gramene-search 1.2.23 → 1.2.26

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (33) hide show
  1. package/.parcel-cache/152df5ea0989596e.txt +2 -0
  2. package/.parcel-cache/2b1c1cd7b577d2ca.txt +2 -2
  3. package/.parcel-cache/data.mdb +0 -0
  4. package/.parcel-cache/lock.mdb +0 -0
  5. package/dist/android-chrome-192x192.1c3e8367.png +0 -0
  6. package/dist/apple-touch-icon-114x114.bfffc776.png +0 -0
  7. package/dist/apple-touch-icon-120x120.36d8566f.png +0 -0
  8. package/dist/apple-touch-icon-144x144.878f9d29.png +0 -0
  9. package/dist/apple-touch-icon-152x152.6d1217c5.png +0 -0
  10. package/dist/apple-touch-icon-180x180.0d30a358.png +0 -0
  11. package/dist/apple-touch-icon-57x57.c3d92f4e.png +0 -0
  12. package/dist/apple-touch-icon-60x60.0cfc5a34.png +0 -0
  13. package/dist/apple-touch-icon-72x72.9c44ac8c.png +0 -0
  14. package/dist/apple-touch-icon-76x76.5a933f46.png +0 -0
  15. package/dist/favicon-16x16.3e40b283.png +0 -0
  16. package/dist/favicon-32x32.6ebd8f52.png +0 -0
  17. package/dist/favicon-96x96.ef44eb0f.png +0 -0
  18. package/dist/genetree.d667cd90.png +0 -0
  19. package/dist/grapevine.cd0ac19f.css +2053 -0
  20. package/dist/grapevine.cd0ac19f.css.map +1 -0
  21. package/dist/grapevine.d2bab208.js +270809 -0
  22. package/dist/grapevine.d2bab208.js.map +1 -0
  23. package/dist/grapevine.fd6dee1b.js +16539 -0
  24. package/dist/grapevine.fd6dee1b.js.map +1 -0
  25. package/dist/grapevine.html +1427 -0
  26. package/dist/index.js +3 -1
  27. package/dist/index.js.map +1 -1
  28. package/dist/results.c14120ff.png +0 -0
  29. package/dist/suggestions.74bf4636.png +0 -0
  30. package/package.json +1 -1
  31. package/src/bundles/filters.js +5 -2
  32. package/src/components/results/details/Expression.js +3 -1
  33. package/src/components/results/details/location/dallianceBrowser.js +2 -2
@@ -0,0 +1,2053 @@
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+ .subsite-header {
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+ background-color: #fcfeec;
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+ height: 45px;
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+ font-size: small;
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+ }
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+ .mdview h2 {
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+ scroll-margin-top: 120px;
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+ }
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+ .visible-detail {
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+ border: 1px solid #557B74;
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+ padding: 6px 12px;
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+ }
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+ .detail {
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+ margin-right: auto;
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+ margin-left: auto;
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+ padding-left: 15px;
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+ padding-right: 15px;
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+ }
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+ .table {
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+ width: 100%;
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+ max-width: 100%;
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+ }
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+ .xrefs {
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+ border-collapse: collapse;
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+ border-spacing: 0;
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+ border-color: grey;
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+ table-layout: fixed;
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+ }
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+ .xref-name-col {
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+ width: 20%;
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+ }
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+ .xref-value-col {
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+ width: 80%;
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+ }
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+ .xref-id-list {
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+ padding-left: 0;
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+ list-style: none;
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+ }
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+ .result-gene {
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+ padding: 0.2em;
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+ border: 5px solid white;
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+ }
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+ .result-gene:hover {
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+ border-color: antiquewhite;
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+ }
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+ .gene-title {
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+ padding-top:0.5em;
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+ }
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+ .gene-id {
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+ white-space: nowrap;
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+ }
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+ .gene-name {
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+ color: #557B74;
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+ }
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+ .gene-description {
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+ margin-bottom: 0;
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+ }
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+ .gene-species {
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+ white-space: nowrap;
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+ font-style: italic;
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+ padding-left: 1em;
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+ }
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+ .gene-synonyms {
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+ white-space: nowrap;
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+ font-size: small;
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+ }
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+ .gene-extras {
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+ float: right;
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+ border: dashed 1px blue;
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+ }
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+ .gene-detail-tabs {
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+ display: flex;
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+ flex-wrap: wrap;
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+ width: 80em;
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+ }
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+ .gene-detail-tab-closed {
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+ color: darkgreen;
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+ cursor: pointer;
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+ /*background-color: lightgray;*/
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+ }
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+ .gene-detail-tab-disabled {
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+ /*color: white;*/
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+ /*background-color: lightgray;*/
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+ color: lightgray;
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+ cursor: not-allowed;
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+ }
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+ .gene-detail-tab-expanded {
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+ color: white;
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+ background-color: #557B74;
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+ cursor: pointer;
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+ }
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+ .result-gene-summary {
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+ display: flex;
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+ flex-flow: row nowrap;
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+ justify-content: flex-start;
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+ }
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+ .result-gene-summary .species-name {
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+ white-space: nowrap;
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+ font-style: italic;
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+ }
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+ .result-gene-title-body {
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+ flex: 1 1 auto;
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+ width: 1036px;
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+ }
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+ .closest-ortholog, .gene-summary-tair {
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+ cursor: pointer;
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+ flex: 1 1 auto;
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+ width: 500px;
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+ font-size: smaller;
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+ margin-top: 10px;
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+ padding: 0 1rem;
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+ margin-left: 1rem;
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+ border: 1px solid darkorange;
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+ }
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+ .closest-orthologs, .gene-summary-tair > h4, > p {
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+ /*margin: @padding-base-vertical 0;*/
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+ }
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+ /* clear the title (defined in the ::before block below) */
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+ .closest-orthologs, .gene-summary-tair :first-child {
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+ clear: right;
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+ }
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+ .closest-ortholog {
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+ border: 1px dotted darkorange;
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+ }
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+ .gene-summary-tair {
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+ border: 1px dotted darkgreen;
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+ }
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+ .gene-summary-tair .rest {
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+ display: none;
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+ }
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+ .gene-summary-tair:hover .rest {
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+ display: inline;
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+ }
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+ .gene-summary-tair:focus .rest {
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+ display: inline;
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+ }
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+ .gene-summary-tair:hover .ellipsis {
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+ display: none;
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+ }
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+ .gene-summary-tair:focus .ellipsis {
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+ display: none;
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+ }
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+ /* this is the "title" of the closest ortholog box */
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+ .closest-ortholog::before,
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+ .gene-summary-tair::before {
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+ position: relative;
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+ float: right;
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+ margin-top: -12px;
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+ margin-right: 6px;
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+ border: dotted 1px;
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+ padding: 0 1rem;
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+ background: #fff;
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+ }
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+ .closest-ortholog::before {
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+ content: "Model Species Homolog";
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+ color: orange;
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+ }
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+ /* this is the "title" of the closest ortholog box */
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+ .gene-summary-tair::before {
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+ content: "TAIR Curated Description";
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+ color: darkgreen;
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+ }
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+ .gene-search-pic-sugg {
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+ width: 100%;
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+ height: 200px;
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+ background: url("suggestions.74bf4636.png");
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+ background-size: contain;
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+ background-repeat: no-repeat;
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+ }
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+ .gene-search-pic-results {
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+ width: 100%;
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+ height: 200px;
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+ background: url("results.c14120ff.png");
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+ background-size: contain;
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+ background-repeat: no-repeat;
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+ }
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+ .gene-search-pic-genetree {
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+ width: 100%;
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+ height: 200px;
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+ background: url("genetree.d667cd90.png");
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+ background-size: contain;
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+ background-repeat: no-repeat;
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+ }
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+ /*!
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+ * Bootstrap v4.6.0 (https://getbootstrap.com/)
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+ * Copyright 2011-2021 The Bootstrap Authors
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+ * Copyright 2011-2021 Twitter, Inc.
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+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)
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+ */:root{--blue:#007bff;--indigo:#6610f2;--purple:#6f42c1;--pink:#e83e8c;--red:#dc3545;--orange:#fd7e14;--yellow:#ffc107;--green:#28a745;--teal:#20c997;--cyan:#17a2b8;--white:#fff;--gray:#6c757d;--gray-dark:#343a40;--primary:#007bff;--secondary:#6c757d;--success:#28a745;--info:#17a2b8;--warning:#ffc107;--danger:#dc3545;--light:#f8f9fa;--dark:#343a40;--breakpoint-xs:0;--breakpoint-sm:576px;--breakpoint-md:768px;--breakpoint-lg:992px;--breakpoint-xl:1200px;--font-family-sans-serif:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Helvetica Neue",Arial,"Noto Sans","Liberation Sans",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";--font-family-monospace:SFMono-Regular,Menlo,Monaco,Consolas,"Liberation Mono","Courier 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(min-width:1200px){.text-xl-left{text-align:left!important}.text-xl-right{text-align:right!important}.text-xl-center{text-align:center!important}}.text-lowercase{text-transform:lowercase!important}.text-uppercase{text-transform:uppercase!important}.text-capitalize{text-transform:capitalize!important}.font-weight-light{font-weight:300!important}.font-weight-lighter{font-weight:lighter!important}.font-weight-normal{font-weight:400!important}.font-weight-bold{font-weight:700!important}.font-weight-bolder{font-weight:bolder!important}.font-italic{font-style:italic!important}.text-white{color:#fff!important}.text-primary{color:#007bff!important}a.text-primary:focus,a.text-primary:hover{color:#0056b3!important}.text-secondary{color:#6c757d!important}a.text-secondary:focus,a.text-secondary:hover{color:#494f54!important}.text-success{color:#28a745!important}a.text-success:focus,a.text-success:hover{color:#19692c!important}.text-info{color:#17a2b8!important}a.text-info:focus,a.text-info:hover{color:#0f6674!important}.text-warning{color:#ffc107!important}a.text-warning:focus,a.text-warning:hover{color:#ba8b00!important}.text-danger{color:#dc3545!important}a.text-danger:focus,a.text-danger:hover{color:#a71d2a!important}.text-light{color:#f8f9fa!important}a.text-light:focus,a.text-light:hover{color:#cbd3da!important}.text-dark{color:#343a40!important}a.text-dark:focus,a.text-dark:hover{color:#121416!important}.text-body{color:#212529!important}.text-muted{color:#6c757d!important}.text-black-50{color:rgba(0,0,0,.5)!important}.text-white-50{color:rgba(255,255,255,.5)!important}.text-hide{font:0/0 a;color:transparent;text-shadow:none;background-color:transparent;border:0}.text-decoration-none{text-decoration:none!important}.text-break{word-break:break-word!important;word-wrap:break-word!important}.text-reset{color:inherit!important}.visible{visibility:visible!important}.invisible{visibility:hidden!important}@media print{*,::after,::before{text-shadow:none!important;box-shadow:none!important}a:not(.btn){text-decoration:underline}abbr[title]::after{content:" (" attr(title) ")"}pre{white-space:pre-wrap!important}blockquote,pre{border:1px solid #adb5bd;page-break-inside:avoid}thead{display:table-header-group}img,tr{page-break-inside:avoid}h2,h3,p{orphans:3;widows:3}h2,h3{page-break-after:avoid}@page{size:a3}body{min-width:992px!important}.container{min-width:992px!important}.navbar{display:none}.badge{border:1px solid #000}.table{border-collapse:collapse!important}.table td,.table th{background-color:#fff!important}.table-bordered td,.table-bordered th{border:1px solid #dee2e6!important}.table-dark{color:inherit}.table-dark tbody+tbody,.table-dark td,.table-dark th,.table-dark thead th{border-color:#dee2e6}.table .thead-dark th{color:inherit;border-color:#dee2e6}}
190
+
191
+ /* see src/components/Edge.jsx#HOVER_SCALE_FACTOR (currently line 8) */
192
+ .display-mode .btn-toolbar {
193
+ position: absolute;
194
+ }
195
+ .genetree-vis {
196
+ /* see src/components/Edge.jsx#HOVER_SCALE_FACTOR (currently line 8) */
197
+ }
198
+ .genetree-vis .node,
199
+ .genetree-vis .edge {
200
+ cursor: pointer;
201
+ }
202
+ .genetree-vis .tree-wrapper {
203
+ /* transitions for mouse hover, etc, interactions */
204
+ /* transitions for expanding/contracting clades */
205
+ }
206
+ .genetree-vis .tree-wrapper * {
207
+ transition: all 20ms ease-in-out;
208
+ }
209
+ .genetree-vis .tree-wrapper .clade {
210
+ transition: transform 20ms ease-in-out;
211
+ }
212
+ .genetree-vis .tree-wrapper .clade .edge-rect {
213
+ transition: scaleY 20ms ease-in-out, scaleX 20ms ease-in-out, transform 20ms ease-in-out;
214
+ }
215
+ .genetree-vis .interaction-helper {
216
+ opacity: 0;
217
+ }
218
+ .genetree-vis .node circle {
219
+ stroke: #777;
220
+ fill: #fff;
221
+ }
222
+ .genetree-vis .speciation rect {
223
+ fill: #000080;
224
+ }
225
+ .genetree-vis .duplication rect {
226
+ fill: #cd0000;
227
+ }
228
+ .genetree-vis .gene_split rect {
229
+ fill: #ffff00;
230
+ -webkit-animation: pulse linear .2s;
231
+ -webkit-animation-iteration-count: 50;
232
+ animation: pulse linear .2s;
233
+ animation-iteration-count: 50;
234
+ }
235
+ @-webkit-keyframes pulse {
236
+ 0% { fill: #cd0000; }
237
+ 50% { fill: #ffff00; }
238
+ 100% { fill: #0000ff; }
239
+ }
240
+ @keyframes pulse {
241
+ 0% { fill: #cd0000; }
242
+ 50% { fill: #ffff00; }
243
+ 100% { fill: #0000ff; }
244
+ }
245
+ .genetree-vis .node:hover .internal,
246
+ .genetree-vis .edge:hover .internal,
247
+ .genetree-vis .node:hover .gene circle,
248
+ .genetree-vis .edge:hover .gene circle,
249
+ .genetree-vis .node:hover ~ .clade .node rect,
250
+ .genetree-vis .edge:hover ~ .clade .node rect,
251
+ .genetree-vis .node:hover + .node rect,
252
+ .genetree-vis .edge:hover + .node rect {
253
+ transform: scale(2);
254
+ }
255
+ .genetree-vis .node:hover ~ .clade .interaction-rect,
256
+ .genetree-vis .edge:hover ~ .clade .interaction-rect {
257
+ opacity: 1;
258
+ fill-opacity: 1;
259
+ }
260
+ .genetree-vis .node:hover ~ .clade circle,
261
+ .genetree-vis .edge:hover ~ .clade circle,
262
+ .genetree-vis .node:hover + .node circle,
263
+ .genetree-vis .edge:hover + .node circle,
264
+ .genetree-vis .node:hover .collapsed path,
265
+ .genetree-vis .edge:hover .collapsed path,
266
+ .genetree-vis .node:hover ~ .clade .collapsed path,
267
+ .genetree-vis .edge:hover ~ .clade .collapsed path,
268
+ .genetree-vis .node:hover + .node .collapsed path,
269
+ .genetree-vis .edge:hover + .node .collapsed path {
270
+ stroke-width: 2;
271
+ }
272
+ .genetree-vis .node:hover ~ .clade text,
273
+ .genetree-vis .edge:hover ~ .clade text,
274
+ .genetree-vis .node:hover text,
275
+ .genetree-vis .edge:hover text {
276
+ font-weight: bolder;
277
+ }
278
+ .genetree-vis .node .gene.ortholog_one2one circle,
279
+ .genetree-vis .node .gene.ortholog_one2many circle,
280
+ .genetree-vis .node .gene.ortholog_many2many circle {
281
+ stroke: orange;
282
+ }
283
+ .genetree-vis .node .gene.within_species_paralog circle {
284
+ stroke: green;
285
+ }
286
+ .genetree-vis .node .gene.self circle {
287
+ stroke: red;
288
+ fill: red;
289
+ }
290
+ .genetree-vis .node .gene.self text {
291
+ font-weight: bolder;
292
+ }
293
+ .genetree-vis .node .gene.representative circle {
294
+ stroke: orange;
295
+ fill: orange;
296
+ }
297
+ .genetree-vis .node text {
298
+ font-size: 11px;
299
+ fill-opacity: 1;
300
+ text-anchor: start;
301
+ }
302
+ .genetree-vis .collapsed path {
303
+ stroke-width: 1;
304
+ }
305
+ .genetree-vis .domains rect {
306
+ cursor: pointer;
307
+ stroke-opacity: 0;
308
+ }
309
+ .genetree-vis .domains rect:hover {
310
+ cursor: pointer;
311
+ stroke-opacity: 1;
312
+ }
313
+ .genetree-vis .genetree-vis .node,
314
+ .genetree-vis .genetree-vis .edge {
315
+ cursor: pointer;
316
+ }
317
+ .genetree-vis .genetree-vis .tree-wrapper {
318
+ /* transitions for mouse hover, etc, interactions */
319
+ /* transitions for expanding/contracting clades */
320
+ }
321
+ .genetree-vis .genetree-vis .tree-wrapper * {
322
+ transition: all 20ms ease-in-out;
323
+ }
324
+ .genetree-vis .genetree-vis .tree-wrapper .clade {
325
+ transition: transform 20ms ease-in-out;
326
+ }
327
+ .genetree-vis .genetree-vis .tree-wrapper .clade .edge-rect {
328
+ transition: scaleY 20ms ease-in-out, scaleX 20ms ease-in-out, transform 20ms ease-in-out;
329
+ }
330
+ .genetree-vis .genetree-vis .interaction-helper {
331
+ opacity: 0;
332
+ }
333
+ .genetree-vis .genetree-vis .node circle {
334
+ stroke: #777;
335
+ fill: #fff;
336
+ }
337
+ .genetree-vis .genetree-vis .speciation rect {
338
+ fill: #000080;
339
+ }
340
+ .genetree-vis .genetree-vis .duplication rect {
341
+ fill: #cd0000;
342
+ }
343
+ .genetree-vis .genetree-vis .node:hover .internal,
344
+ .genetree-vis .genetree-vis .edge:hover .internal,
345
+ .genetree-vis .genetree-vis .node:hover .gene circle,
346
+ .genetree-vis .genetree-vis .edge:hover .gene circle,
347
+ .genetree-vis .genetree-vis .node:hover ~ .clade .node rect,
348
+ .genetree-vis .genetree-vis .edge:hover ~ .clade .node rect,
349
+ .genetree-vis .genetree-vis .node:hover + .node rect,
350
+ .genetree-vis .genetree-vis .edge:hover + .node rect {
351
+ transform: scale(2);
352
+ }
353
+ .genetree-vis .genetree-vis .node:hover ~ .clade .interaction-rect,
354
+ .genetree-vis .genetree-vis .edge:hover ~ .clade .interaction-rect {
355
+ opacity: 1;
356
+ fill-opacity: 1;
357
+ }
358
+ .genetree-vis .genetree-vis .node:hover ~ .clade circle,
359
+ .genetree-vis .genetree-vis .edge:hover ~ .clade circle,
360
+ .genetree-vis .genetree-vis .node:hover + .node circle,
361
+ .genetree-vis .genetree-vis .edge:hover + .node circle,
362
+ .genetree-vis .genetree-vis .node:hover .collapsed path,
363
+ .genetree-vis .genetree-vis .edge:hover .collapsed path,
364
+ .genetree-vis .genetree-vis .node:hover ~ .clade .collapsed path,
365
+ .genetree-vis .genetree-vis .edge:hover ~ .clade .collapsed path,
366
+ .genetree-vis .genetree-vis .node:hover + .node .collapsed path,
367
+ .genetree-vis .genetree-vis .edge:hover + .node .collapsed path {
368
+ stroke-width: 2;
369
+ }
370
+ .genetree-vis .genetree-vis .node:hover ~ .clade text,
371
+ .genetree-vis .genetree-vis .edge:hover ~ .clade text,
372
+ .genetree-vis .genetree-vis .node:hover text,
373
+ .genetree-vis .genetree-vis .edge:hover text {
374
+ font-weight: bolder;
375
+ }
376
+ .genetree-vis .genetree-vis .node .gene.ortholog_one2one circle,
377
+ .genetree-vis .genetree-vis .node .gene.ortholog_one2many circle,
378
+ .genetree-vis .genetree-vis .node .gene.ortholog_many2many circle {
379
+ stroke: orange;
380
+ }
381
+ .genetree-vis .genetree-vis .node .gene.within_species_paralog circle {
382
+ stroke: green;
383
+ }
384
+ .genetree-vis .genetree-vis .node .gene.self circle {
385
+ stroke: red;
386
+ fill: red;
387
+ }
388
+ .genetree-vis .genetree-vis .node .gene.self text {
389
+ font-weight: bolder;
390
+ }
391
+ .genetree-vis .genetree-vis .node .gene.representative circle {
392
+ stroke: orange;
393
+ fill: orange;
394
+ }
395
+ .genetree-vis .genetree-vis .node text {
396
+ font-size: 11px;
397
+ fill-opacity: 1;
398
+ text-anchor: start;
399
+ }
400
+ .genetree-vis .genetree-vis .collapsed path {
401
+ stroke-width: 1;
402
+ }
403
+ .genetree-vis .genetree-vis .domains rect {
404
+ cursor: pointer;
405
+ stroke-opacity: 0;
406
+ }
407
+ .genetree-vis .genetree-vis .domains rect:hover {
408
+ cursor: pointer;
409
+ stroke-opacity: 1;
410
+ }
411
+ .genetree-vis .genetree-vis .tooltip-title-button {
412
+ margin-top: -4px;
413
+ }
414
+ .popover-title .tooltip-title-button {
415
+ margin-top: -4px !important;
416
+ margin-right: 4px !important;
417
+ }
418
+ .msa-slider {
419
+ position: relative;
420
+ padding-top: 10px;
421
+ padding-bottom: 0px;
422
+ margin-bottom: -10px;
423
+ }
424
+ .resize-drag {
425
+ background: rgba(0, 0, 0, 0);
426
+ border: 4px solid #7c8383;
427
+ color: red;
428
+ font-size: 1px;
429
+ font-family: sans-serif;
430
+ border-radius: 8px;
431
+ /* This makes things *much* easier */
432
+ box-sizing: border-box;
433
+ }
434
+ .resize-container {
435
+ width: 100%;
436
+ height: 100%;
437
+ }
438
+
439
+ .MSAlignments-wrapper {
440
+ overflow-x: scroll;
441
+ overflow-y: hidden;
442
+ }
443
+ .clustal {
444
+ white-space: nowrap;
445
+ font-family: monospace;
446
+ height: 18px;
447
+ font-size: 12px;
448
+ }
449
+ .clustal .A,
450
+ .clustal .I,
451
+ .clustal .L,
452
+ .clustal .M,
453
+ .clustal .F,
454
+ .clustal .W,
455
+ .clustal .V {
456
+ background-color: #80a0f0;
457
+ }
458
+ .clustal .R,
459
+ .clustal .K {
460
+ background-color: #f01505;
461
+ color: #fcff89;
462
+ }
463
+ .clustal .N,
464
+ .clustal .Q,
465
+ .clustal .S,
466
+ .clustal .T {
467
+ background-color: #00ff00;
468
+ }
469
+ .clustal .D,
470
+ .clustal .E {
471
+ background-color: #c048c0;
472
+ color: #fcff89;
473
+ }
474
+ .clustal .C {
475
+ background-color: #f08080;
476
+ }
477
+ .clustal .G {
478
+ background-color: #f09048;
479
+ }
480
+ .clustal .H {
481
+ background-color: #15a4a4;
482
+ }
483
+ .clustal .P {
484
+ background-color: #ffff00;
485
+ }
486
+ .clustal .B,
487
+ .clustal .X,
488
+ .clustal .Z {
489
+ background-color: #ffffff;
490
+ }
491
+ .clustal .gap {
492
+ color: #ccc;
493
+ }
494
+ .zappo {
495
+ white-space: nowrap;
496
+ font-family: monospace;
497
+ height: 18px;
498
+ font-size: 12px;
499
+ }
500
+ .zappo .A,
501
+ .zappo .I,
502
+ .zappo .L,
503
+ .zappo .M,
504
+ .zappo .V {
505
+ background-color: #ffafaf;
506
+ }
507
+ .zappo .R,
508
+ .zappo .H,
509
+ .zappo .K {
510
+ background-color: #6464ff;
511
+ color: #fcff89;
512
+ }
513
+ .zappo .N,
514
+ .zappo .Q,
515
+ .zappo .S,
516
+ .zappo .T {
517
+ background-color: #00ff00;
518
+ }
519
+ .zappo .D,
520
+ .zappo .E {
521
+ background-color: #ff0000;
522
+ }
523
+ .zappo .C {
524
+ background-color: #ffff00;
525
+ }
526
+ .zappo .G,
527
+ .zappo .P {
528
+ background-color: #ff00ff;
529
+ color: #fcff89;
530
+ }
531
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+ .zappo .Y {
534
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+ }
536
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+ .zappo .X,
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+ }
541
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+ color: #ccc;
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+ font-family: monospace;
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+ height: 18px;
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+ font-size: 12px;
549
+ }
550
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+ }
553
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+ background-color: #0000ff;
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+ color: #fcff89;
556
+ }
557
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558
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+ color: #fcff89;
560
+ }
561
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562
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563
+ color: #fcff89;
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+ }
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566
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+ }
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569
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+ }
571
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573
+ color: #fcff89;
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+ }
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+ }
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579
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580
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583
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586
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+ }
588
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+ background-color: #6600ff;
590
+ color: #fcff89;
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+ }
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+ }
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+ }
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+ color: #fcff89;
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+ }
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+ }
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+ color: #fcff89;
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765
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+ height: 18px;
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+ font-size: 12px;
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+ }
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+ }
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+ }
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+ }
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+ }
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+ color: #fcff89;
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+ }
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+ color: #ccc;
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+ font-family: monospace;
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+ height: 18px;
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+ font-size: 12px;
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ height: 18px;
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+ font-size: 12px;
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+ }
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+ color: #ccc;
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+ }
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+ .buried_index .A {
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+ background-color: #00a35c;
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+ }
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+ .buried_index .R {
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+ }
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+ }
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+ }
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+ }
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+ }
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+ background-color: #00f10e;
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+ }
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+ }
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+ }
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+ }
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+ .buried_index .L {
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+ }
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+ .buried_index .K {
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+ }
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+ background-color: #009768;
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+ }
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+ }
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+ .buried_index .P {
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+ }
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+ }
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+ .buried_index .T {
1003
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+ }
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+ }
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+ .buried_index .Y {
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+ background-color: #00e619;
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+ }
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+ }
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+ }
1017
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+ .buried_index .I,
1025
+ .buried_index .V {
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+ }
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1029
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+ overflow-y: hidden;
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+ }
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+ font-family: monospace;
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+ height: 18px;
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+ font-size: 12px;
1038
+ }
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+ .clustal .L,
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+ .clustal .M,
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+ .clustal .F,
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+ .clustal .W,
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+ .clustal .V {
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+ background-color: #80a0f0;
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+ }
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+ .clustal .K {
1050
+ background-color: #f01505;
1051
+ color: #fcff89;
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+ }
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+ .clustal .Q,
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+ .clustal .S,
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+ .clustal .T {
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+ }
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+ .clustal .E {
1061
+ background-color: #c048c0;
1062
+ color: #fcff89;
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+ }
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1065
+ background-color: #f08080;
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+ }
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+ .clustal .G {
1068
+ background-color: #f09048;
1069
+ }
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+ .clustal .Y .clustal .H {
1071
+ background-color: #15a4a4;
1072
+ }
1073
+ .clustal .P {
1074
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+ }
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+ .clustal .X,
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1080
+ }
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+ color: #ccc;
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+ }
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+ font-family: monospace;
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+ height: 18px;
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+ font-size: 12px;
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+ }
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+ .zappo .I,
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+ .zappo .L,
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+ .zappo .M,
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+ }
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+ .zappo .H,
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+ .zappo .K {
1100
+ background-color: #6464ff;
1101
+ color: #fcff89;
1102
+ }
1103
+ .zappo .N,
1104
+ .zappo .Q,
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+ .zappo .S,
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+ .zappo .T {
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+ }
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1110
+ .zappo .E {
1111
+ background-color: #ff0000;
1112
+ }
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+ .zappo .C {
1114
+ background-color: #ffff00;
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+ }
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+ .zappo .G,
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+ .zappo .P {
1118
+ background-color: #ff00ff;
1119
+ color: #fcff89;
1120
+ }
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1122
+ .zappo .W,
1123
+ .zappo .Y {
1124
+ background-color: #ffc800;
1125
+ }
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+ .zappo .B,
1127
+ .zappo .X,
1128
+ .zappo .Z {
1129
+ background-color: #ffffff;
1130
+ }
1131
+ .zappo .gap {
1132
+ color: #ccc;
1133
+ }
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1135
+ white-space: nowrap;
1136
+ font-family: monospace;
1137
+ height: 18px;
1138
+ font-size: 12px;
1139
+ }
1140
+ .taylor .A {
1141
+ background-color: #ccff00;
1142
+ }
1143
+ .taylor .R {
1144
+ background-color: #0000ff;
1145
+ color: #fcff89;
1146
+ }
1147
+ .taylor .N {
1148
+ background-color: #cc00ff;
1149
+ color: #fcff89;
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+ }
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1152
+ background-color: #ff0000;
1153
+ color: #fcff89;
1154
+ }
1155
+ .taylor .C {
1156
+ background-color: #ffff00;
1157
+ }
1158
+ .taylor .Q {
1159
+ background-color: #ff00cc;
1160
+ }
1161
+ .taylor .E {
1162
+ background-color: #ff0066;
1163
+ color: #fcff89;
1164
+ }
1165
+ .taylor .G {
1166
+ background-color: #ff9900;
1167
+ }
1168
+ .taylor .H {
1169
+ background-color: #0066ff;
1170
+ color: #fcff89;
1171
+ }
1172
+ .taylor .I {
1173
+ background-color: #66ff00;
1174
+ }
1175
+ .taylor .L {
1176
+ background-color: #33ff00;
1177
+ }
1178
+ .taylor .K {
1179
+ background-color: #6600ff;
1180
+ color: #fcff89;
1181
+ }
1182
+ .taylor .M {
1183
+ background-color: #00ff00;
1184
+ }
1185
+ .taylor .F {
1186
+ background-color: #00ff66;
1187
+ }
1188
+ .taylor .P {
1189
+ background-color: #ffcc00;
1190
+ }
1191
+ .taylor .S {
1192
+ background-color: #ff3300;
1193
+ color: #fcff89;
1194
+ }
1195
+ .taylor .T {
1196
+ background-color: #ff6600;
1197
+ }
1198
+ .taylor .W {
1199
+ background-color: #00ccff;
1200
+ }
1201
+ .taylor .Y {
1202
+ background-color: #00ffcc;
1203
+ }
1204
+ .taylor .V {
1205
+ background-color: #99ff00;
1206
+ }
1207
+ .taylor .B,
1208
+ .taylor .X,
1209
+ .taylor .Z {
1210
+ background-color: #ffffff;
1211
+ }
1212
+ .taylor .gap {
1213
+ color: #ccc;
1214
+ }
1215
+ .hydrophobicity {
1216
+ white-space: nowrap;
1217
+ font-family: monospace;
1218
+ height: 18px;
1219
+ font-size: 12px;
1220
+ color: #fcff89;
1221
+ }
1222
+ .hydrophobicity .A {
1223
+ background-color: #ad0052;
1224
+ }
1225
+ .hydrophobicity .R,
1226
+ .hydrophobicity .K {
1227
+ background-color: #0000ff;
1228
+ }
1229
+ .hydrophobicity .N,
1230
+ .hydrophobicity .D,
1231
+ .hydrophobicity .Q,
1232
+ .hydrophobicity .E,
1233
+ .hydrophobicity .B,
1234
+ .hydrophobicity .Z {
1235
+ background-color: #0c00f3;
1236
+ }
1237
+ .hydrophobicity .C {
1238
+ background-color: #c2003d;
1239
+ }
1240
+ .hydrophobicity .G {
1241
+ background-color: #6a0095;
1242
+ }
1243
+ .hydrophobicity .H {
1244
+ background-color: #1500ea;
1245
+ }
1246
+ .hydrophobicity .L {
1247
+ background-color: #ea0015;
1248
+ }
1249
+ .hydrophobicity .M {
1250
+ background-color: #b0004f;
1251
+ }
1252
+ .hydrophobicity .F {
1253
+ background-color: #cb0034;
1254
+ }
1255
+ .hydrophobicity .P {
1256
+ background-color: #4600b9;
1257
+ }
1258
+ .hydrophobicity .S {
1259
+ background-color: #5e00a1;
1260
+ }
1261
+ .hydrophobicity .T {
1262
+ background-color: #61009e;
1263
+ }
1264
+ .hydrophobicity .W {
1265
+ background-color: #5b00a4;
1266
+ }
1267
+ .hydrophobicity .Y {
1268
+ background-color: #4f00b0;
1269
+ }
1270
+ .hydrophobicity .V {
1271
+ background-color: #f60009;
1272
+ }
1273
+ .hydrophobicity .X {
1274
+ background-color: #680097;
1275
+ }
1276
+ .hydrophobicity .gap {
1277
+ color: #ccc;
1278
+ }
1279
+ .helix_propensity {
1280
+ white-space: nowrap;
1281
+ font-family: monospace;
1282
+ height: 18px;
1283
+ font-size: 12px;
1284
+ }
1285
+ .helix_propensity .A {
1286
+ background-color: #e718e7;
1287
+ }
1288
+ .helix_propensity .R {
1289
+ background-color: #6f906f;
1290
+ }
1291
+ .helix_propensity .N {
1292
+ background-color: #1be41b;
1293
+ }
1294
+ .helix_propensity .D {
1295
+ background-color: #778877;
1296
+ }
1297
+ .helix_propensity .C {
1298
+ background-color: #23dc23;
1299
+ }
1300
+ .helix_propensity .Q {
1301
+ background-color: #926d92;
1302
+ }
1303
+ .helix_propensity .E {
1304
+ background-color: #ff00ff;
1305
+ }
1306
+ .helix_propensity .G {
1307
+ background-color: #00ff00;
1308
+ }
1309
+ .helix_propensity .H {
1310
+ background-color: #758a75;
1311
+ }
1312
+ .helix_propensity .I {
1313
+ background-color: #8a758a;
1314
+ }
1315
+ .helix_propensity .L {
1316
+ background-color: #ae51ae;
1317
+ }
1318
+ .helix_propensity .K {
1319
+ background-color: #a05fa0;
1320
+ }
1321
+ .helix_propensity .M {
1322
+ background-color: #ef10ef;
1323
+ }
1324
+ .helix_propensity .F {
1325
+ background-color: #986798;
1326
+ }
1327
+ .helix_propensity .P {
1328
+ background-color: #00ff00;
1329
+ }
1330
+ .helix_propensity .S {
1331
+ background-color: #36c936;
1332
+ }
1333
+ .helix_propensity .T {
1334
+ background-color: #47b847;
1335
+ }
1336
+ .helix_propensity .W {
1337
+ background-color: #8a758a;
1338
+ }
1339
+ .helix_propensity .Y {
1340
+ background-color: #21de21;
1341
+ }
1342
+ .helix_propensity .V {
1343
+ background-color: #857a85;
1344
+ }
1345
+ .helix_propensity .B {
1346
+ background-color: #49b649;
1347
+ }
1348
+ .helix_propensity .X {
1349
+ background-color: #758a75;
1350
+ }
1351
+ .helix_propensity .Z {
1352
+ background-color: #c936c9;
1353
+ }
1354
+ .helix_propensity .gap {
1355
+ color: #ccc;
1356
+ }
1357
+ .strand_propensity {
1358
+ white-space: nowrap;
1359
+ font-family: monospace;
1360
+ height: 18px;
1361
+ font-size: 12px;
1362
+ }
1363
+ .strand_propensity .A {
1364
+ background-color: #5858a7;
1365
+ }
1366
+ .strand_propensity .R {
1367
+ background-color: #6b6b94;
1368
+ }
1369
+ .strand_propensity .N {
1370
+ background-color: #64649b;
1371
+ }
1372
+ .strand_propensity .D {
1373
+ background-color: #2121de;
1374
+ }
1375
+ .strand_propensity .C {
1376
+ background-color: #9d9d62;
1377
+ }
1378
+ .strand_propensity .Q {
1379
+ background-color: #8c8c73;
1380
+ }
1381
+ .strand_propensity .E {
1382
+ background-color: #0000ff;
1383
+ }
1384
+ .strand_propensity .G {
1385
+ background-color: #4949b6;
1386
+ }
1387
+ .strand_propensity .H {
1388
+ background-color: #60609f;
1389
+ }
1390
+ .strand_propensity .I {
1391
+ background-color: #ecec13;
1392
+ }
1393
+ .strand_propensity .L {
1394
+ background-color: #b2b24d;
1395
+ }
1396
+ .strand_propensity .K {
1397
+ background-color: #4747b8;
1398
+ }
1399
+ .strand_propensity .M {
1400
+ background-color: #82827d;
1401
+ }
1402
+ .strand_propensity .F {
1403
+ background-color: #c2c23d;
1404
+ }
1405
+ .strand_propensity .P {
1406
+ background-color: #2323dc;
1407
+ }
1408
+ .strand_propensity .S {
1409
+ background-color: #4949b6;
1410
+ }
1411
+ .strand_propensity .T {
1412
+ background-color: #9d9d62;
1413
+ }
1414
+ .strand_propensity .W {
1415
+ background-color: #c0c03f;
1416
+ }
1417
+ .strand_propensity .Y {
1418
+ background-color: #d3d32c;
1419
+ }
1420
+ .strand_propensity .V {
1421
+ background-color: #ffff00;
1422
+ }
1423
+ .strand_propensity .B {
1424
+ background-color: #4343bc;
1425
+ }
1426
+ .strand_propensity .X {
1427
+ background-color: #797986;
1428
+ }
1429
+ .strand_propensity .Z {
1430
+ background-color: #4747b8;
1431
+ }
1432
+ .strand_propensity .A,
1433
+ .strand_propensity .R,
1434
+ .strand_propensity .N,
1435
+ .strand_propensity .D,
1436
+ .strand_propensity .E,
1437
+ .strand_propensity .G,
1438
+ .strand_propensity .H,
1439
+ .strand_propensity .K,
1440
+ .strand_propensity .P,
1441
+ .strand_propensity .S,
1442
+ .strand_propensity .B,
1443
+ .strand_propensity .Z {
1444
+ color: #fcff89;
1445
+ }
1446
+ .strand_propensity .gap {
1447
+ color: #ccc;
1448
+ }
1449
+ .turn_propensity {
1450
+ white-space: nowrap;
1451
+ font-family: monospace;
1452
+ height: 18px;
1453
+ font-size: 12px;
1454
+ }
1455
+ .turn_propensity .gap {
1456
+ color: #ccc;
1457
+ }
1458
+ .turn_propensity .A {
1459
+ background-color: #2cd3d3;
1460
+ }
1461
+ .turn_propensity .R {
1462
+ background-color: #708f8f;
1463
+ }
1464
+ .turn_propensity .N {
1465
+ background-color: #ff0000;
1466
+ }
1467
+ .turn_propensity .D {
1468
+ background-color: #e81717;
1469
+ }
1470
+ .turn_propensity .C {
1471
+ background-color: #a85757;
1472
+ }
1473
+ .turn_propensity .Q {
1474
+ background-color: #3fc0c0;
1475
+ }
1476
+ .turn_propensity .E {
1477
+ background-color: #778888;
1478
+ }
1479
+ .turn_propensity .G {
1480
+ background-color: #ff0000;
1481
+ }
1482
+ .turn_propensity .H {
1483
+ background-color: #708f8f;
1484
+ }
1485
+ .turn_propensity .I {
1486
+ background-color: #00ffff;
1487
+ }
1488
+ .turn_propensity .L {
1489
+ background-color: #1ce3e3;
1490
+ }
1491
+ .turn_propensity .K {
1492
+ background-color: #7e8181;
1493
+ }
1494
+ .turn_propensity .M {
1495
+ background-color: #1ee1e1;
1496
+ }
1497
+ .turn_propensity .F {
1498
+ background-color: #1ee1e1;
1499
+ }
1500
+ .turn_propensity .P {
1501
+ background-color: #f60909;
1502
+ }
1503
+ .turn_propensity .S {
1504
+ background-color: #e11e1e;
1505
+ }
1506
+ .turn_propensity .T {
1507
+ background-color: #738c8c;
1508
+ }
1509
+ .turn_propensity .W {
1510
+ background-color: #738c8c;
1511
+ }
1512
+ .turn_propensity .Y {
1513
+ background-color: #9d6262;
1514
+ }
1515
+ .turn_propensity .V {
1516
+ background-color: #07f8f8;
1517
+ }
1518
+ .turn_propensity .B {
1519
+ background-color: #f30c0c;
1520
+ }
1521
+ .turn_propensity .X {
1522
+ background-color: #7c8383;
1523
+ }
1524
+ .turn_propensity .Z {
1525
+ background-color: #5ba4a4;
1526
+ }
1527
+ .turn_propensity .N,
1528
+ .turn_propensity .D,
1529
+ .turn_propensity .G,
1530
+ .turn_propensity .P,
1531
+ .turn_propensity .S,
1532
+ .turn_propensity .B {
1533
+ color: #fcff89;
1534
+ }
1535
+ .buried_index {
1536
+ white-space: nowrap;
1537
+ font-family: monospace;
1538
+ height: 18px;
1539
+ font-size: 12px;
1540
+ }
1541
+ .buried_index .gap {
1542
+ color: #ccc;
1543
+ }
1544
+ .buried_index .A {
1545
+ background-color: #00a35c;
1546
+ }
1547
+ .buried_index .R {
1548
+ background-color: #00fc03;
1549
+ }
1550
+ .buried_index .N {
1551
+ background-color: #00eb14;
1552
+ }
1553
+ .buried_index .D {
1554
+ background-color: #00eb14;
1555
+ }
1556
+ .buried_index .C {
1557
+ background-color: #0000ff;
1558
+ }
1559
+ .buried_index .Q {
1560
+ background-color: #00f10e;
1561
+ }
1562
+ .buried_index .E {
1563
+ background-color: #00f10e;
1564
+ }
1565
+ .buried_index .G {
1566
+ background-color: #009d62;
1567
+ }
1568
+ .buried_index .H {
1569
+ background-color: #00d52a;
1570
+ }
1571
+ .buried_index .I {
1572
+ background-color: #0054ab;
1573
+ }
1574
+ .buried_index .L {
1575
+ background-color: #007b84;
1576
+ }
1577
+ .buried_index .K {
1578
+ background-color: #00ff00;
1579
+ }
1580
+ .buried_index .M {
1581
+ background-color: #009768;
1582
+ }
1583
+ .buried_index .F {
1584
+ background-color: #008778;
1585
+ }
1586
+ .buried_index .P {
1587
+ background-color: #00e01f;
1588
+ }
1589
+ .buried_index .S {
1590
+ background-color: #00d52a;
1591
+ }
1592
+ .buried_index .T {
1593
+ background-color: #00db24;
1594
+ }
1595
+ .buried_index .W {
1596
+ background-color: #00a857;
1597
+ }
1598
+ .buried_index .Y {
1599
+ background-color: #00e619;
1600
+ }
1601
+ .buried_index .V {
1602
+ background-color: #005fa0;
1603
+ }
1604
+ .buried_index .B {
1605
+ background-color: #00eb14;
1606
+ }
1607
+ .buried_index .X {
1608
+ background-color: #00b649;
1609
+ }
1610
+ .buried_index .Z {
1611
+ background-color: #00f10e;
1612
+ }
1613
+ .buried_index .C,
1614
+ .buried_index .I,
1615
+ .buried_index .V {
1616
+ color: #fcff89;
1617
+ }
1618
+
1619
+ /* see src/components/Edge.jsx#HOVER_SCALE_FACTOR (currently line 8) */
1620
+ .display-mode .btn-toolbar {
1621
+ position: absolute;
1622
+ padding-left: 10px;
1623
+ }
1624
+ .tooltip-inner {
1625
+ max-width: 400px;
1626
+ }
1627
+ .genetree-vis {
1628
+ /* see src/components/Edge.jsx#HOVER_SCALE_FACTOR (currently line 8) */
1629
+ }
1630
+ .genetree-vis .node,
1631
+ .genetree-vis .edge {
1632
+ cursor: pointer;
1633
+ }
1634
+ .genetree-vis .tree-wrapper {
1635
+ /* transitions for mouse hover, etc, interactions */
1636
+ /* transitions for expanding/contracting clades */
1637
+ }
1638
+ .genetree-vis .tree-wrapper * {
1639
+ transition: all 20ms ease-in-out;
1640
+ }
1641
+ .genetree-vis .tree-wrapper .clade {
1642
+ transition: transform 20ms ease-in-out;
1643
+ }
1644
+ .genetree-vis .tree-wrapper .clade .edge-rect {
1645
+ transition: scaleY 20ms ease-in-out, scaleX 20ms ease-in-out, transform 20ms ease-in-out;
1646
+ }
1647
+ .genetree-vis .interaction-helper {
1648
+ opacity: 0;
1649
+ }
1650
+ .genetree-vis .node circle {
1651
+ stroke: #777;
1652
+ fill: #fff;
1653
+ }
1654
+ .genetree-vis .speciation rect {
1655
+ fill: #000080;
1656
+ }
1657
+ .genetree-vis .duplication rect {
1658
+ fill: #cd0000;
1659
+ }
1660
+ .genetree-vis .node:hover .internal,
1661
+ .genetree-vis .edge:hover .internal,
1662
+ .genetree-vis .node:hover .gene circle,
1663
+ .genetree-vis .edge:hover .gene circle,
1664
+ .genetree-vis .node:hover ~ .clade .node rect,
1665
+ .genetree-vis .edge:hover ~ .clade .node rect,
1666
+ .genetree-vis .node:hover + .node rect,
1667
+ .genetree-vis .edge:hover + .node rect {
1668
+ transform: scale(2);
1669
+ }
1670
+ .genetree-vis .node:hover ~ .clade .interaction-rect,
1671
+ .genetree-vis .edge:hover ~ .clade .interaction-rect {
1672
+ opacity: 1;
1673
+ fill-opacity: 1;
1674
+ }
1675
+ .genetree-vis .node:hover ~ .clade circle,
1676
+ .genetree-vis .edge:hover ~ .clade circle,
1677
+ .genetree-vis .node:hover + .node circle,
1678
+ .genetree-vis .edge:hover + .node circle,
1679
+ .genetree-vis .node:hover .collapsed path,
1680
+ .genetree-vis .edge:hover .collapsed path,
1681
+ .genetree-vis .node:hover ~ .clade .collapsed path,
1682
+ .genetree-vis .edge:hover ~ .clade .collapsed path,
1683
+ .genetree-vis .node:hover + .node .collapsed path,
1684
+ .genetree-vis .edge:hover + .node .collapsed path {
1685
+ stroke-width: 2;
1686
+ }
1687
+ .genetree-vis .node:hover ~ .clade text,
1688
+ .genetree-vis .edge:hover ~ .clade text,
1689
+ .genetree-vis .node:hover text,
1690
+ .genetree-vis .edge:hover text {
1691
+ font-weight: bolder;
1692
+ }
1693
+ .genetree-vis .node .gene.ortholog_one2one circle,
1694
+ .genetree-vis .node .gene.ortholog_one2many circle,
1695
+ .genetree-vis .node .gene.ortholog_many2many circle {
1696
+ stroke: orange;
1697
+ }
1698
+ .genetree-vis .node .gene.within_species_paralog circle {
1699
+ stroke: green;
1700
+ }
1701
+ .genetree-vis .node .gene.self circle {
1702
+ stroke: red;
1703
+ fill: red;
1704
+ }
1705
+ .genetree-vis .node .gene.self text {
1706
+ font-weight: bolder;
1707
+ }
1708
+ .genetree-vis .node .gene.representative circle {
1709
+ stroke: orange;
1710
+ fill: orange;
1711
+ }
1712
+ .genetree-vis .node text {
1713
+ font-size: 11px;
1714
+ fill-opacity: 1;
1715
+ text-anchor: start;
1716
+ }
1717
+ .genetree-vis .collapsed path {
1718
+ stroke-width: 1;
1719
+ }
1720
+ .genetree-vis .domains rect {
1721
+ cursor: pointer;
1722
+ stroke-opacity: 0;
1723
+ }
1724
+ .genetree-vis .domains rect:hover {
1725
+ cursor: pointer;
1726
+ stroke-opacity: 1;
1727
+ }
1728
+ .popover-title .tooltip-title-button {
1729
+ margin-top: -4px !important;
1730
+ margin-right: 4px !important;
1731
+ }
1732
+ .msa-slider {
1733
+ position: relative;
1734
+ padding-top: 10px;
1735
+ padding-bottom: 0px;
1736
+ margin-bottom: -10px;
1737
+ }
1738
+ .resize-drag {
1739
+ background: rgba(0, 0, 0, 0);
1740
+ border: 4px solid #7c8383;
1741
+ color: red;
1742
+ font-size: 1px;
1743
+ font-family: sans-serif;
1744
+ border-radius: 8px;
1745
+ /* This makes things *much* easier */
1746
+ box-sizing: border-box;
1747
+ }
1748
+ .resize-container {
1749
+ width: 100%;
1750
+ height: 100%;
1751
+ }
1752
+
1753
+ /*
1754
+
1755
+ <classNamePrefix>-root
1756
+
1757
+ The outer container
1758
+
1759
+ */
1760
+ .tree-view-root {
1761
+ }
1762
+
1763
+ /*
1764
+
1765
+ <classNamePrefix>-root
1766
+
1767
+ The outer container for a single node
1768
+
1769
+ */
1770
+ .tree-view-node {
1771
+ margin-left: 10px;
1772
+ }
1773
+
1774
+
1775
+ /*
1776
+
1777
+ <classNamePrefix>-node-collapse-toggle.collapse-spacer
1778
+
1779
+ Used to provide spacing when a parent node has no children
1780
+
1781
+ */
1782
+ .tree-view-node-collapse-toggle.collapse-spacer {
1783
+ width: 14px;
1784
+ display: inline-block;
1785
+ }
1786
+
1787
+ /*
1788
+ <classNamePrefix>-node-collapse-toggle.<expandIconClass>
1789
+
1790
+ The class to use for the icon that expands a collapsed parent node
1791
+
1792
+ */
1793
+
1794
+
1795
+ /*
1796
+
1797
+ <classNamePrefix>-node-collapse-toggle.<collapseIconClass>
1798
+
1799
+ The class to use for the icon that collapses an expanded parent node
1800
+
1801
+ */
1802
+
1803
+ .tree-view-node-collapse-toggle {
1804
+ margin-right: 3px;
1805
+ width: 14px;
1806
+ }
1807
+
1808
+ /*
1809
+
1810
+ <classNamePrefix>-node-label
1811
+
1812
+ */
1813
+ .tree-view-node-label {
1814
+ font-size: smaller;
1815
+ margin-left: 3px;
1816
+ padding: 1px;
1817
+ border: 1px solid #fff;
1818
+ }
1819
+
1820
+ /*
1821
+
1822
+ <classNamePrefix>-node-label.selected
1823
+
1824
+ */
1825
+ .tree-view-node-label.selected {
1826
+ border: 1px solid #003f81;
1827
+ border-radius: 3px;
1828
+ background-color: #808080;
1829
+ }
1830
+
1831
+ /*
1832
+
1833
+ <classNamePrefix>-node-checkbox
1834
+
1835
+ The class for a node checkbox
1836
+
1837
+ */
1838
+
1839
+ .tree-view-node-checkbox {}
1840
+
1841
+ /*
1842
+
1843
+ <classNamePrefix>-node-children
1844
+
1845
+ The class for the element that wraps a nodes children (if any exist)
1846
+
1847
+ */
1848
+
1849
+ .tree-view-node-children {}
1850
+
1851
+
1852
+ .taxogenomic-vis .gramene-search-vis {
1853
+ -webkit-user-select: none;
1854
+ cursor: pointer;
1855
+ }
1856
+ .taxogenomic-vis .gramene-search-vis canvas {
1857
+ position: absolute;
1858
+ }
1859
+ .taxogenomic-vis .gramene-search-vis > * {
1860
+ display: inline;
1861
+ }
1862
+ .taxogenomic-vis .gramene-search-vis text {
1863
+ font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
1864
+ font-size: 12px;
1865
+ fill: gray;
1866
+ /* since font weight transition is not smooth, emulate
1867
+ bold font with text stroke, and transition opacity. */
1868
+ stroke: #557B74;
1869
+ stroke-opacity: 0;
1870
+ stroke-width: 0.5px;
1871
+ user-select: none;
1872
+ }
1873
+ .taxogenomic-vis .gramene-search-vis text::selection {
1874
+ background: none;
1875
+ }
1876
+ .taxogenomic-vis .gramene-search-vis .taxonomy * {
1877
+ transition: fill 200ms ease-in-out, stroke-opacity 200ms ease-in-out;
1878
+ /*,
1879
+ transform 200ms ease-in-out;*/
1880
+ }
1881
+ .taxogenomic-vis .gramene-search-vis .clade .results-count {
1882
+ font-size: 10px;
1883
+ }
1884
+ .taxogenomic-vis .gramene-search-vis .clade .node circle {
1885
+ stroke: #557B74;
1886
+ stroke-width: 1px;
1887
+ fill: #f6f6f6;
1888
+ }
1889
+ .taxogenomic-vis .gramene-search-vis .clade .edge rect {
1890
+ fill: #cccccc;
1891
+ }
1892
+ .taxogenomic-vis .gramene-search-vis .clade .clade.highlight > .node > circle,
1893
+ .taxogenomic-vis .gramene-search-vis .clade .clade.highlight > .edge > rect {
1894
+ fill: #f0b866;
1895
+ }
1896
+ .taxogenomic-vis .gramene-search-vis .clade .clade.highlight > .node-label text {
1897
+ fill: #557B74;
1898
+ stroke-opacity: 1;
1899
+ }
1900
+ .taxogenomic-vis .gramene-search-vis .clade .node:hover > circle,
1901
+ .taxogenomic-vis .gramene-search-vis .clade .edge:hover > circle,
1902
+ .taxogenomic-vis .gramene-search-vis .clade .node:hover > rect,
1903
+ .taxogenomic-vis .gramene-search-vis .clade .edge:hover > rect,
1904
+ .taxogenomic-vis .gramene-search-vis .clade .node:hover ~ .node > circle,
1905
+ .taxogenomic-vis .gramene-search-vis .clade .edge:hover ~ .node > circle,
1906
+ .taxogenomic-vis .gramene-search-vis .clade .node:hover ~ .clade .edge > rect,
1907
+ .taxogenomic-vis .gramene-search-vis .clade .edge:hover ~ .clade .edge > rect,
1908
+ .taxogenomic-vis .gramene-search-vis .clade .node:hover ~ .clade .node > circle,
1909
+ .taxogenomic-vis .gramene-search-vis .clade .edge:hover ~ .clade .node > circle {
1910
+ fill: #f0b866;
1911
+ }
1912
+ .taxogenomic-vis .gramene-search-vis .clade .node:hover ~ .node-label text,
1913
+ .taxogenomic-vis .gramene-search-vis .clade .edge:hover ~ .node-label text,
1914
+ .taxogenomic-vis .gramene-search-vis .clade .node:hover ~ .clade text,
1915
+ .taxogenomic-vis .gramene-search-vis .clade .edge:hover ~ .clade text {
1916
+ fill: #557B74;
1917
+ stroke-opacity: 1;
1918
+ }
1919
+ .taxogenomic-vis .gramene-search-vis .clade .node-label:hover text {
1920
+ fill: #557B74;
1921
+ stroke-opacity: 1;
1922
+ }
1923
+ .taxogenomic-vis .gramene-search-vis .clade .bin,
1924
+ .taxogenomic-vis .gramene-search-vis .clade .full-region {
1925
+ transition: none;
1926
+ stroke: #557B74;
1927
+ stroke-width: 0;
1928
+ shape-rendering: crispEdges;
1929
+ }
1930
+ .taxogenomic-vis .gramene-search-vis .clade .bin.selected {
1931
+ fill: #ea8e75;
1932
+ }
1933
+ .taxogenomic-vis .gramene-search-vis .clade .bin:hover {
1934
+ fill: #557B74;
1935
+ }
1936
+ .taxogenomic-vis .gramene-search-vis .clade .full-region.selected {
1937
+ stroke-width: 1px;
1938
+ stroke: #ea8e75;
1939
+ }
1940
+ .taxogenomic-vis .gramene-search-vis .clade .full-region:hover {
1941
+ stroke-width: 1px;
1942
+ stroke: #557B74;
1943
+ }
1944
+ .taxogenomic-vis .gramene-search-vis .clade .species-background {
1945
+ fill: none;
1946
+ }
1947
+ .taxogenomic-vis .gramene-search-vis .clade .node:hover ~ .species-background,
1948
+ .taxogenomic-vis .gramene-search-vis .clade .edge:hover ~ .species-background,
1949
+ .taxogenomic-vis .gramene-search-vis .clade .node:hover ~ .clade .species-background,
1950
+ .taxogenomic-vis .gramene-search-vis .clade .edge:hover ~ .clade .species-background,
1951
+ .taxogenomic-vis .gramene-search-vis .clade .clade.highlight > .species-background {
1952
+ fill: #f9e3c3;
1953
+ }
1954
+
1955
+ .gramene-sidebar {
1956
+ position: fixed;
1957
+ background-color: dimgray;
1958
+ padding-left: 8px;
1959
+ padding-right: 8px;
1960
+ padding-bottom: 8px;
1961
+ max-width: 16.67%;
1962
+ }
1963
+ .gramene-filter-container {
1964
+ background-color: #cfb5e6;
1965
+ padding-left: 4px;
1966
+ }
1967
+ .gramene-filter {
1968
+ padding-left: 4px;
1969
+ padding-right: 4px;
1970
+ padding-bottom: 4px;
1971
+ background-color: white;
1972
+ font-size: small;
1973
+ }
1974
+ .gramene-filter span:hover {
1975
+ font-weight:bolder;
1976
+ }
1977
+ .gramene-filter-AND {
1978
+ background-color: #ffcd82;
1979
+ }
1980
+ .gramene-filter-OR {
1981
+ background-color: #c5eeb9;
1982
+ }
1983
+ .gramene-filter-NOT {
1984
+ border-left-color: #ff5354;
1985
+ border-left-style: inset;
1986
+ border-left-width: 4px;
1987
+ padding-left: 4px;
1988
+ }
1989
+ .gramene-filter-operation {
1990
+ text-align: center;
1991
+ font-style: italic;
1992
+ }
1993
+ .gramene-filter-marked {
1994
+ font-weight: bolder;
1995
+ /*background-color: #feff96;*/
1996
+ }
1997
+ .gramene-filter-menu ul {
1998
+ border-top-style: solid;
1999
+ border-top-width: 2px;
2000
+ padding-left: 0;
2001
+ }
2002
+ .gramene-filter-menu li {
2003
+ display: block;
2004
+ cursor: pointer;
2005
+ padding-left: 15px;
2006
+ }
2007
+ .gramene-filter-menu li:hover {
2008
+ background-color: #feff96;
2009
+ }
2010
+
2011
+ .gramene-view-container {
2012
+ background-color: lightblue;
2013
+ padding-left: 10px;
2014
+ }
2015
+ .gramene-view {
2016
+ padding-left: 5px;
2017
+ margin: 4px;
2018
+ background-color: white;
2019
+ }
2020
+ .gramene-view li {
2021
+ display: block;
2022
+ cursor: pointer;
2023
+ padding-left: 5px;
2024
+ border-left-style: inset;
2025
+ border-left-width: 4px;
2026
+ margin-bottom: 2px;
2027
+ }
2028
+
2029
+ .gramene-view-on {
2030
+ border-left-color: #40a0ff;
2031
+ }
2032
+ .gramene-view-off {
2033
+ border-left-color: #ff6d68;
2034
+ }
2035
+ .gramene-view-disabled {
2036
+ color: darkgray;
2037
+ border-left-color: #efefef;
2038
+ }
2039
+ #gramene-suggestion button {
2040
+ border-radius: .6rem;
2041
+ line-height: 1;
2042
+ }
2043
+ #gramene-suggestion button:focus {
2044
+ color: #fff;
2045
+ background-color: #6c757d;
2046
+ border-color: #6c757d;
2047
+ }
2048
+ .mdview img {
2049
+ max-width: 100%;
2050
+ height: auto;
2051
+ }
2052
+
2053
+ /*# sourceMappingURL=grapevine.cd0ac19f.css.map */