jats-utils 1.0.7 → 1.0.9

package/dist/serialize.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"serialize.d.ts","sourceRoot":"","sources":["../src/serialize.ts"],"names":[],"mappings":"AAAA,OAAO,EAAU,KAAK,OAAO,EAAE,MAAM,QAAQ,CAAC;AAG9C,MAAM,MAAM,oBAAoB,GAAG;IACjC;;;;;OAKG;IACH,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;CAC5C,CAAC;AA+EF,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,OAAO,EAAE,IAAI,CAAC,EAAE,oBAAoB,UAgB7E"}
+{"version":3,"file":"serialize.d.ts","sourceRoot":"","sources":["../src/serialize.ts"],"names":[],"mappings":"AAAA,OAAO,EAAU,KAAK,OAAO,EAAE,MAAM,QAAQ,CAAC;AAG9C,MAAM,MAAM,oBAAoB,GAAG;IACjC;;;;;OAKG;IACH,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;CAC5C,CAAC;AAmFF,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,OAAO,EAAE,IAAI,CAAC,EAAE,oBAAoB,UAgB7E"}

package/dist/serialize.js

@@ -32,7 +32,10 @@ const both = [
     'body',
     'sec',
     'fig',
+    'statement',
+    'list',
     'disp-formula',
+    'disp-formula-group',
     'table-wrap',
     'caption',
     'table',
@@ -63,6 +66,7 @@ const first = [
     'meta-value',
     'title',
     'p',
+    'license-p',
     'tr',
     'label',
     'graphic',

package/dist/utils.d.ts

@@ -1,12 +1,8 @@
 import type { GenericNode, GenericParent } from 'myst-common';
 import type { Element } from 'xml-js';
-import type { Contributor } from 'myst-frontmatter';
 export declare function convertToUnist(node: Element): GenericNode | GenericParent | undefined;
 export declare function convertToXml(node: GenericNode): Element;
 export declare function escapeForXML(text: string): string;
 export declare function toDate(date?: GenericParent): Date | undefined;
 export declare function formatDate(date?: Date): string | undefined;
-export type PubIdTypes = 'doi' | 'pmc' | 'pmid' | 'publisher-id' | string;
-export declare function findArticleId(node: GenericParent | undefined, pubIdType?: PubIdTypes): string | undefined;
-export declare function authorAndAffiliation(node: GenericParent, article: GenericParent): Contributor;
 //# sourceMappingURL=utils.d.ts.map

package/dist/utils.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["../src/utils.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAE9D,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,QAAQ,CAAC;AAKtC,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAEpD,wBAAgB,cAAc,CAAC,IAAI,EAAE,OAAO,GAAG,WAAW,GAAG,aAAa,GAAG,SAAS,CA2CrF;AAED,wBAAgB,YAAY,CAAC,IAAI,EAAE,WAAW,GAAG,OAAO,CAwBvD;AAED,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,UAExC;AA6BD,wBAAgB,MAAM,CAAC,IAAI,CAAC,EAAE,aAAa,GAAG,IAAI,GAAG,SAAS,CAa7D;AAED,wBAAgB,UAAU,CAAC,IAAI,CAAC,EAAE,IAAI,sBAGrC;AAED,MAAM,MAAM,UAAU,GAAG,KAAK,GAAG,KAAK,GAAG,MAAM,GAAG,cAAc,GAAG,MAAM,CAAC;AAE1E,wBAAgB,aAAa,CAC3B,IAAI,EAAE,aAAa,GAAG,SAAS,EAC/B,SAAS,GAAE,UAAkB,GAC5B,MAAM,GAAG,SAAS,CAQpB;AAED,wBAAgB,oBAAoB,CAAC,IAAI,EAAE,aAAa,EAAE,OAAO,EAAE,aAAa,GAAG,WAAW,CAyC7F"}
+{"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["../src/utils.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAE9D,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,QAAQ,CAAC;AAGtC,wBAAgB,cAAc,CAAC,IAAI,EAAE,OAAO,GAAG,WAAW,GAAG,aAAa,GAAG,SAAS,CA2CrF;AAED,wBAAgB,YAAY,CAAC,IAAI,EAAE,WAAW,GAAG,OAAO,CAwBvD;AAED,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,UAExC;AA6BD,wBAAgB,MAAM,CAAC,IAAI,CAAC,EAAE,aAAa,GAAG,IAAI,GAAG,SAAS,CAa7D;AAED,wBAAgB,UAAU,CAAC,IAAI,CAAC,EAAE,IAAI,sBAGrC"}

package/dist/utils.js

@@ -1,7 +1,5 @@
 import { toText } from 'myst-common';
-import { doi } from 'doi-utils';
-import { select, selectAll } from 'unist-util-select';
-import { Tags } from 'jats-tags';
+import { select } from 'unist-util-select';
 export function convertToUnist(node) {
     switch (node.type) {
         case 'element': {
@@ -128,52 +126,3 @@ export function formatDate(date) {
         return;
     return new Intl.DateTimeFormat('en-US', { dateStyle: 'long', timeZone: 'UTC' }).format(date);
 }
-export function findArticleId(node, pubIdType = 'doi') {
-    if (!node)
-        return undefined;
-    const id = select(`[pub-id-type=${pubIdType}]`, node);
-    if (id && toText(id))
-        return toText(id);
-    const doiTag = selectAll(`${Tags.articleId},${Tags.pubId}`, node).find((t) => doi.validate(toText(t)));
-    return toText(doiTag) || undefined;
-}
-export function authorAndAffiliation(node, article) {
-    const author = {
-        name: `${toText(select(Tags.givenNames, node))} ${toText(select(Tags.surname, node))}`,
-    };
-    const orcid = select('[contrib-id-type=orcid]', node);
-    if (orcid) {
-        author.orcid = toText(orcid).replace(/(https?:\/\/)?orcid\.org\//, '');
-    }
-    //
-    /**
-     * For example:
-     *
-     * ```xml
-     * <aff id="aff2">
-     * <label>2</label>
-     * <institution-wrap>
-     * <institution-id institution-id-type="ror">https://ror.org/00t9vx427</institution-id>
-     * <institution>Department of Biochemistry, University of Texas Southwestern Medical Center</institution>
-     * </institution-wrap>
-     * <addr-line>
-     * <named-content content-type="city">Dallas</named-content>
-     * </addr-line>
-     * <country>United States</country>
-     * </aff>
-     * ```
-     */
-    const affiliationRefs = selectAll('xref[ref-type=aff]', node);
-    const affiliations = affiliationRefs.map((xref) => select(`[id=${xref.rid}]`, article));
-    const affiliationText = affiliations
-        .map((aff) => {
-        // TODO: handle rors!
-        const ror = select(`[institution-id-type=ror]`, aff);
-        return toText(select('institution', aff));
-    })
-        .filter((t) => !!t);
-    if (affiliationText.length > 0) {
-        author.affiliations = affiliationText;
-    }
-    return author;
-}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "jats-utils",
-  "version": "1.0.7",
+  "version": "1.0.9",
   "description": "Utility functions for working with JATS in Typescript",
   "author": "Rowan Cockett <rowan@curvenote.com>",
   "homepage": "https://github.com/curvenote/jats",
@@ -34,13 +34,15 @@
   "bugs": {
     "url": "https://github.com/curvenote/jats/issues"
   },
-  "dependencies": {},
+  "dependencies": {
+    "unist-util-select": "^4.0.0"
+  },
   "peerDependencies": {
     "xml-js": "^1",
-    "jats-tags": "^1"
+    "jats-tags": "^1.0.9"
   },
   "devDependencies": {
     "myst-common": "^1.0.0",
-    "jats-tags": "^1"
+    "jats-tags": "^1.0.9"
   }
 }