emdash-emit 0.1.11 → 0.1.13

package/CHANGELOG.md

@@ -7,6 +7,77 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ---
 
+## [0.1.13] - 2026-11-09
+
+### Added
+- **Pre-PUT Taxonomy Divergence Audit (R1 / EMIT-001)**:
+  - Audits remote taxonomy assignments (`GET /_emdash/api/content/:collection/:id/terms/{category,tag}`) prior to PUT when article defines taxonomies.
+  - Detects out-of-band remote taxonomy modifications independent of entry `_rev` and routes directly into 3-way merge / guards.
+  - Added schema v2 migration (`CURRENT_CACHE_SCHEMA_VERSION = 2`), adding `remote_taxonomy_hash` and `taxonomy_apply_pending` with `.bak-0.1.12-<timestamp>` WAL-checkpointed backup (3-generation retention).
+  - Added `--no-taxonomy-audit` and `--allow-unapplied-taxonomies` flags to CLI `emit push` and MCP `sync_push`.
+- **Partial Failure Handling for Taxonomy Sync (R2 / EMIT-002)**:
+  - Added Guard G17 (`TAXONOMY_APPLY_PENDING`): if body PUT succeeds but term POST fails, records `taxonomy_apply_pending = 1` and blocks bare re-push until resolved.
+  - Reverts baseline taxonomy terms and hash to prior values on partial failure without rolling back body changes.
+  - Automatically syncs taxonomies in single-article pull (`emit pull <id>` / MCP `sync_pull`) unless `postsOnly: true` is explicitly specified.
+- **Hierarchical Taxonomy Term Flattening (R5 / EMIT-008)**:
+  - Recursively traverses and flattens nested `children` terms in `pullTaxonomies` (`fetchTerms`), preserving `parentId` in `categories/<id>-<label>.yaml` and `tags/<id>-<label>.yaml` with visited-set cycle guard and depth limit (32).
+  - Unifies local taxonomy candidate indexing and slug-to-term ID resolution across hierarchical taxonomy trees.
+- **Quarantine, Doctor & MCP Enhancements (R3, R6, R8)**:
+  - Conflict copy deduplication: reuses canonical `.conflict.md` if unedited without incrementing numeric suffix.
+  - Added `.local-dropped` type recognition and `🛡️ [FORCE DROPPED]` reporting in `emit conflicts list`.
+  - Added `warnings` in MCP `sync_status` when unreviewed quarantine copies exist in `<collection>/conflicts/`.
+  - Added `prune` action with `olderThan`, `dryRun`, `allowOrphanRescues` to MCP `sync_conflicts`.
+  - Added `--strict-media` option to CLI `emit doctor` and MCP `sync_doctor`.
+  - Added `profile` and `workspaceRoot` to MCP heartbeat recording state.
+
+### Fixed
+- **Cache Schema Mismatch Presentation (R4 / EMIT-006)**:
+  - Wrapped `CacheDatabase` initialization in CLI context resolver so `[CACHE_SCHEMA_MISMATCH]` exits with exit code 1 and a clean message instead of printing raw Node stack traces.
+- **Deterministic Filename Resolution (R7 / EMIT-005)**:
+  - Symmetrically resolved date prefixes and titles between batch fast-path and full pull.
+- **3-State Taxonomy Evaluation**:
+  - Treated missing or malformed term lists as `unknown` (`null`) instead of `none` (`[]`), avoiding false divergence detection on unsupported or mock endpoints.
+
+### Notes & Migration
+- **Schema v2 Self-Healing for Existing Workspaces**:
+  - Articles synchronized prior to v0.1.12 will have `remote_taxonomy_hash` set to `NULL` in the SQLite cache upon upgrading to schema v2. The remote taxonomy hash is automatically calculated and saved on the article's first subsequent `emit push` or `emit pull`, after which out-of-band taxonomy divergence auditing is fully active.
+
+---
+
+## [0.1.12] - 2026-11-09
+
+### Added
+- **Phase 0: SQLite Schema Migration & WAL Safety**:
+  - Implemented schema versioning via `PRAGMA user_version` (`CURRENT_CACHE_SCHEMA_VERSION = 1`).
+  - Added safe migration with `PRAGMA wal_checkpoint(TRUNCATE)` before backup and 3-generation backup retention (`.bak-0.1.11-<timestamp>`).
+  - Added new columns: `conflict_pending`, `delete_pending`, `conflict_copy_hash`, `conflict_copy_path`, and `conflict_at`.
+  - Added future schema mismatch guard (`[CACHE_SCHEMA_MISMATCH]`) to prevent database corruption when running older binaries.
+- **Phase 3 & 4: Strict Set-Algebraic Taxonomy 3-Way Merge & Push Guards**:
+  - Replaced ambiguous dispute logic with strict set-algebraic 3-way taxonomy merge: mutual deletions and clean single-side edits are non-conflicting.
+  - Automatic clean union of remote taxonomy additions with explicit logging: `🏷️ Merged remote taxonomy change(s)`.
+  - Added `DESTRUCTIVE_TAXONOMY_WIPE` guard requiring `--allow-wipe-taxonomies` (or MCP `allowWipeTaxonomies: true`) when wiping existing remote terms with an empty array.
+  - Added `TAXONOMY_UNION_REJECTED` error handling when server rejects a merged union (e.g. single category constraint), guiding user to `--resolve-taxonomy=local|remote`.
+  - Added `TAXONOMY_CONFLICT_PENDING` push block: re-pushing an unresolved taxonomy conflict requires `--resolve-taxonomy` or `--force`.
+  - Added `DELETE_PENDING_ARTICLE` push block: pushing delete-pending articles requires `--revive` (or `--force`).
+- **Phase 6: Conflict Pruning & MCP Heartbeat**:
+  - Added `emit conflicts prune` (`--older-than <duration>`, `--dry-run`, `--allow-orphan-rescues`) with unpushed edit safety guards.
+  - Added MCP Heartbeat state recording (`~/.config/emit/mcp_state.json` mode 0600) and stale process detection in `emit doctor` / `sync_doctor` (`ESRCH` cleanup, `EPERM` tolerance, and `mtime` outdating check).
+  - Maintained complete backward compatibility in `emit status` by omitting the `Flags:` line when all flags are 0.
+
+### Fixed
+- **Phase 1: Revision Normalization & Heal Symmetry**:
+  - Fixed false-positive unpushed edits quarantine caused by Base64 token vs numeric revision formats (`normalizeRev()`).
+  - Kept raw opaque tokens strictly unchanged for server `_rev` PUT transmission and storage.
+- **Phase 2: Remote Delete Verification**:
+  - Added exponential backoff GET verification with `Cache-Control: no-cache` and `_cb=<timestamp>` to prevent false-success deletion races.
+  - Treated HTTP 404 and HTTP 410 (Gone) as confirmed deletion.
+  - Protected unpushed local edits on remote delete as `orphan: true` instead of discarding local files.
+- **Phase 5: Doctor Informational Media Classification**:
+  - Classified code-fence, inline-code, and placeholder media references as `informationalRefs` (Info level).
+  - Only unresolved normal body image references trigger warnings, allowing clean workspaces with sample code to report Overall PASS (exit 0).
+
+---
+
 ## [0.1.11] - 2026-11-09
 
 ### Fixed

package/README.md

@@ -722,6 +722,12 @@ emit push [file] [options]
 * `[file]`: Relative or absolute path to the Markdown file.
 * `--allow-publish`: Required when promoting an article to `status: published`.
 * `--all`: Pushes all modified files in the workspace.
+* `--no-taxonomy-audit`: Skips pre-PUT remote taxonomy divergence audit.
+* `--allow-unapplied-taxonomies`: Pushes article body even if taxonomy term assignment fails (bypasses Guard G17).
+* `--allow-wipe-taxonomies`: Confirms intentional deletion of all assigned categories or tags.
+* `--resolve-taxonomy <strategy>`: Resolves taxonomy conflict explicitly (`union`, `local`, or `remote`).
+* `--revive`: Pushes an article that was previously marked delete_pending.
+* `-f, --force`: Bypasses non-critical safety guardrails.
 * `-p, --profile <name>`: Explicitly target a specific connection profile.
 
 **Example:**

package/dist/cli/commands/conflicts.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"conflicts.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/conflicts.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAUzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,wBAAgB,wBAAwB,CACtC,OAAO,EAAE,OAAO,EAChB,cAAc,EAAE,kBAAkB,GACjC,IAAI,CA4MN"}

package/dist/cli/commands/conflicts.js

@@ -20,7 +20,7 @@
  * SOFTWARE.
  */
 import { ApiError } from '../../client/error.js';
-import { listConflicts, diffConflict, resolveConflict, CanonicalHasUnpushedEditsError, QuarantinedPathRequiredError, } from '../../sync/conflicts.js';
+import { listConflicts, diffConflict, resolveConflict, pruneConflicts, CanonicalHasUnpushedEditsError, QuarantinedPathRequiredError, } from '../../sync/conflicts.js';
 export function registerConflictsCommand(program, resolveContext) {
     const reportActionFailure = (error) => {
         if (error instanceof CanonicalHasUnpushedEditsError) {
@@ -64,9 +64,11 @@ export function registerConflictsCommand(program, resolveContext) {
             for (const item of items) {
                 const typeLabel = item.type === 'conflict'
                     ? '⚠️  [SYNC CONFLICT]'
-                    : item.type === 'deleted'
-                        ? '🗑️  [DELETED RESCUE]'
-                        : '❓ [UNKNOWN]';
+                    : item.type === 'dropped'
+                        ? '🛡️  [FORCE DROPPED]'
+                        : item.type === 'deleted'
+                            ? '🗑️  [DELETED RESCUE]'
+                            : '❓ [UNKNOWN]';
                 const titleStr = item.title ? ` - "${item.title}"` : '';
                 const canonicalStr = item.canonicalPath
                     ? ` (canonical: ${item.canonicalPath})`
@@ -149,5 +151,49 @@ export function registerConflictsCommand(program, resolveContext) {
             reportActionFailure(err);
         }
     });
+    // emit conflicts prune
+    conflicts
+        .command('prune')
+        .description('Clean up old quarantined conflict copies and deletion backups in posts/conflicts/')
+        .option('--older-than <duration>', 'Prune copies older than specified duration (e.g. 7d, 24h)')
+        .option('--dry-run', 'Preview files that would be pruned without deleting')
+        .option('-y, --yes', 'Confirm pruning without interactive prompt')
+        .option('--allow-orphan-rescues', 'Allow pruning orphan rescue backups that have no canonical article (e.g. .deleted.md)')
+        .option('-c, --collection <collection>', 'Target collection (defaults to "posts")')
+        .option('-p, --profile <name>', 'Explicitly use a specific connection profile')
+        .action(async (options) => {
+        try {
+            const ctx = resolveContext(options.profile, { optionalAuth: true });
+            const collection = options.collection || ctx.config.defaultCollection || 'posts';
+            const result = pruneConflicts({
+                workspaceRoot: ctx.root,
+                cache: ctx.cache,
+                collection,
+                olderThan: options.olderThan,
+                dryRun: options.dryRun,
+                allowOrphanRescues: options.allowOrphanRescues,
+            });
+            const prefix = result.dryRun ? '🔍 [DRY-RUN] Would prune' : '🗑️  Pruned';
+            if (result.pruned.length === 0 && result.skipped.length === 0) {
+                console.log(`✅ No conflict copies found to prune in ${collection}/conflicts/.`);
+                return;
+            }
+            if (result.pruned.length > 0) {
+                console.log(`${prefix} ${result.pruned.length} quarantined file(s):`);
+                for (const f of result.pruned) {
+                    console.log(`   - ${f}`);
+                }
+            }
+            if (result.skipped.length > 0) {
+                console.log(`\n🛡️  Skipped ${result.skipped.length} quarantined file(s) for safety:`);
+                for (const s of result.skipped) {
+                    console.log(`   - ${s.filePath}: ${s.reason}`);
+                }
+            }
+        }
+        catch (err) {
+            reportActionFailure(err);
+        }
+    });
 }
 //# sourceMappingURL=conflicts.js.map

package/dist/cli/commands/conflicts.js.map

@@ -1 +1 @@
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package/dist/cli/commands/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAGzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,kBAAkB,GAAG,IAAI,CAgEhG"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAGzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,kBAAkB,GAAG,IAAI,CAqEhG"}

package/dist/cli/commands/doctor.js

@@ -39,6 +39,7 @@ export function registerDoctorCommand(program, resolveContext) {
         .description('Run comprehensive diagnostics on workspace configuration, cache, and content integrity')
         .option('-c, --collection <collection>', 'Target collection (defaults to "posts")')
         .option('-p, --profile <name>', 'Explicitly use a specific connection profile')
+        .option('--strict-media', 'Enforce strict media verification (fail on unpromoted or unverified references)')
         .action(async (options) => {
         try {
             const ctx = resolveContext(options.profile, { optionalAuth: true });
@@ -50,6 +51,7 @@ export function registerDoctorCommand(program, resolveContext) {
                 profileName: ctx.auth?.profileName,
                 profileOrigin: ctx.auth?.origin,
                 collection,
+                strictMedia: Boolean(options.strictMedia),
             });
             console.log(`🩺 Emit Workspace Doctor`);
             console.log(`   Workspace: ${report.workspace}`);

package/dist/cli/commands/doctor.js.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor.js","sourceRoot":"","sources":["../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;AAGH,OAAO,EAAE,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AACjD,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAG1D,MAAM,UAAU,qBAAqB,CAAC,OAAgB,EAAE,cAAkC;IACxF,MAAM,mBAAmB,GAAG,CAAC,KAAc,EAAS,EAAE;QACpD,IAAI,KAAK,YAAY,QAAQ,EAAE,CAAC;YAC9B,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,kBAAkB,EAAE,CAAC,CAAC;QAC5C,CAAC;aAAM,IAAI,KAAK,YAAY,KAAK,EAAE,CAAC;YAClC,OAAO,CAAC,KAAK,CAAC,YAAY,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC;QAC7C,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,KAAK,CAAC,YAAY,MAAM,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAC7C,CAAC;QACD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC,CAAC;IAEF,OAAO;SACJ,OAAO,CAAC,QAAQ,CAAC;SACjB,WAAW,CACV,wFAAwF,CACzF;SACA,MAAM,CAAC,+BAA+B,EAAE,yCAAyC,CAAC;SAClF,MAAM,CAAC,sBAAsB,EAAE,8CAA8C,CAAC;SAC9E,MAAM,CACL,gBAAgB,EAChB,iFAAiF,CAClF;SACA,MAAM,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE;QACxB,IAAI,CAAC;YACH,MAAM,GAAG,GAAG,cAAc,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,CAAC,CAAC;YACpE,MAAM,UAAU,GAAG,OAAO,CAAC,UAAU,IAAI,GAAG,CAAC,MAAM,CAAC,iBAAiB,IAAI,OAAO,CAAC;YAEjF,MAAM,MAAM,GAAG,MAAM,kBAAkB,CAAC;gBACtC,aAAa,EAAE,GAAG,CAAC,IAAI;gBACvB,KAAK,EAAE,GAAG,CAAC,KAAK;gBAChB,MAAM,EAAE,GAAG,CAAC,MAAM;gBAClB,WAAW,EAAE,GAAG,CAAC,IAAI,EAAE,WAAW;gBAClC,aAAa,EAAE,GAAG,CAAC,IAAI,EAAE,MAAM;gBAC/B,UAAU;gBACV,WAAW,EAAE,OAAO,CAAC,OAAO,CAAC,WAAW,CAAC;aAC1C,CAAC,CAAC;YAEH,OAAO,CAAC,GAAG,CAAC,0BAA0B,CAAC,CAAC;YACxC,OAAO,CAAC,GAAG,CAAC,iBAAiB,MAAM,CAAC,SAAS,EAAE,CAAC,CAAC;YACjD,OAAO,CAAC,GAAG,CACT,kBAAkB,MAAM,CAAC,WAAW,GAAG,MAAM,CAAC,kBAAkB,CAAC,CAAC,CAAC,mBAAmB,MAAM,CAAC,kBAAkB,GAAG,CAAC,CAAC,CAAC,EAAE,IAAI,CAC5H,CAAC;YAEF,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,MAAM,EAAE,CAAC;gBAClC,MAAM,KAAK,GACT,KAAK,CAAC,MAAM,KAAK,IAAI;oBACnB,CAAC,CAAC,UAAU;oBACZ,CAAC,CAAC,KAAK,CAAC,MAAM,KAAK,SAAS;wBAC1B,CAAC,CAAC,YAAY;wBACd,CAAC,CAAC,UAAU,CAAC;gBACnB,OAAO,CAAC,GAAG,CAAC,KAAK,KAAK,IAAI,KAAK,CAAC,IAAI,KAAK,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC;YAC5D,CAAC;YAED,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;YAChB,IAAI,MAAM,CAAC,aAAa,KAAK,SAAS,EAAE,CAAC;gBACvC,OAAO,CAAC,GAAG,CAAC,8DAA8D,CAAC,CAAC;YAC9E,CAAC;iBAAM,IAAI,MAAM,CAAC,aAAa,KAAK,UAAU,EAAE,CAAC;gBAC/C,OAAO,CAAC,GAAG,CACT,iFAAiF,CAClF,CAAC;YACJ,CAAC;iBAAM,CAAC;gBACN,OAAO,CAAC,GAAG,CAAC,iEAAiE,CAAC,CAAC;gBAC/E,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAClB,CAAC;QACH,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,mBAAmB,CAAC,GAAG,CAAC,CAAC;QAC3B,CAAC;IACH,CAAC,CAAC,CAAC;AACP,CAAC"}

package/dist/cli/commands/pull.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pull.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/pull.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAUzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,MAAM,GAAG,SAAS,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,CAEvF;AAED,wBAAgB,yBAAyB,CACvC,MAAM,EAAE,MAAM,GAAG,SAAS,EAC1B,KAAK,EAAE,KAAK,CAAC;IAAE,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,GACnD,MAAM,CAKR;AAED,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,kBAAkB,GAAG,IAAI,CA+T/F"}
+{"version":3,"file":"pull.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/pull.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAUzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,MAAM,GAAG,SAAS,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,CAEvF;AAED,wBAAgB,yBAAyB,CACvC,MAAM,EAAE,MAAM,GAAG,SAAS,EAC1B,KAAK,EAAE,KAAK,CAAC;IAAE,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,GACnD,MAAM,CAKR;AAED,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,kBAAkB,GAAG,IAAI,CA0U/F"}

package/dist/cli/commands/pull.js

@@ -110,10 +110,10 @@ export function registerPullCommands(program, resolveContext) {
                             console.log(`  [${current}/${total}] 🗑️  Pruned ${item.slug} -> ${item.filePath}`);
                         }
                         else if (item.healed) {
-                            console.log(`  [${current}/${total}] 🛠️  Repaired frontmatter syntax for ${item.slug} (${item.filePath}, local body preserved)`);
+                            console.log(`  [${current}/${total}] 🛠️  Repaired frontmatter syntax for ${item.slug} (${item.filePath}, local body preserved). Push the file to apply changes to the server.`);
                         }
                         else if (item.localEditsPreserved) {
-                            console.log(`\n  [${current}/${total}] 🛡️  Kept local edits for ${item.slug} (${item.filePath})`);
+                            console.log(`\n  [${current}/${total}] 🛡️  Kept local edits for ${item.slug} (${item.filePath}; remote changes NOT applied)`);
                         }
                         else if (!item.skipped) {
                             console.log(`  [${current}/${total}] ✅ Pulled ${item.slug} -> ${item.filePath}`);
@@ -156,7 +156,15 @@ export function registerPullCommands(program, resolveContext) {
                 }
             }
             else {
-                // Single article mode: articles only (no taxonomy/media overhead)
+                // Single article mode: pull article and synchronize taxonomies (unless --posts-only)
+                if (!options.postsOnly) {
+                    await pullTaxonomies({
+                        workspaceRoot: ctx.root,
+                        origin: ctx.origin,
+                        token: ctx.auth.token,
+                        refreshToken: ctx.auth.refreshToken,
+                    }).catch(() => null);
+                }
                 const res = await pullArticle(collection, id, {
                     workspaceRoot: ctx.root,
                     cache: ctx.cache,
@@ -170,10 +178,11 @@ export function registerPullCommands(program, resolveContext) {
                 }
                 else if (res.healed) {
                     console.log(`🛠️ Repaired frontmatter syntax for ${res.slug} (${res.filePath}; unpushed local body was strictly preserved).`);
+                    console.log(`   Push the file to apply changes to the server: "emit push ${res.filePath}"`);
                 }
                 else if (res.localEditsPreserved) {
-                    console.log(`🛡️ Kept your local edits for ${res.slug} (${res.filePath}); remote changes were NOT applied.`);
-                    console.log(`   Push them with "emit push ${res.filePath}", or re-run with --force to accept the remote version.`);
+                    console.log(`🛡️ Kept 1 local edit(s); 1 remote change(s) NOT applied (${res.filePath}).`);
+                    console.log(`   Push them with "emit push ${res.filePath}", or re-run with --force to accept remote.`);
                 }
                 else if (res.skipped) {
                     console.log(`ℹ️ Article ${res.slug} is already up-to-date (${res.filePath})`);

package/dist/cli/commands/pull.js.map

@@ -1 +1 @@
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package/dist/cli/commands/push.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"push.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/push.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAKzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,kBAAkB,GAAG,IAAI,CAiJ9F"}
+{"version":3,"file":"push.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/push.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAKzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,kBAAkB,GAAG,IAAI,CAqM9F"}

package/dist/cli/commands/push.js

@@ -29,6 +29,12 @@ export function registerPushCommand(program, resolveContext) {
         .description('Push local markdown article(s) to remote EmDash (auto-uploads media/drafts/* images)')
         .option('--allow-publish', 'Confirm publishing live to remote')
         .option('--all', 'Push all modified files in workspace')
+        .option('--resolve-taxonomy <strategy>', 'Resolve taxonomy conflict during 3-way merge: "union", "local", or "remote"')
+        .option('--allow-wipe-taxonomies', 'Explicitly confirm wiping all remote taxonomy assignments')
+        .option('--allow-unapplied-taxonomies', 'Allow push even if previous taxonomy sync failed (bypasses Guard G17)')
+        .option('--no-taxonomy-audit', 'Skip remote taxonomy pre-audit check before pushing')
+        .option('--revive', 'Intentionally revive and push a delete-pending article')
+        .option('-f, --force', 'Force push and overwrite conflicting taxonomy states')
         .option('-p, --profile <name>', 'Explicitly use a specific connection profile')
         .action(async (file, options) => {
         const ctx = resolveContext(options.profile);
@@ -45,6 +51,12 @@ export function registerPushCommand(program, resolveContext) {
                 if (pushResult.invalid > 0) {
                     console.warn(`⚠️ Skipped ${pushResult.invalid} file(s) with invalid YAML frontmatter (run "emit status" or "emit pull" to inspect/repair).`);
                 }
+                if (pushResult.skippedItems && pushResult.skippedItems.length > 0) {
+                    console.warn(`⚠️ Skipped ${pushResult.skippedItems.length} article(s) with pending flags (conflict_pending, delete_pending, or taxonomy_apply_pending):`);
+                    for (const item of pushResult.skippedItems) {
+                        console.warn(`   - ${item.filePath} (${item.reason})`);
+                    }
+                }
                 if (pushResult.total === 0) {
                     console.log('✨ All valid articles are already in sync. Nothing to push.');
                     return;
@@ -90,11 +102,33 @@ export function registerPushCommand(program, resolveContext) {
                 token: ctx.auth.token,
                 refreshToken: ctx.auth.refreshToken,
                 allowPublish: options.allowPublish,
+                resolveTaxonomy: options.resolveTaxonomy,
+                allowWipeTaxonomies: options.allowWipeTaxonomies,
+                allowUnappliedTaxonomies: options.allowUnappliedTaxonomies,
+                noTaxonomyAudit: options.taxonomyAudit === false || Boolean(options.noTaxonomyAudit),
+                revive: options.revive,
+                force: options.force,
             });
             if (res.conflict) {
                 console.warn(`\n⚠️ Conflict encountered!`);
-                console.warn(`   Conflict markers have been written to ${res.filePath}.`);
-                console.warn(`   Please resolve the conflict manually or let AI resolve it, then re-push.`);
+                if (res.warnings && res.warnings.length > 0) {
+                    console.warn(`   Warnings:`);
+                    for (const w of res.warnings) {
+                        console.warn(`     👉 ${w}`);
+                    }
+                }
+                if (res.taxonomyConflict) {
+                    console.warn(`\n   Taxonomy conflict encountered: local and remote categories/tags diverged.`);
+                    console.warn(`   No conflict markers were written into the article body because the body was cleanly merged.`);
+                    console.warn(`   💡 To resolve and push, choose a resolution strategy:`);
+                    console.warn(`      emit push ${file} --resolve-taxonomy=union    (clean union of all terms)`);
+                    console.warn(`      emit push ${file} --resolve-taxonomy=local    (accept your local terms)`);
+                    console.warn(`      emit push ${file} --resolve-taxonomy=remote   (accept remote terms)`);
+                }
+                else {
+                    console.warn(`   Conflict markers have been written to ${res.filePath}.`);
+                    console.warn(`   Please resolve the conflict manually or let AI resolve it, then re-push.`);
+                }
             }
             else {
                 console.log(`✅ Successfully pushed ${res.id} -> ${res.filePath} (rev: ${res.rev})`);

package/dist/cli/commands/push.js.map

@@ -1 +1 @@
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package/dist/cli/commands/status.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"status.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/status.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAGzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,wBAAwB,CAAC;AAEnE,MAAM,WAAW,cAAc;IAC7B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,iBAAiB,EAAE,OAAO,CAAC;IAC3B,gGAAgG;IAChG,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;CACxB;AAED;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAC7B,OAAO,EAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAA;CAAE,EAC5C,eAAe,EAAE,oBAAoB,GAAG,IAAI,EAC5C,SAAS,CAAC,EAAE,MAAM,GACjB,cAAc,CAiBhB;AAED,wBAAgB,0BAA0B,CACxC,OAAO,EAAE,OAAO,EAChB,cAAc,EAAE,kBAAkB,GACjC,IAAI,CAsMN"}
+{"version":3,"file":"status.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/status.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAGzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,wBAAwB,CAAC;AAEnE,MAAM,WAAW,cAAc;IAC7B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,iBAAiB,EAAE,OAAO,CAAC;IAC3B,gGAAgG;IAChG,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;CACxB;AAED;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAC7B,OAAO,EAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAA;CAAE,EAC5C,eAAe,EAAE,oBAAoB,GAAG,IAAI,EAC5C,SAAS,CAAC,EAAE,MAAM,GACjB,cAAc,CAiBhB;AAED,wBAAgB,0BAA0B,CACxC,OAAO,EAAE,OAAO,EAChB,cAAc,EAAE,kBAAkB,GACjC,IAAI,CA+NN"}

package/dist/cli/commands/status.js

@@ -75,7 +75,11 @@ export function registerStatusInitCommands(program, resolveContext) {
         for (const item of displayItems) {
             let icon = '🟢';
             let label = 'synced  ';
-            if (item.syncStatus === 'modified') {
+            if (item.conflictPending) {
+                icon = '⚠️ ';
+                label = 'conflict';
+            }
+            else if (item.syncStatus === 'modified') {
                 icon = '🟡';
                 label = 'modified';
             }
@@ -95,6 +99,26 @@ export function registerStatusInitCommands(program, resolveContext) {
         }
         const invalidSuffix = status.summary.invalid > 0 ? `, ${status.summary.invalid} invalid` : '';
         console.log(`\nSummary: ${status.summary.total} total (${status.summary.synced} synced, ${status.summary.modified} modified, ${status.summary.untracked} untracked${invalidSuffix})\n`);
+        if (status.summary.flags &&
+            (status.summary.flags.conflictPending > 0 ||
+                status.summary.flags.orphan > 0 ||
+                status.summary.flags.deletePending > 0 ||
+                status.summary.flags.taxonomyApplyPending > 0)) {
+            const parts = [];
+            if (status.summary.flags.conflictPending > 0) {
+                parts.push(`${status.summary.flags.conflictPending} conflict pending`);
+            }
+            if (status.summary.flags.orphan > 0) {
+                parts.push(`${status.summary.flags.orphan} orphan`);
+            }
+            if (status.summary.flags.deletePending > 0) {
+                parts.push(`${status.summary.flags.deletePending} delete pending`);
+            }
+            if (status.summary.flags.taxonomyApplyPending > 0) {
+                parts.push(`${status.summary.flags.taxonomyApplyPending} taxonomy apply pending`);
+            }
+            console.log(`Flags: ${parts.join(', ')}\n`);
+        }
         if (status.summary.invalid > 0) {
             const uncachedInvalid = status.items.filter((i) => i.syncStatus === 'invalid' && i.cached === false);
             if (uncachedInvalid.length > 0) {

package/dist/cli/commands/status.js.map

@@ -1 +1 @@
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package/dist/cli/context.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"context.d.ts","sourceRoot":"","sources":["../../src/cli/context.ts"],"names":[],"mappings":"AAsBA,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAe,KAAK,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACnE,OAAO,EAIL,KAAK,cAAc,EACpB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAA4C,KAAK,UAAU,EAAE,MAAM,oBAAoB,CAAC;AAO/F,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,cAAc,CAAC;IACtB,KAAK,EAAE,aAAa,CAAC;IACrB,MAAM,EAAE,UAAU,CAAC;IACnB,IAAI,EAAE,YAAY,CAAC;IACnB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,MAAM,kBAAkB,GAAG,CAC/B,WAAW,CAAC,EAAE,MAAM,EACpB,OAAO,CAAC,EAAE;IAAE,YAAY,CAAC,EAAE,OAAO,CAAA;CAAE,KACjC,UAAU,CAAC;AAEhB,6EAA6E;AAC7E,eAAO,MAAM,eAAe,UAAW,MAAM,KAAG,MAA0C,CAAC;AAC3F,eAAO,MAAM,UAAU,MAAO,MAAM,KAAK,MAAM,KAAG,OACP,CAAC;AAE5C,MAAM,WAAW,aAAa;IAC5B,wFAAwF;IACxF,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,iDAAiD;IACjD,qBAAqB,CAAC,EAAE,MAAM,CAAC;IAC/B,+EAA+E;IAC/E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,iGAAiG;IACjG,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,+FAA+F;IAC/F,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,+FAA+F;IAC/F,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;CACxB;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,aAAa,GAAG,gBAAgB,CAmE9E;AAED,wBAAgB,wBAAwB,IAAI,kBAAkB,CAiG7D"}
+{"version":3,"file":"context.d.ts","sourceRoot":"","sources":["../../src/cli/context.ts"],"names":[],"mappings":"AAsBA,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAe,KAAK,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACnE,OAAO,EAIL,KAAK,cAAc,EACpB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAA4C,KAAK,UAAU,EAAE,MAAM,oBAAoB,CAAC;AAO/F,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,cAAc,CAAC;IACtB,KAAK,EAAE,aAAa,CAAC;IACrB,MAAM,EAAE,UAAU,CAAC;IACnB,IAAI,EAAE,YAAY,CAAC;IACnB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,MAAM,kBAAkB,GAAG,CAC/B,WAAW,CAAC,EAAE,MAAM,EACpB,OAAO,CAAC,EAAE;IAAE,YAAY,CAAC,EAAE,OAAO,CAAA;CAAE,KACjC,UAAU,CAAC;AAEhB,6EAA6E;AAC7E,eAAO,MAAM,eAAe,UAAW,MAAM,KAAG,MAA0C,CAAC;AAC3F,eAAO,MAAM,UAAU,MAAO,MAAM,KAAK,MAAM,KAAG,OACP,CAAC;AAE5C,MAAM,WAAW,aAAa;IAC5B,wFAAwF;IACxF,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,iDAAiD;IACjD,qBAAqB,CAAC,EAAE,MAAM,CAAC;IAC/B,+EAA+E;IAC/E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,iGAAiG;IACjG,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,+FAA+F;IAC/F,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,+FAA+F;IAC/F,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;CACxB;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,aAAa,GAAG,gBAAgB,CAmE9E;AAED,wBAAgB,wBAAwB,IAAI,kBAAkB,CA2G7D"}

package/dist/cli/context.js

@@ -160,7 +160,18 @@ export function createCliContextResolver() {
             process.exit(1);
         }
         const paths = getWorkspacePaths(workspaceRoot);
-        const cache = new CacheDatabase(paths.dbPath);
+        let cache;
+        try {
+            cache = new CacheDatabase(paths.dbPath);
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            if (msg.includes('[CACHE_SCHEMA_MISMATCH]')) {
+                console.error(`\n❌ Error: ${msg}\n`);
+                process.exit(1);
+            }
+            throw err;
+        }
         const config = preConfig && preResolvedWorkspace === workspaceRoot ? preConfig : loadConfig(workspaceRoot);
         const configuredOrigin = config.origin !== DEFAULT_ORIGIN ? config.origin : undefined;
         const resolution = resolveOriginPriority({

package/dist/cli/context.js.map

@@ -1 +1 @@
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package/dist/client/api.d.ts

@@ -16,4 +16,10 @@ export declare function unwrapItem<T = Record<string, unknown>>(raw: unknown): T
  * Extracts revision string from an API response, prioritizing data._rev over item._rev, rev, version.
  */
 export declare function extractRev(raw: unknown, fallback?: string): string;
+/**
+ * Normalizes revision representation (pure number, base64-encoded token, or colon-delimited)
+ * to its canonical numeric string when possible, allowing reliable parity comparisons.
+ * e.g. "1", "1:2026-10-31...", "MToyMDI2LTEwLTMxVDAwOjE2OjI4Ljk1MFo=" all normalize to "1".
+ */
+export declare function normalizeRev(rev: unknown): string;
 //# sourceMappingURL=api.d.ts.map