribute('for', 'edge-type-' + type);
+    row.appendChild(label);
+
+    check.addEventListener('change', function () {
+      if (check.checked) {
+        hiddenEdgeLabelTypes.delete(type);
+      } else {
+        hiddenEdgeLabelTypes.add(type);
+      }
+      persistHiddenEdgeTypes();
+      applyEdgeLabelVisibility();
+      updateAllCheckState();
+    });
+
+    dropdown.appendChild(row);
+  });
+
+  // Insert dropdown after button — wrap btn in a relative container
+  // so the dropdown positions correctly without breaking the toolbar's absolute positioning
+  var btnWrapper = document.createElement('div');
+  btnWrapper.style.position = 'relative';
+  btn.parentElement.insertBefore(btnWrapper, btn);
+  btnWrapper.appendChild(btn);
+  btnWrapper.appendChild(dropdown);
+
+  // Toggle dropdown on click
+  btn.addEventListener('click', function (e) {
+    e.stopPropagation();
+    var isHidden = dropdown.classList.contains('hidden');
+    dropdown.classList.toggle('hidden', !isHidden);
+  });
+
+  // All toggle handler
+  allCheck.addEventListener('change', function () {
+    edgeLabelsVisible = allCheck.checked;
+    localStorage.setItem('laminark-edge-labels', edgeLabelsVisible ? 'true' : 'false');
+    btn.classList.toggle('active', edgeLabelsVisible);
+    applyEdgeLabelVisibility();
+  });
+
+  // Close on outside click
+  document.addEventListener('click', function (e) {
+    if (!btn.contains(e.target) && !dropdown.contains(e.target)) {
+      dropdown.classList.add('hidden');
+    }
+  });
+
+  function updateAllCheckState() {
+    var anyHidden = hiddenEdgeLabelTypes.size > 0;
+    allCheck.checked = edgeLabelsVisible;
+    allCheck.indeterminate = edgeLabelsVisible && anyHidden;
+  }
+}
+
+function persistHiddenEdgeTypes() {
+  localStorage.setItem('laminark-hidden-edge-types', JSON.stringify(Array.from(hiddenEdgeLabelTypes)));
+}
+
+function applyEdgeLabelVisibility() {
+  if (!edgeLabelsGroup) return;
+  // Hide entire group if master toggle off or LOD too low
+  if (!edgeLabelsVisible || currentLodLevel >= 1) {
+    edgeLabelsGroup.style('display', 'none');
+    return;
+  }
+  edgeLabelsGroup.style('display', null);
+
+  // Per-type visibility
+  if (hiddenEdgeLabelTypes.size > 0) {
+    edgeLabelsGroup.selectAll('.edge-label')
+      .style('display', function (d) {
+        return hiddenEdgeLabelTypes.has(d.type) ? 'none' : null;
+      });
+  } else {
+    edgeLabelsGroup.selectAll('.edge-label').style('display', null);
+  }
+}
+
+// ---------------------------------------------------------------------------
+// Detail panel helpers
+// ---------------------------------------------------------------------------
+
+function hideDetailPanel() {
+  var panel = document.getElementById('detail-panel');
+  if (panel) panel.classList.add('hidden');
+  selectedNodeId = null;
+  if (nodesGroup) nodesGroup.selectAll('.node-group').classed('selected', false);
+}
+
+function selectAndCenterNode(nodeId) {
+  if (!svg) return;
+  var node = nodeData.find(function (d) { return d.id === nodeId; });
+  if (!node || node.x == null) return;
+
+  selectedNodeId = nodeId;
+  if (nodesGroup) {
+    nodesGroup.selectAll('.node-group').classed('selected', function (d) { return d.id === nodeId; });
+  }
+
+  // Center on node
+  var width = containerEl ? containerEl.clientWidth : 800;
+  var height = containerEl ? containerEl.clientHeight : 600;
+  var transform = d3.zoomIdentity
+    .translate(width / 2, height / 2)
+    .scale(currentZoom || 1)
+    .translate(-node.x, -node.y);
+  svg.transition().duration(300).call(zoomBehavior.transform, transform);
+
+  // Fetch and show details
+  if (window.laminarkApp && window.laminarkApp.fetchNodeDetails) {
+    window.laminarkApp.fetchNodeDetails(nodeId).then(function (details) {
+      if (details && window.laminarkApp.showNodeDetails) {
+        window.laminarkApp.showNodeDetails(details);
+      }
+    });
+  }
+}
+
+// ---------------------------------------------------------------------------
+// Search functions
+// ---------------------------------------------------------------------------
+
+function searchNodes(query) {
+  if (!query) return [];
+  var lowerQuery = query.toLowerCase();
+  var results = [];
+
+  nodeData.forEach(function (d) {
+    var label = (d.label || '').toLowerCase();
+    if (label.indexOf(lowerQuery) >= 0) {
+      results.push({ id: d.id, label: d.label, type: d.type });
+    }
+  });
+
+  results.sort(function (a, b) {
+    var aLower = a.label.toLowerCase();
+    var bLower = b.label.toLowerCase();
+    if (aLower === lowerQuery && bLower !== lowerQuery) return -1;
+    if (aLower !== lowerQuery && bLower === lowerQuery) return 1;
+    if (aLower.startsWith(lowerQuery) && !bLower.startsWith(lowerQuery)) return -1;
+    if (!aLower.startsWith(lowerQuery) && bLower.startsWith(lowerQuery)) return 1;
+    return 0;
+  });
+
+  return results.slice(0, 20);
+}
+
+function highlightSearchMatches(matchIds) {
+  if (!nodesGroup || !edgesGroup) return;
+  var idSet = new Set(matchIds);
+
+  nodesGroup.selectAll('.node-group')
+    .classed('search-match', function (d) { return idSet.has(d.id); })
+    .classed('search-dimmed', function (d) { return !idSet.has(d.id); });
+
+  nodeLabelsGroup.selectAll('.node-label')
+    .classed('search-dimmed', function (d) { return !idSet.has(d.id); });
+
+  edgesGroup.selectAll('.edge')
+    .classed('search-dimmed', function (d) {
+      var srcId = typeof d.source === 'object' ? d.source.id : d.source;
+      var tgtId = typeof d.target === 'object' ? d.target.id : d.target;
+      return !(idSet.has(srcId) && idSet.has(tgtId));
+    });
+
+  edgeLabelsGroup.selectAll('.edge-label')
+    .classed('search-dimmed', function (d) {
+      var srcId = typeof d.source === 'object' ? d.source.id : d.source;
+      var tgtId = typeof d.target === 'object' ? d.target.id : d.target;
+      return !(idSet.has(srcId) && idSet.has(tgtId));
+    });
+}
+
+function clearSearchHighlight() {
+  if (!nodesGroup) return;
+  nodesGroup.selectAll('.node-group').classed('search-match', false).classed('search-dimmed', false);
+  nodeLabelsGroup.selectAll('.node-label').classed('search-dimmed', false);
+  edgesGroup.selectAll('.edge').classed('search-dimmed', false);
+  edgeLabelsGroup.selectAll('.edge-label').classed('search-dimmed', false);
+}
+
+function highlightCluster(nodeIds) {
+  highlightSearchMatches(nodeIds);
+}
+
+// ---------------------------------------------------------------------------
+// Performance stats overlay
+// ---------------------------------------------------------------------------
+
+function togglePerfOverlay() {
+  perfOverlayVisible = !perfOverlayVisible;
+  if (perfOverlayVisible) showPerfOverlay();
+  else hidePerfOverlay();
+}
+
+function showPerfOverlay() {
+  if (!containerEl) return;
+  if (!perfOverlayEl) {
+    perfOverlayEl = document.createElement('div');
+    perfOverlayEl.className = 'perf-overlay';
+    containerEl.appendChild(perfOverlayEl);
+  }
+  perfOverlayEl.style.display = '';
+  perfLastFpsTime = performance.now();
+  perfFrameCount = 0;
+  updatePerfOverlay();
+}
+
+function hidePerfOverlay() {
+  if (perfOverlayEl) perfOverlayEl.style.display = 'none';
+  if (perfRafId) { cancelAnimationFrame(perfRafId); perfRafId = null; }
+}
+
+function updatePerfOverlay() {
+  if (!perfOverlayVisible || !perfOverlayEl) return;
+
+  perfFrameCount++;
+  var now = performance.now();
+  if (now - perfLastFpsTime >= 1000) {
+    perfFps = Math.round((perfFrameCount * 1000) / (now - perfLastFpsTime));
+    perfFrameCount = 0;
+    perfLastFpsTime = now;
+  }
+
+  var total = nodeData.length;
+  var visible = nodeData.filter(function (d) { return !d.hidden; }).length;
+  var totalEdges = edgeData.length;
+  var lodText = currentLodLevel === 0 ? 'Full' : currentLodLevel === 1 ? 'No labels' : 'Minimal';
+
+  perfOverlayEl.textContent =
+    'Nodes: ' + visible + '/' + total +
+    ' | Edges: ' + totalEdges +
+    ' | FPS: ' + perfFps +
+    ' | Zoom: ' + currentZoom.toFixed(2) +
+    ' | LOD: ' + lodText;
+
+  perfRafId = requestAnimationFrame(updatePerfOverlay);
+}
+
+// ---------------------------------------------------------------------------
+// Batch update optimization for SSE events
+// ---------------------------------------------------------------------------
+
+function queueBatchUpdate(update) {
+  batchQueue.push(update);
+  if (batchFlushTimer) clearTimeout(batchFlushTimer);
+  batchFlushTimer = setTimeout(flushBatchUpdates, BATCH_DELAY_MS);
+}
+
+function clearBatchQueue() {
+  if (batchFlushTimer) clearTimeout(batchFlushTimer);
+  batchFlushTimer = null;
+  batchQueue = [];
+}
+
+function flushBatchUpdates() {
+  if (!svg || batchQueue.length === 0) return;
+
+  var newNodes = 0;
+  var newEdges = 0;
+
+  batchQueue.forEach(function (update) {
+    if (update.type === 'addNode') {
+      var existing = nodeData.find(function (d) { return d.id === update.data.id; });
+      if (existing) {
+        Object.assign(existing, update.data);
+      } else {
+        nodeData.push({
+          id: update.data.id,
+          label: update.data.label,
+          type: update.data.type,
+          observationCount: update.data.observationCount || 0,
+          createdAt: update.data.createdAt,
+          hidden: false,
+        });
+        newNodes++;
+      }
+    } else if (update.type === 'addEdge') {
+      var edgeExists = edgeData.find(function (d) { return d.id === update.data.id; });
+      var srcExists = nodeData.find(function (d) { return d.id === update.data.source; });
+      var tgtExists = nodeData.find(function (d) { return d.id === update.data.target; });
+      if (!edgeExists && srcExists && tgtExists) {
+        edgeData.push({
+          id: update.data.id,
+          source: update.data.source,
+          target: update.data.target,
+          type: update.data.type,
+          label: update.data.label || update.data.type,
+        });
+        newEdges++;
+      }
+    }
+  });
+
+  batchQueue = [];
+  batchFlushTimer = null;
+
+  if (newNodes > 0 || newEdges > 0) {
+    // Suppress rendering while graph is frozen
+    if (graphFrozen) {
+      console.log('[laminark:graph] Batch data accumulated but render suppressed (graph frozen)');
+      graphStale = true;
+      updateSyncButton();
+      return;
+    }
+    hideGraphEmptyState();
+    renderGraph();
+    if (!isStaticLayout && simulation) simulation.alpha(0.3).restart();
+    console.log('[laminark:graph] Batch update: added ' + newNodes + ' nodes, ' + newEdges + ' edges');
+  }
+
+  updateGraphStatsFromData();
+}
+
+// ---------------------------------------------------------------------------
+// Focus mode (drill-down)
+// ---------------------------------------------------------------------------
+
+var _focusFetching = false;
+
+async function enterFocusMode(nodeId, label) {
+  if (!svg || _focusFetching) return;
+
+  if (!isFocusMode) {
+    cachedFullData = {
+      nodes: nodeData.map(function (d) {
+        var copy = Object.assign({}, d);
+        delete copy.x; delete copy.y; delete copy.vx; delete copy.vy;
+        delete copy.fx; delete copy.fy; delete copy.index;
+        return copy;
+      }),
+      edges: edgeData.map(function (d) {
+        return {
+          id: d.id,
+          source: typeof d.source === 'object' ? d.source.id : d.source,
+          target: typeof d.target === 'object' ? d.target.id : d.target,
+          type: d.type,
+          label: d.label,
+        };
+      }),
+    };
+  }
+
+  _focusFetching = true;
+  var data;
+  try {
+    var res = await fetch('/api/node/' + encodeURIComponent(nodeId) + '/neighborhood?depth=1');
+    if (!res.ok) throw new Error('HTTP ' + res.status);
+    data = await res.json();
+  } catch (err) {
+    console.error('[laminark:graph] Failed to fetch neighborhood:', err);
+    _focusFetching = false;
+    return;
+  }
+
+  if (!data.nodes || data.nodes.length === 0) { _focusFetching = false; return; }
+
+  isFocusMode = true;
+  // Prevent duplicate consecutive breadcrumb entries
+  var top = focusStack.length > 0 ? focusStack[focusStack.length - 1] : null;
+  if (!top || top.nodeId !== nodeId) {
+    focusStack.push({ nodeId: nodeId, label: label });
+  }
+
+  nodeData = data.nodes.map(function (node) {
+    return {
+      id: node.id,
+      label: node.label,
+      type: node.type,
+      observationCount: node.observationCount || 0,
+      createdAt: node.createdAt,
+      hidden: false,
+    };
+  });
+
+  edgeData = data.edges.map(function (edge) {
+    return {
+      id: edge.id,
+      source: edge.source,
+      target: edge.target,
+      type: edge.type,
+      label: edge.type,
+    };
+  });
+
+  renderGraph();
+  setTimeout(function () { fitToView(); }, 600);
+
+  _focusFetching = false;
+  updateBreadcrumbs();
+  updateGraphStatsFromData();
+  console.log('[laminark:graph] Focus mode: centered on', label, '(' + data.nodes.length + ' nodes)');
+}
+
+function exitFocusMode() {
+  if (!svg || !isFocusMode) return;
+
+  isFocusMode = false;
+  focusStack = [];
+
+  if (cachedFullData) {
+    nodeData = cachedFullData.nodes;
+    edgeData = cachedFullData.edges;
+    cachedFullData = null;
+    renderGraph();
+    setTimeout(function () { fitToView(); }, 600);
+  } else {
+    loadGraphData();
+  }
+
+  updateBreadcrumbs();
+  updateGraphStatsFromData();
+  console.log('[laminark:graph] Exited focus mode');
+}
+
+function navigateBreadcrumb(index) {
+  if (index < 0) { exitFocusMode(); return; }
+  var target = focusStack[index];
+  if (!target) return;
+  // Trim stack to just before the target — enterFocusMode will re-push it.
+  // Keep isFocusMode true so enterFocusMode doesn't overwrite cachedFullData.
+  focusStack = focusStack.slice(0, index);
+  enterFocusMode(target.nodeId, target.label);
+}
+
+function updateBreadcrumbs() {
+  var bar = document.getElementById('graph-breadcrumbs');
+  if (!bar) return;
+
+  if (!isFocusMode || focusStack.length === 0) {
+    bar.classList.add('hidden');
+    return;
+  }
+
+  bar.classList.remove('hidden');
+  bar.innerHTML = '';
+
+  var rootBtn = document.createElement('button');
+  rootBtn.className = 'breadcrumb-item';
+  rootBtn.textContent = 'Full Graph';
+  rootBtn.addEventListener('click', function () { exitFocusMode(); });
+  bar.appendChild(rootBtn);
+
+  focusStack.forEach(function (item, idx) {
+    var sep = document.createElement('span');
+    sep.className = 'breadcrumb-separator';
+    sep.textContent = '>';
+    bar.appendChild(sep);
+
+    var btn = document.createElement('button');
+    btn.className = 'breadcrumb-item';
+    if (idx === focusStack.length - 1) btn.classList.add('current');
+    btn.textContent = item.label;
+    btn.addEventListener('click', (function (i) {
+      return function () {
+        if (i < focusStack.length - 1) navigateBreadcrumb(i);
+      };
+    })(idx));
+    bar.appendChild(btn);
+  });
+}
+
+// ---------------------------------------------------------------------------
+// Layout selector
+// ---------------------------------------------------------------------------
+
+function setLayout(layoutName) {
+  var validLayouts = ['clustered', 'hierarchical', 'concentric', 'communities', 'detangle'];
+  if (validLayouts.indexOf(layoutName) === -1) return;
+
+  var previousLayout = currentLayout;
+  currentLayout = layoutName;
+  localStorage.setItem('laminark-layout', layoutName);
+
+  var btns = document.querySelectorAll('.layout-btn');
+  btns.forEach(function (btn) {
+    btn.classList.toggle('active', btn.getAttribute('data-layout') === layoutName);
+  });
+
+  if (previousLayout === 'communities' && layoutName !== 'communities') {
+    clearCommunityColors();
+  }
+
+  if (!isFocusMode && nodeData.length > 0) {
+    if (layoutName === 'communities') {
+      applyCommunitiesLayout();
+    } else if (layoutName === 'hierarchical') {
+      applyHierarchicalLayout();
+    } else if (layoutName === 'concentric') {
+      applyConcentricLayout();
+    } else if (layoutName === 'detangle') {
+      applyDetangleLayout();
+    } else {
+      applyClusteredLayout();
+    }
+  }
+}
+
+function applyClusteredLayout() {
+  isStaticLayout = false;
+  // Release any fixed positions from other layouts
+  nodeData.forEach(function (d) { d.fx = null; d.fy = null; });
+  renderGraph();
+  if (simulation) simulation.alpha(1).restart();
+  setTimeout(function () { fitToView(); }, 800);
+}
+
+function applyHierarchicalLayout() {
+  isStaticLayout = true;
+  if (simulation) simulation.stop();
+
+  var visibleNodes = nodeData.filter(function (d) { return !d.hidden; });
+  if (visibleNodes.length === 0) return;
+
+  var width = containerEl ? containerEl.clientWidth : 800;
+  var height = containerEl ? containerEl.clientHeight : 600;
+
+  // Find root nodes (Project type or no incoming edges)
+  var incomingSet = new Set();
+  edgeData.forEach(function (e) {
+    var tgtId = typeof e.target === 'object' ? e.target.id : e.target;
+    incomingSet.add(tgtId);
+  });
+
+  var roots = visibleNodes.filter(function (d) {
+    return d.type === 'Project' || !incomingSet.has(d.id);
+  });
+  if (roots.length === 0) roots = [visibleNodes[0]];
+
+  // BFS to assign depth layers
+  var nodeDepth = {};
+  var visited = new Set();
+  var queue = [];
+  roots.forEach(function (r) {
+    nodeDepth[r.id] = 0;
+    visited.add(r.id);
+    queue.push(r.id);
+  });
+
+  // Build adjacency (both directions for better BFS coverage)
+  var adj = {};
+  edgeData.forEach(function (e) {
+    var srcId = typeof e.source === 'object' ? e.source.id : e.source;
+    var tgtId = typeof e.target === 'object' ? e.target.id : e.target;
+    if (!adj[srcId]) adj[srcId] = [];
+    adj[srcId].push(tgtId);
+    if (!adj[tgtId]) adj[tgtId] = [];
+    adj[tgtId].push(srcId);
+  });
+
+  while (queue.length > 0) {
+    var current = queue.shift();
+    var neighbors = adj[current] || [];
+    neighbors.forEach(function (n) {
+      if (!visited.has(n)) {
+        visited.add(n);
+        nodeDepth[n] = (nodeDepth[current] || 0) + 1;
+        queue.push(n);
+      }
+    });
+  }
+
+  // Assign depth 0 to unvisited (truly disconnected) nodes
+  visibleNodes.forEach(function (d) {
+    if (nodeDepth[d.id] == null) nodeDepth[d.id] = 0;
+  });
+
+  // Group by depth
+  var layers = {};
+  visibleNodes.forEach(function (d) {
+    var depth = nodeDepth[d.id];
+    if (!layers[depth]) layers[depth] = [];
+    layers[depth].push(d);
+  });
+
+  var layerKeys = Object.keys(layers).map(Number).sort(function (a, b) { return a - b; });
+  var nodeGap = 60;
+  var rowGap = 50;
+  var layerGap = 100;
+  var maxRowWidth = Math.max(width * 1.5, 800);
+  var cx = width / 2;
+  var currentY = 80;
+
+  layerKeys.forEach(function (depth) {
+    var nodesInLayer = layers[depth];
+    // Calculate columns per row to fit within maxRowWidth
+    var cols = Math.max(1, Math.floor(maxRowWidth / nodeGap));
+    var rows = Math.ceil(nodesInLayer.length / cols);
+    var actualCols = Math.min(cols, nodesInLayer.length);
+    var layerWidth = actualCols * nodeGap;
+    var startX = cx - layerWidth / 2 + nodeGap / 2;
+
+    nodesInLayer.forEach(function (d, i) {
+      var col = i % cols;
+      var row = Math.floor(i / cols);
+      d.x = startX + col * nodeGap;
+      d.y = currentY + row * rowGap;
+      d.fx = d.x;
+      d.fy = d.y;
+    });
+
+    currentY += rows * rowGap + layerGap;
+  });
+
+  // Re-render with fixed positions
+  renderGraph();
+  setTimeout(function () { fitToView(); }, 200);
+}
+
+function applyConcentricLayout() {
+  isStaticLayout = true;
+  if (simulation) simulation.stop();
+
+  var visibleNodes = nodeData.filter(function (d) { return !d.hidden; });
+  if (visibleNodes.length === 0) return;
+
+  var width = containerEl ? containerEl.clientWidth : 800;
+  var height = containerEl ? containerEl.clientHeight : 600;
+  var cx = width / 2;
+  var cy = height / 2;
+
+  var typePriority = { Project: 0, File: 1, Reference: 2, Decision: 3, Problem: 4, Solution: 4 };
+
+  // Group by ring
+  var rings = {};
+  visibleNodes.forEach(function (d) {
+    var ring = typePriority[d.type] != null ? typePriority[d.type] : 4;
+    if (!rings[ring]) rings[ring] = [];
+    rings[ring].push(d);
+  });
+
+  var ringKeys = Object.keys(rings).map(Number).sort(function (a, b) { return a - b; });
+  // Dynamic ring spacing: ensure nodes don't overlap on each ring
+  var baseSpacing = 100;
+
+  ringKeys.forEach(function (ring, ringIndex) {
+    var nodesInRing = rings[ring];
+    // Ensure minimum arc spacing between nodes on each ring
+    var minArcGap = 30;
+    var minRadius = (nodesInRing.length * minArcGap) / (2 * Math.PI);
+    var radius = Math.max((ringIndex + 1) * baseSpacing, minRadius);
+    nodesInRing.forEach(function (d, i) {
+      var angle = (2 * Math.PI * i) / nodesInRing.length;
+      d.x = cx + radius * Math.cos(angle);
+      d.y = cy + radius * Math.sin(angle);
+      d.fx = d.x;
+      d.fy = d.y;
+    });
+  });
+
+  // Re-render with fixed positions
+  renderGraph();
+  setTimeout(function () { fitToView(); }, 200);
+}
+
+function applyCommunitiesLayout() {
+  isStaticLayout = false;
+  var params = new URLSearchParams();
+  if (window.laminarkState && window.laminarkState.currentProject) {
+    params.set('project', window.laminarkState.currentProject);
+  }
+
+  fetch('/api/graph/communities' + (params.toString() ? '?' + params.toString() : ''))
+    .then(function (res) { return res.json(); })
+    .then(function (data) {
+      if (data.communities) {
+        applyCommunityColors(data.communities);
+
+        var width = containerEl ? containerEl.clientWidth : 800;
+        var height = containerEl ? containerEl.clientHeight : 600;
+        var cx = width / 2;
+        var cy = height / 2;
+
+        // Arrange community centers in a circle
+        var communities = data.communities;
+        var commRadius = Math.min(width, height) * 0.3;
+
+        communities.forEach(function (comm, i) {
+          var angle = (2 * Math.PI * i) / communities.length;
+          var commCx = cx + commRadius * Math.cos(angle);
+          var commCy = cy + commRadius * Math.sin(angle);
+          comm.nodeIds.forEach(function (nodeId) {
+            var node = nodeData.find(function (d) { return d.id === nodeId; });
+            if (node) {
+              // Set initial position near community center with some jitter
+              node.x = commCx + (Math.random() - 0.5) * 60;
+              node.y = commCy + (Math.random() - 0.5) * 60;
+            }
+          });
+        });
+      }
+
+      // Reset fixed positions and re-render
+      nodeData.forEach(function (d) { d.fx = null; d.fy = null; });
+      renderGraph();
+      setTimeout(function () { fitToView(); }, 800);
+    })
+    .catch(function (err) {
+      console.error('[laminark:graph] Failed to fetch communities:', err);
+      applyClusteredLayout();
+    });
+}
+
+// ---------------------------------------------------------------------------
+// Detangle layout — minimizes edge crossings via custom force
+// ---------------------------------------------------------------------------
+
+/**
+ * Tests whether line segment (p1→p2) crosses (p3→p4).
+ * Returns true if the segments properly intersect.
+ */
+function segmentsIntersect(p1x, p1y, p2x, p2y, p3x, p3y, p4x, p4y) {
+  var d1x = p2x - p1x, d1y = p2y - p1y;
+  var d2x = p4x - p3x, d2y = p4y - p3y;
+  var cross = d1x * d2y - d1y * d2x;
+  if (Math.abs(cross) < 1e-10) return false;
+  var t = ((p3x - p1x) * d2y - (p3y - p1y) * d2x) / cross;
+  var u = ((p3x - p1x) * d1y - (p3y - p1y) * d1x) / cross;
+  return t > 0.01 && t < 0.99 && u > 0.01 && u < 0.99;
+}
+
+/**
+ * Custom D3 force that detects edge crossings and pushes nodes apart
+ * to untangle the graph. Runs O(E^2) per tick — fine for <1000 edges.
+ */
+function forceUncross(edges) {
+  var strength = 8;
+  var nodes;
+
+  function force(alpha) {
+    if (!nodes || edges.length < 2) return;
+    var effectiveStrength = strength * alpha;
+
+    for (var i = 0; i < edges.length; i++) {
+      var e1 = edges[i];
+      var s1 = e1.source, t1 = e1.target;
+      if (!s1 || !t1 || s1.x == null || t1.x == null) continue;
+
+      for (var j = i + 1; j < edges.length; j++) {
+        var e2 = edges[j];
+        var s2 = e2.source, t2 = e2.target;
+        if (!s2 || !t2 || s2.x == null || t2.x == null) continue;
+
+        // Skip if edges share a node
+        if (s1 === s2 || s1 === t2 || t1 === s2 || t1 === t2) continue;
+
+        if (segmentsIntersect(s1.x, s1.y, t1.x, t1.y, s2.x, s2.y, t2.x, t2.y)) {
+          // Push the midpoints of the two edges apart
+          var m1x = (s1.x + t1.x) / 2, m1y = (s1.y + t1.y) / 2;
+          var m2x = (s2.x + t2.x) / 2, m2y = (s2.y + t2.y) / 2;
+          var dx = m1x - m2x, dy = m1y - m2y;
+          var dist = Math.sqrt(dx * dx + dy * dy) || 1;
+          var push = effectiveStrength / dist;
+          var fx = dx * push, fy = dy * push;
+
+          // Apply to non-fixed nodes of edge 1 (push away from edge 2)
+          if (s1.fx == null) { s1.vx += fx * 0.5; s1.vy += fy * 0.5; }
+          if (t1.fx == null) { t1.vx += fx * 0.5; t1.vy += fy * 0.5; }
+          // Apply to non-fixed nodes of edge 2 (push opposite direction)
+          if (s2.fx == null) { s2.vx -= fx * 0.5; s2.vy -= fy * 0.5; }
+          if (t2.fx == null) { t2.vx -= fx * 0.5; t2.vy -= fy * 0.5; }
+        }
+      }
+    }
+  }
+
+  force.initialize = function (_nodes) { nodes = _nodes; };
+  force.strength = function (s) { if (!arguments.length) return strength; strength = s; return force; };
+
+  return force;
+}
+
+function applyDetangleLayout() {
+  isStaticLayout = false;
+  nodeData.forEach(function (d) { d.fx = null; d.fy = null; });
+
+  // Let renderGraph create the standard simulation first (it calls createSimulation)
+  renderGraph();
+
+  // Now enhance the existing simulation with the uncross force
+  if (simulation) {
+    var simNodeIds = new Set(nodeData.filter(function (d) { return !d.hidden; }).map(function (d) { return d.id; }));
+    var visibleEdges = edgeData.filter(function (d) {
+      var srcId = typeof d.source === 'object' ? d.source.id : d.source;
+      var tgtId = typeof d.target === 'object' ? d.target.id : d.target;
+      return simNodeIds.has(srcId) && simNodeIds.has(tgtId);
+    });
+
+    var width = containerEl ? containerEl.clientWidth : 800;
+    var height = containerEl ? containerEl.clientHeight : 600;
+
+    // Widen link distances and strengthen repulsion for more spacing
+    simulation
+      .force('link', d3.forceLink(visibleEdges)
+        .id(function (d) { return d.id; })
+        .distance(function (d) {
+          var srcDeg = (typeof d.source === 'object' ? d.source._degree : 0) || 0;
+          var tgtDeg = (typeof d.target === 'object' ? d.target._degree : 0) || 0;
+          return 140 + Math.sqrt(srcDeg + tgtDeg) * 25;
+        })
+        .strength(0.8))
+      .force('collide', d3.forceCollide().radius(function (d) {
+        return getNodeSize(d) + 20;
+      }).strength(1))
+      .force('uncross', forceUncross(visibleEdges).strength(12))
+      .force('x', d3.forceX(width / 2).strength(0.02))
+      .force('y', d3.forceY(height / 2).strength(0.02))
+      .alphaDecay(0.01)
+      .velocityDecay(0.4)
+      .alpha(1)
+      .restart();
+  }
+
+  setTimeout(function () { fitToView(); }, 1500);
+}
+
+function initLayoutSelector() {
+  var btns = document.querySelectorAll('.layout-btn');
+  btns.forEach(function (btn) {
+    btn.classList.toggle('active', btn.getAttribute('data-layout') === currentLayout);
+    btn.addEventListener('click', function () {
+      setLayout(btn.getAttribute('data-layout'));
+    });
+  });
+}
+
+// ---------------------------------------------------------------------------
+// Community coloring
+// ---------------------------------------------------------------------------
+
+function applyCommunityColors(communities) {
+  communityNodeMap = {};
+  communityColorMap = {};
+  communities.forEach(function (comm) {
+    comm.nodeIds.forEach(function (nodeId) {
+      communityNodeMap[nodeId] = comm.id;
+      communityColorMap[nodeId] = comm.color;
+    });
+  });
+
+  // Update node colors
+  if (nodesGroup) {
+    nodesGroup.selectAll('.node-group path.node-shape')
+      .attr('fill', function (d) {
+        if (communityColorMap[d.id]) return communityColorMap[d.id];
+        return ENTITY_STYLES[d.type] ? ENTITY_STYLES[d.type].color : '#8b949e';
+      });
+  }
+}
+
+function clearCommunityColors() {
+  communityNodeMap = {};
+  communityColorMap = {};
+  if (nodesGroup) {
+    nodesGroup.selectAll('.node-group path.node-shape')
+      .attr('fill', function (d) {
+        return ENTITY_STYLES[d.type] ? ENTITY_STYLES[d.type].color : '#8b949e';
+      });
+  }
+}
+
+// ---------------------------------------------------------------------------
+// Show linked nodes of type (context menu action)
+// ---------------------------------------------------------------------------
+
+async function showLinkedNodesOfType(nodeId, nodeLabel, filterType) {
+  if (!svg || _focusFetching) return;
+
+  if (!isFocusMode) {
+    cachedFullData = {
+      nodes: nodeData.map(function (d) {
+        var copy = Object.assign({}, d);
+        delete copy.x; delete copy.y; delete copy.vx; delete copy.vy;
+        delete copy.fx; delete copy.fy; delete copy.index;
+        return copy;
+      }),
+      edges: edgeData.map(function (d) {
+        return {
+          id: d.id,
+          source: typeof d.source === 'object' ? d.source.id : d.source,
+          target: typeof d.target === 'object' ? d.target.id : d.target,
+          type: d.type,
+          label: d.label,
+        };
+      }),
+    };
+  }
+
+  var data;
+  try {
+    var res = await fetch('/api/node/' + encodeURIComponent(nodeId) + '/neighborhood?depth=1');
+    if (!res.ok) throw new Error('HTTP ' + res.status);
+    data = await res.json();
+  } catch (err) {
+    console.error('[laminark:graph] Failed to fetch neighborhood:', err);
+    return;
+  }
+
+  if (!data.nodes || data.nodes.length === 0) return;
+
+  var keepIds = new Set();
+  keepIds.add(nodeId);
+  data.nodes.forEach(function (n) {
+    if (n.id === nodeId || n.type === filterType) keepIds.add(n.id);
+  });
+
+  var filteredNodes = data.nodes.filter(function (n) { return keepIds.has(n.id); });
+  if (filteredNodes.length <= 1) {
+    console.log('[laminark:graph] No linked ' + filterType + ' nodes found');
+    return;
+  }
+
+  isFocusMode = true;
+  focusStack.push({ nodeId: nodeId, label: nodeLabel + ' \u2192 ' + filterType });
+
+  nodeData = filteredNodes.map(function (node) {
+    return {
+      id: node.id,
+      label: node.label,
+      type: node.type,
+      observationCount: node.observationCount || 0,
+      createdAt: node.createdAt,
+      hidden: false,
+    };
+  });
+
+  edgeData = data.edges
+    .filter(function (edge) { return keepIds.has(edge.source) && keepIds.has(edge.target); })
+    .map(function (edge) {
+      return { id: edge.id, source: edge.source, target: edge.target, type: edge.type, label: edge.type };
+    });
+
+  renderGraph();
+  setTimeout(function () { fitToView(); }, 600);
+
+  updateBreadcrumbs();
+  updateGraphStatsFromData();
+  console.log('[laminark:graph] Show linked: ' + filterType + ' from', nodeLabel,
+    '(' + filteredNodes.length + ' nodes)');
+}
+
+// ---------------------------------------------------------------------------
+// Context menu
+// ---------------------------------------------------------------------------
+
+function initContextMenu() {
+  if (!containerEl) return;
+
+  contextMenuEl = document.createElement('div');
+  contextMenuEl.className = 'graph-context-menu hidden';
+  containerEl.appendChild(contextMenuEl);
+
+  document.addEventListener('mousedown', function (e) {
+    if (contextMenuVisible && contextMenuEl && !contextMenuEl.contains(e.target)) {
+      hideContextMenu();
+    }
+  });
+
+  document.addEventListener('keydown', function (e) {
+    if (e.key === 'Escape' && contextMenuVisible) hideContextMenu();
+  });
+}
+
+function showContextMenu(x, y, items) {
+  if (!contextMenuEl) return;
+
+  var html = '';
+  items.forEach(function (item) {
+    if (item.type === 'header') {
+      html += '<div class="context-menu-header">' + escapeHtml(item.label) + '</div>';
+    } else if (item.type === 'divider') {
+      html += '<div class="context-menu-divider"></div>';
+    } else if (item.type === 'item') {
+      var dot = item.color
+        ? '<span class="type-dot" style="background:' + item.color + '"></span>'
+        : '';
+      html += '<div class="context-menu-item" data-action="' + escapeHtml(item.action) + '">'
+        + dot + escapeHtml(item.label) + '</div>';
+    }
+  });
+  contextMenuEl.innerHTML = html;
+
+  contextMenuEl.onclick = function (e) {
+    var target = e.target.closest('.context-menu-item');
+    if (target) {
+      var action = target.getAttribute('data-action');
+      var savedTarget = contextMenuTargetNode;
+      hideContextMenu();
+      contextMenuTargetNode = savedTarget;
+      handleContextMenuAction(action);
+      contextMenuTargetNode = null;
+    }
+  };
+
+  contextMenuEl.classList.remove('hidden');
+  contextMenuVisible = true;
+
+  var rect = contextMenuEl.getBoundingClientRect();
+  var vw = window.innerWidth;
+  var vh = window.innerHeight;
+  if (x + rect.width > vw) x = vw - rect.width - 8;
+  if (y + rect.height > vh) y = vh - rect.height - 8;
+  if (x < 0) x = 8;
+  if (y < 0) y = 8;
+
+  contextMenuEl.style.left = x + 'px';
+  contextMenuEl.style.top = y + 'px';
+}
+
+function escapeHtml(str) {
+  var div = document.createElement('div');
+  div.textContent = str;
+  return div.innerHTML;
+}
+
+function hideContextMenu() {
+  if (contextMenuEl) contextMenuEl.classList.add('hidden');
+  contextMenuVisible = false;
+  contextMenuTargetNode = null;
+}
+
+function handleContextMenuAction(action) {
+  if (!action) return;
+
+  if (action.startsWith('filter-type:')) {
+    var type = action.split(':')[1];
+    setActiveTypes([type]);
+    syncFilterPills();
+  } else if (action.startsWith('show-linked:')) {
+    var filterType = action.split(':')[1];
+    if (contextMenuTargetNode) {
+      showLinkedNodesOfType(contextMenuTargetNode.id, contextMenuTargetNode.label, filterType);
+    }
+  } else if (action === 'focus') {
+    if (contextMenuTargetNode) {
+      enterFocusMode(contextMenuTargetNode.id, contextMenuTargetNode.label);
+    }
+  } else if (action === 'relayout') {
+    setLayout(currentLayout);
+  } else if (action === 'reset-filters') {
+    resetFilters();
+    syncFilterPills();
+  } else if (action === 'fit') {
+    fitToView();
+  }
+}
+
+function syncFilterPills() {
+  var allTypes = Object.keys(ENTITY_STYLES);
+  var allActive = activeEntityTypes.size === allTypes.length;
+
+  allTypes.forEach(function (type) {
+    var pill = document.querySelector('.filter-pill[data-type="' + type + '"]');
+    if (pill) pill.classList.toggle('active', activeEntityTypes.has(type));
+  });
+
+  var allPill = document.querySelector('.filter-pill[data-type="all"]');
+  if (allPill) allPill.classList.toggle('active', allActive);
+}
+
+// Initialize layout selector when DOM is ready
+if (document.readyState === 'loading') {
+  document.addEventListener('DOMContentLoaded', initLayoutSelector);
+} else {
+  initLayoutSelector();
+}
+
+// ---------------------------------------------------------------------------
+// Freeze button (pauses SSE-driven refreshes) + Sync button (reload stale data)
+// ---------------------------------------------------------------------------
+
+function initFreezeButton() {
+  // Add freeze toggle to the toolbar (toolbar is sibling of containerEl, not inside it)
+  var graphArea = containerEl ? containerEl.parentElement : null;
+  var toolbar = graphArea ? graphArea.querySelector('.graph-toolbar') : null;
+  if (!toolbar) return;
+
+  freezeBtnEl = document.createElement('button');
+  freezeBtnEl.className = 'graph-freeze-btn';
+  freezeBtnEl.title = 'Pause live updates';
+  freezeBtnEl.innerHTML = '<svg width="14" height="14" viewBox="0 0 16 16" fill="currentColor"><path d="M5.5 3.5A1.5 1.5 0 0 1 7 5v6a1.5 1.5 0 0 1-3 0V5a1.5 1.5 0 0 1 1.5-1.5zm5 0A1.5 1.5 0 0 1 12 5v6a1.5 1.5 0 0 1-3 0V5a1.5 1.5 0 0 1 1.5-1.5z"/></svg>';
+  freezeBtnEl.addEventListener('click', function () {
+    toggleGraphFrozen();
+  });
+  // Insert before the fit button (last in toolbar)
+  var fitBtn = toolbar.querySelector('.fit-btn');
+  if (fitBtn) {
+    toolbar.insertBefore(freezeBtnEl, fitBtn);
+  } else {
+    toolbar.appendChild(freezeBtnEl);
+  }
+}
+
+function toggleGraphFrozen() {
+  graphFrozen = !graphFrozen;
+  updateFreezeButton();
+
+  if (!graphFrozen && graphStale) {
+    // Unfreeze: reload pending data
+    graphStale = false;
+    clearPathfinder();
+    loadGraphData();
+    updateSyncButton();
+  }
+}
+
+function setGraphFrozen(frozen) {
+  graphFrozen = frozen;
+  updateFreezeButton();
+}
+
+function updateFreezeButton() {
+  if (!freezeBtnEl) return;
+  freezeBtnEl.classList.toggle('active', graphFrozen);
+  freezeBtnEl.title = graphFrozen ? 'Resume live updates' : 'Pause live updates';
+  // Swap icon: pause when live, play when frozen
+  if (graphFrozen) {
+    freezeBtnEl.innerHTML = '<svg width="14" height="14" viewBox="0 0 16 16" fill="currentColor"><path d="M4 2l10 6-10 6V2z"/></svg>';
+  } else {
+    freezeBtnEl.innerHTML = '<svg width="14" height="14" viewBox="0 0 16 16" fill="currentColor"><path d="M5.5 3.5A1.5 1.5 0 0 1 7 5v6a1.5 1.5 0 0 1-3 0V5a1.5 1.5 0 0 1 1.5-1.5zm5 0A1.5 1.5 0 0 1 12 5v6a1.5 1.5 0 0 1-3 0V5a1.5 1.5 0 0 1 1.5-1.5z"/></svg>';
+  }
+}
+
+function initSyncButton() {
+  if (!containerEl) return;
+  syncBtnEl = document.createElement('button');
+  syncBtnEl.className = 'graph-sync-btn hidden';
+  syncBtnEl.innerHTML = '<svg width="14" height="14" viewBox="0 0 16 16" fill="currentColor"><path d="M1.5 8a6.5 6.5 0 0 1 11.25-4.4l-1.54 1.54A.5.5 0 0 0 11.56 6H15.5a.5.5 0 0 0 .5-.5V1.56a.5.5 0 0 0-.85-.35L13.6 2.76A8 8 0 0 0 0 8h1.5zm13 0a6.5 6.5 0 0 1-11.25 4.4l1.54-1.54A.5.5 0 0 0 4.44 10H.5a.5.5 0 0 0-.5.5v3.94a.5.5 0 0 0 .85.35l1.55-1.55A8 8 0 0 0 16 8h-1.5z"/></svg> Sync';
+  syncBtnEl.addEventListener('click', function () {
+    graphStale = false;
+    graphFrozen = false;
+    updateFreezeButton();
+    clearPathfinder();
+    loadGraphData();
+    updateSyncButton();
+  });
+  containerEl.appendChild(syncBtnEl);
+}
+
+function updateSyncButton() {
+  if (!syncBtnEl) return;
+  if (graphStale && graphFrozen) {
+    syncBtnEl.classList.remove('hidden');
+    syncBtnEl.classList.add('stale');
+  } else {
+    syncBtnEl.classList.add('hidden');
+    syncBtnEl.classList.remove('stale');
+  }
+}
+
+// ---------------------------------------------------------------------------
+// Pathfinder: shortest path between two nodes
+// ---------------------------------------------------------------------------
+
+function initPathfinderToggle() {
+  var btn = document.getElementById('paths-toggle-btn');
+  if (!btn) return;
+
+  btn.classList.toggle('active', pathfinderActive);
+
+  btn.addEventListener('click', function () {
+    pathfinderActive = !pathfinderActive;
+    btn.classList.toggle('active', pathfinderActive);
+    if (!pathfinderActive) {
+      clearPathfinder();
+    }
+  });
+}
+
+function handlePathfinderClick(d) {
+  if (pathfinderSelection.length === 0) {
+    // First node selected
+    pathfinderSelection = [d.id];
+    pathfinderResult = null;
+    clearPathfinderVisuals();
+    if (nodesGroup) {
+      nodesGroup.selectAll('.node-group')
+        .classed('pathfinder-start', function (n) { return n.id === d.id; })
+        .classed('pathfinder-end', false);
+    }
+    updatePathfinderInfo('Select target node...');
+  } else if (pathfinderSelection.length === 1) {
+    if (pathfinderSelection[0] === d.id) return; // Same node
+    pathfinderSelection.push(d.id);
+
+    // Mark end node
+    if (nodesGroup) {
+      nodesGroup.selectAll('.node-group')
+        .classed('pathfinder-end', function (n) { return n.id === d.id; });
+    }
+
+    // Run BFS
+    var result = bfsShortestPath(pathfinderSelection[0], pathfinderSelection[1]);
+    if (result) {
+      pathfinderResult = result;
+      visualizePathfinderResult(result);
+      // Auto-freeze to protect the path visualization
+      setGraphFrozen(true);
+    } else {
+      updatePathfinderInfo('No path found between these nodes');
+    }
+  } else {
+    // Already have 2 — restart with this node as new start
+    pathfinderSelection = [d.id];
+    pathfinderResult = null;
+    clearPathfinderVisuals();
+    if (nodesGroup) {
+      nodesGroup.selectAll('.node-group')
+        .classed('pathfinder-start', function (n) { return n.id === d.id; })
+        .classed('pathfinder-end', false);
+    }
+    updatePathfinderInfo('Select target node...');
+  }
+}
+
+function bfsShortestPath(startId, endId) {
+  // Build adjacency from edgeData (treat as undirected)
+  var adj = {};
+  edgeData.forEach(function (e) {
+    var srcId = typeof e.source === 'object' ? e.source.id : e.source;
+    var tgtId = typeof e.target === 'object' ? e.target.id : e.target;
+    if (!adj[srcId]) adj[srcId] = [];
+    if (!adj[tgtId]) adj[tgtId] = [];
+    adj[srcId].push({ nodeId: tgtId, edgeId: e.id });
+    adj[tgtId].push({ nodeId: srcId, edgeId: e.id });
+  });
+
+  // BFS
+  var visited = new Set();
+  visited.add(startId);
+  var queue = [{ nodeId: startId, path: [{ nodeId: startId, edgeId: null }] }];
+
+  while (queue.length > 0) {
+    var current = queue.shift();
+    if (current.nodeId === endId) {
+      // Build result sets
+      var nodeIds = new Set();
+      var edgeIds = new Set();
+      var relTypes = [];
+      current.path.forEach(function (step) {
+        nodeIds.add(step.nodeId);
+        if (step.edgeId) {
+          edgeIds.add(step.edgeId);
+          var edge = edgeData.find(function (e) { return e.id === step.edgeId; });
+          if (edge) relTypes.push(edge.type);
+        }
+      });
+      return { nodeIds: nodeIds, edgeIds: edgeIds, path: current.path, relTypes: relTypes };
+    }
+
+    var neighbors = adj[current.nodeId] || [];
+    for (var i = 0; i < neighbors.length; i++) {
+      var nb = neighbors[i];
+      if (!visited.has(nb.nodeId)) {
+        visited.add(nb.nodeId);
+        queue.push({
+          nodeId: nb.nodeId,
+          path: current.path.concat([{ nodeId: nb.nodeId, edgeId: nb.edgeId }]),
+        });
+      }
+    }
+  }
+
+  return null; // No path found
+}
+
+function visualizePathfinderResult(result) {
+  if (!nodesGroup || !edgesGroup) return;
+
+  // Dim non-path nodes
+  nodesGroup.selectAll('.node-group')
+    .classed('search-dimmed', function (d) { return !result.nodeIds.has(d.id); })
+    .classed('pathfinder-start', function (d) { return d.id === pathfinderSelection[0]; })
+    .classed('pathfinder-end', function (d) { return d.id === pathfinderSelection[1]; });
+
+  nodeLabelsGroup.selectAll('.node-label')
+    .classed('search-dimmed', function (d) { return !result.nodeIds.has(d.id); });
+
+  // Dim non-path edges, highlight path edges
+  edgesGroup.selectAll('.edge')
+    .classed('search-dimmed', function (d) { return !result.edgeIds.has(d.id); })
+    .classed('path-highlight', function (d) { return result.edgeIds.has(d.id); });
+
+  edgeLabelsGroup.selectAll('.edge-label')
+    .classed('search-dimmed', function (d) { return !result.edgeIds.has(d.id); });
+
+  // Show info
+  var hops = result.path.length - 1;
+  var types = result.relTypes.join(' > ');
+  updatePathfinderInfo(hops + ' hop' + (hops !== 1 ? 's' : '') + ': ' + types);
+}
+
+function clearPathfinder() {
+  pathfinderSelection = [];
+  pathfinderResult = null;
+  clearPathfinderVisuals();
+  hidePathfinderInfo();
+}
+
+function clearPathfinderVisuals() {
+  if (!nodesGroup) return;
+  nodesGroup.selectAll('.node-group')
+    .classed('pathfinder-start', false)
+    .classed('pathfinder-end', false)
+    .classed('search-dimmed', false);
+  nodeLabelsGroup.selectAll('.node-label')
+    .classed('search-dimmed', false);
+  edgesGroup.selectAll('.edge')
+    .classed('search-dimmed', false)
+    .classed('path-highlight', false);
+  edgeLabelsGroup.selectAll('.edge-label')
+    .classed('search-dimmed', false);
+}
+
+function updatePathfinderInfo(text) {
+  if (!containerEl) return;
+  if (!pathfinderInfoEl) {
+    pathfinderInfoEl = document.createElement('div');
+    pathfinderInfoEl.className = 'pathfinder-info';
+    containerEl.appendChild(pathfinderInfoEl);
+  }
+  pathfinderInfoEl.textContent = text;
+  pathfinderInfoEl.style.display = '';
+}
+
+function hidePathfinderInfo() {
+  if (pathfinderInfoEl) pathfinderInfoEl.style.display = 'none';
+}
+
+// ---------------------------------------------------------------------------
+// Exports
+// ---------------------------------------------------------------------------
+
+window.laminarkGraph = {
+  initGraph: initGraph,
+  loadGraphData: loadGraphData,
+  addNode: addNode,
+  addEdge: addEdge,
+  removeElements: removeElements,
+  fitToView: fitToView,
+  applyFilter: applyFilter,
+  filterByType: filterByType,
+  filterByTimeRange: filterByTimeRange,
+  resetFilters: resetFilters,
+  setActiveTypes: setActiveTypes,
+  getTypeCounts: getTypeCounts,
+  updateFilterCounts: updateFilterCounts,
+  hideDetailPanel: hideDetailPanel,
+  selectAndCenterNode: selectAndCenterNode,
+  queueBatchUpdate: queueBatchUpdate,
+  clearBatchQueue: clearBatchQueue,
+  togglePerfOverlay: togglePerfOverlay,
+  enterFocusMode: enterFocusMode,
+  exitFocusMode: exitFocusMode,
+  setLayout: setLayout,
+  isFocusMode: function () { return isFocusMode; },
+  ENTITY_STYLES: ENTITY_STYLES,
+  getCy: function () { return null; }, // Compatibility stub (no longer Cytoscape)
+  searchNodes: searchNodes,
+  highlightSearchMatches: highlightSearchMatches,
+  clearSearchHighlight: clearSearchHighlight,
+  highlightCluster: highlightCluster,
+  applyCommunityColors: applyCommunityColors,
+  clearCommunityColors: clearCommunityColors,
+  showLinkedNodesOfType: showLinkedNodesOfType,
+  hideContextMenu: hideContextMenu,
+  clearPathfinder: clearPathfinder,
+  isPathfinderActive: function () { return pathfinderActive; },
+  isGraphFrozen: function () { return graphFrozen; },
+  toggleGraphFrozen: toggleGraphFrozen,
+  toggleEdgeLabels: function (type) {
+    if (type) {
+      if (hiddenEdgeLabelTypes.has(type)) hiddenEdgeLabelTypes.delete(type);
+      else hiddenEdgeLabelTypes.add(type);
+      persistHiddenEdgeTypes();
+    } else {
+      edgeLabelsVisible = !edgeLabelsVisible;
+      localStorage.setItem('laminark-edge-labels', edgeLabelsVisible ? 'true' : 'false');
+      var btn = document.getElementById('edge-labels-btn');
+      if (btn) btn.classList.toggle('active', edgeLabelsVisible);
+    }
+    applyEdgeLabelVisibility();
+  },
+};