daftari 1.8.0 → 1.9.1

package/dist/storage/index-db.js

@@ -2,31 +2,62 @@
 //
 // The index is a derived cache: it holds nothing the markdown files don't
 // already hold, so .daftari/index.db can be deleted and rebuilt at any time
-// (see search/reindex.ts). Three tables carry the search payload:
+// (see search/reindex.ts). Five tables carry the search payload:
 //
-//   documents  — one row per markdown file: frontmatter fields, the full body,
-//                and the BM25 token list (JSON).
-//   chunks     — one row per embedded text chunk: the chunk text and a
-//                content_hash (sha256 of the chunk text) that joins to the
-//                embeddings table for the current model.
-//   embeddings — one row per (content_hash, model) pair. Content-addressed,
-//                so identical chunk text shares one row across files and
-//                across reindexes. A model migration can keep the same
-//                content_hash present under two model values at once, which
-//                is why the primary key is composite.
+//   documents      — one row per markdown file: frontmatter fields, the full
+//                    body, and the (legacy) BM25 token list (JSON).
+//   chunks         — one row per embedded text chunk: the chunk text and a
+//                    content_hash (sha256 of the chunk text) that joins to the
+//                    embeddings table for the current model.
+//   embeddings     — one row per (content_hash, model) pair, with a `dim`
+//                    column recording the vector dimension. Content-addressed,
+//                    so identical chunk text shares one row across files and
+//                    across reindexes. The composite (content_hash, model)
+//                    primary key lets two providers' vectors (e.g. local-
+//                    minilm 384 + openai-3-small 1536) coexist for the same
+//                    chunk text — handy when switching providers without
+//                    losing the old cache. `dim` is defense-in-depth: callers
+//                    can detect a corrupt or cross-provider mix at read time,
+//                    even though the model id already scopes the join.
+//   documents_fts  — FTS5 virtual table (contentless link to `documents`).
+//                    Title, tags, and body tokens, ranked with BM25. Kept in
+//                    sync by AFTER INSERT / UPDATE / DELETE triggers on
+//                    `documents`, so writes never touch the virtual table
+//                    directly. Replaces the hand-rolled BM25 over the legacy
+//                    `documents.tokens` column.
+//   embeddings_vec — sqlite-vec `vec0` virtual table, an indexed mirror of
+//                    `embeddings` for vector queries. Rebuilt at the active
+//                    provider's dim — switching providers between server runs
+//                    triggers a drop-and-recreate (the durable `embeddings`
+//                    table is untouched). Population is the reindex path's
+//                    job; this file just exposes the schema.
 //
 // A small meta table records index-wide facts (embedding dimension, whether
-// vectors were built, when the index was last rebuilt).
+// vectors were built, when the index was last rebuilt, the dim that
+// `embeddings_vec` was created at).
 import { mkdirSync } from "node:fs";
 import { join } from "node:path";
 import Database from "better-sqlite3";
+import * as sqliteVec from "sqlite-vec";
 import { err, ok } from "../frontmatter/types.js";
-const SCHEMA_VERSION = "3";
+// Bumped 4 → 5 to add FTS5 (`documents_fts`) and sqlite-vec (`embeddings_vec`)
+// virtual tables for SQL-native search. The index is a derived cache so the
+// bump triggers a clean rebuild (see openIndexDb); no in-place migration.
+const SCHEMA_VERSION = "5";
+// Meta key that records the dim at which `embeddings_vec` was created. Used
+// on every open to decide whether to rebuild the virtual table (provider
+// switch). The durable `embeddings` cache is per-(model, dim) so it survives
+// the vec-table rebuild and a switch-back to the previous provider is all
+// cache hits.
+const VEC_DIM_META_KEY = "embeddings_vec_dim";
 // The .daftari control directory is excluded from vault listings, so the index
 // file lives there without ever being mistaken for vault content.
 export function indexDbPath(vaultRoot) {
     return join(vaultRoot, ".daftari", "index.db");
 }
+// Non-virtual schema. Virtual tables (`documents_fts`, `embeddings_vec`) are
+// created separately because their CREATE statements depend on runtime values
+// (the active provider's dim) and need the sqlite-vec extension loaded first.
 const SCHEMA = `
 CREATE TABLE IF NOT EXISTS documents (
   path          TEXT PRIMARY KEY,
@@ -54,6 +85,7 @@ CREATE INDEX IF NOT EXISTS idx_chunks_content_hash ON chunks(content_hash);
 CREATE TABLE IF NOT EXISTS embeddings (
   content_hash TEXT NOT NULL,
   model        TEXT NOT NULL,
+  dim          INTEGER NOT NULL,
   embedding    BLOB NOT NULL,
   created_at   TEXT NOT NULL,
   PRIMARY KEY (content_hash, model)
@@ -63,11 +95,166 @@ CREATE TABLE IF NOT EXISTS meta (
   value TEXT NOT NULL
 );
 `;
-export function openIndexDb(vaultRoot) {
+// FTS5 virtual table over the `documents` body + title + tags. The
+// `content='documents'` link is a "contentless" external-content FTS5
+// index — the virtual table stores tokens, not its own copy of the text,
+// so writes pay one storage cost, not two. AFTER INSERT/UPDATE/DELETE
+// triggers on `documents` keep the FTS index in sync so the write path
+// never touches the virtual table directly. Porter + unicode61 is the
+// stock English stemming pipeline; it lowercases, strips diacritics, and
+// folds plurals / -ing forms.
+const FTS_SCHEMA = `
+CREATE VIRTUAL TABLE IF NOT EXISTS documents_fts USING fts5(
+  title, tags, content_body,
+  content='documents',
+  content_rowid='rowid',
+  tokenize='porter unicode61'
+);
+CREATE TRIGGER IF NOT EXISTS documents_ai AFTER INSERT ON documents BEGIN
+  INSERT INTO documents_fts(rowid, title, tags, content_body)
+  VALUES (new.rowid, new.title, new.tags, new.content);
+END;
+CREATE TRIGGER IF NOT EXISTS documents_ad AFTER DELETE ON documents BEGIN
+  INSERT INTO documents_fts(documents_fts, rowid, title, tags, content_body)
+  VALUES('delete', old.rowid, old.title, old.tags, old.content);
+END;
+CREATE TRIGGER IF NOT EXISTS documents_au AFTER UPDATE ON documents BEGIN
+  INSERT INTO documents_fts(documents_fts, rowid, title, tags, content_body)
+  VALUES('delete', old.rowid, old.title, old.tags, old.content);
+  INSERT INTO documents_fts(rowid, title, tags, content_body)
+  VALUES (new.rowid, new.title, new.tags, new.content);
+END;
+`;
+// Loads the sqlite-vec loadable extension and runs a 1-vector roundtrip to
+// confirm ABI compatibility. Returns Result so the caller (openIndexDb) can
+// surface an actionable message to the operator.
+// Three realistic failure modes, each with a different fix:
+//   1. Platform binary not installed — happens when `npm install` was run
+//      with `--omit=optional`, so the per-platform sqlite-vec package was
+//      never downloaded. Fix: re-run `npm install` without that flag.
+//   2. Extension loading disabled — better-sqlite3 was compiled with
+//      SQLITE_OMIT_LOAD_EXTENSION or the feature was stripped by a distro
+//      package. Fix: rebuild from source.
+//   3. ABI / dlopen error — native library found but refused by the OS
+//      (e.g. wrong architecture, missing dylib dependency). Message carries
+//      the OS reason verbatim.
+// After load() returns, a 1-vector KNN roundtrip catches the case where the
+// extension was dlopen'd but the SQLite virtual-table machinery is broken —
+// a silent ABI mismatch that `load()` itself would not detect.
+function loadVecExtension(db) {
+    try {
+        sqliteVec.load(db);
+    }
+    catch (e) {
+        const reason = e instanceof Error ? e.message : String(e);
+        let hint;
+        if (reason.includes("Cannot find module") || reason.includes("not found")) {
+            // require.resolve threw MODULE_NOT_FOUND — the per-platform binary
+            // package was never installed (most commonly: npm install --omit=optional).
+            hint =
+                "The sqlite-vec platform binary was not installed. " +
+                    "Re-run `npm install` without --omit=optional.";
+        }
+        else if (reason.includes("not authorized") ||
+            reason.includes("extension loading") ||
+            reason.includes("SQLITE_ERROR")) {
+            // db.loadExtension threw because the better-sqlite3 build has
+            // extension loading compiled out.
+            hint = "Rebuild better-sqlite3 with extension loading enabled: `npm rebuild better-sqlite3 --build-from-source`.";
+        }
+        else {
+            // ABI mismatch, OS security policy, or other native-load error.
+            hint = "Check that the sqlite-vec binary is compatible with this platform.";
+        }
+        return err(new Error(`cannot load sqlite-vec extension: ${reason}. ${hint}`));
+    }
+    // ABI smoke-test: insert one vector and retrieve it. Uses temp.schema
+    // (CREATE VIRTUAL TABLE temp._vec_smoke) because SQLite does not allow
+    // CREATE TEMP VIRTUAL TABLE syntax, but does allow schema-qualified names
+    // that target the temp database. The table is dropped after the test so no
+    // permanent schema changes land.
+    const smokeBlob = Buffer.from(new Float32Array([1.0]).buffer);
+    try {
+        db.exec("CREATE VIRTUAL TABLE temp._vec_smoke USING vec0(v FLOAT[1] distance_metric=cosine);");
+        db.prepare("INSERT INTO temp._vec_smoke(v) VALUES (?)").run(smokeBlob);
+        const rows = db
+            .prepare("SELECT * FROM temp._vec_smoke WHERE v MATCH ? AND k = ?")
+            .all(smokeBlob, 1);
+        db.exec("DROP TABLE IF EXISTS temp._vec_smoke;");
+        if (rows.length !== 1) {
+            return err(new Error("sqlite-vec loaded but smoke-test returned no rows — " +
+                "possible ABI mismatch between the sqlite-vec binary and this build of better-sqlite3"));
+        }
+    }
+    catch (e) {
+        try {
+            db.exec("DROP TABLE IF EXISTS _vec_smoke;");
+        }
+        catch {
+            // best-effort cleanup; ignore secondary failure
+        }
+        const reason = e instanceof Error ? e.message : String(e);
+        return err(new Error(`sqlite-vec loaded but smoke-test failed: ${reason} — ` +
+            "possible ABI mismatch between the sqlite-vec binary and this build of better-sqlite3"));
+    }
+    return ok(undefined);
+}
+// Creates the sqlite-vec virtual table at the given dim, dropping any
+// existing copy first. `dim` is fixed at CREATE TABLE time for vec0, so a
+// provider switch (which changes the active dim) means dropping and
+// recreating; the durable `embeddings` cache survives, and the next reindex
+// repopulates `embeddings_vec` from it.
+function createVecTable(db, dim) {
+    if (!Number.isInteger(dim) || dim <= 0) {
+        throw new Error(`cannot create embeddings_vec at non-positive dim ${dim} — ` +
+            "the active embedding provider must declare a positive integer dim");
+    }
+    db.exec("DROP TABLE IF EXISTS embeddings_vec;");
+    db.exec(`CREATE VIRTUAL TABLE embeddings_vec USING vec0(
+       content_hash TEXT NOT NULL,
+       model        TEXT NOT NULL,
+       embedding    FLOAT[${dim}] distance_metric=cosine
+     );`);
+    setMeta(db, VEC_DIM_META_KEY, String(dim));
+}
+// Drops every row from `embeddings_vec`. Called by the reindex path when
+// it needs to repopulate the vec table from scratch (e.g. after a dim
+// rebuild). Cheaper and clearer than a per-row delete in the common case.
+export function clearEmbeddingsVec(db) {
+    db.exec("DELETE FROM embeddings_vec;");
+}
+// Inserts a vector row into the sqlite-vec mirror. Separate from
+// `insertEmbedding` because the durable cache and the vec index are two
+// stores — the cache survives a vec-table rebuild on provider switch.
+export function insertEmbeddingVec(db, contentHash, model, embedding) {
+    db.prepare("INSERT INTO embeddings_vec(content_hash, model, embedding) VALUES (?, ?, ?)").run(contentHash, model, embeddingToBlob(embedding));
+}
+// Deletes the vec-mirror rows for a single content_hash. Used by the
+// orphan gc pass so the vec index never carries vectors whose chunks are
+// gone.
+function deleteEmbeddingsVecForHash(db, contentHash) {
+    db.prepare("DELETE FROM embeddings_vec WHERE content_hash = ?").run(contentHash);
+}
+// `expectedVecDim` is the active embedding provider's dim. If the persisted
+// `embeddings_vec` was created at a different dim (or doesn't exist yet),
+// it is dropped and recreated at the expected dim — the durable `embeddings`
+// cache is untouched, so a switch back to the previous provider is all
+// cache hits. `expectedVecDim` is required — pass the active provider's dim
+// (e.g. `getProvider().dim`). Tests that don't exercise vector queries should
+// use `LOCAL_MINILM_DIM` from `src/search/providers/local-minilm.ts`.
+export function openIndexDb(vaultRoot, expectedVecDim) {
     try {
         mkdirSync(join(vaultRoot, ".daftari"), { recursive: true });
         const db = new Database(indexDbPath(vaultRoot));
         db.pragma("journal_mode = WAL");
+        // Load sqlite-vec BEFORE any CREATE VIRTUAL TABLE that uses `vec0` runs.
+        // A failure here is loud and actionable — the server refuses to start
+        // rather than silently falling back to brute-force cosine.
+        const loaded = loadVecExtension(db);
+        if (!loaded.ok) {
+            db.close();
+            return loaded;
+        }
         // Ensure the meta table exists before reading schema_version from it.
         db.exec(`CREATE TABLE IF NOT EXISTS meta (
       key   TEXT PRIMARY KEY,
@@ -77,13 +264,35 @@ export function openIndexDb(vaultRoot) {
         if (stored !== SCHEMA_VERSION) {
             // Schema bump means a clean rebuild: every derived table is dropped and
             // the freshness manifest is cleared so the next reindex repopulates
-            // everything. Trying to ALTER across this change would race the new
-            // composite-PK embeddings table; the markdown files are the source of
-            // truth and the index is cheap to regenerate.
-            db.exec("DROP TABLE IF EXISTS documents; DROP TABLE IF EXISTS chunks; DROP TABLE IF EXISTS embeddings;");
+            // everything. Trying to ALTER across this change would race column
+            // additions (3 → 4 added embeddings.dim) and virtual-table creations
+            // (4 → 5 added documents_fts + embeddings_vec) against existing rows;
+            // the markdown files are the source of truth and the index is cheap to
+            // regenerate.
+            db.exec("DROP TRIGGER IF EXISTS documents_ai;" +
+                "DROP TRIGGER IF EXISTS documents_ad;" +
+                "DROP TRIGGER IF EXISTS documents_au;" +
+                "DROP TABLE IF EXISTS documents_fts;" +
+                "DROP TABLE IF EXISTS embeddings_vec;" +
+                "DROP TABLE IF EXISTS documents;" +
+                "DROP TABLE IF EXISTS chunks;" +
+                "DROP TABLE IF EXISTS embeddings;");
             db.prepare("DELETE FROM meta WHERE key = ?").run("vault_manifest");
+            db.prepare("DELETE FROM meta WHERE key = ?").run(VEC_DIM_META_KEY);
         }
         db.exec(SCHEMA);
+        db.exec(FTS_SCHEMA);
+        // If the persisted dim matches AND the virtual table already exists, leave
+        // it alone — recreating would drop all the indexed vectors for no reason.
+        const targetDim = expectedVecDim;
+        const persistedDimRaw = getMeta(db, VEC_DIM_META_KEY);
+        const persistedDim = persistedDimRaw ? Number.parseInt(persistedDimRaw, 10) : null;
+        const vecTableExists = db
+            .prepare("SELECT COUNT(*) AS n FROM sqlite_master WHERE type='table' AND name=?")
+            .get("embeddings_vec").n > 0;
+        if (!vecTableExists || persistedDim !== targetDim) {
+            createVecTable(db, targetDim);
+        }
         setMeta(db, "schema_version", SCHEMA_VERSION);
         return ok(db);
     }
@@ -119,10 +328,29 @@ export function blobToEmbedding(blob) {
 }
 // --- writes ----------------------------------------------------------------
 export function insertDocument(db, doc) {
-    db.prepare(`INSERT OR REPLACE INTO documents
+    // ON CONFLICT(path) DO UPDATE (rather than INSERT OR REPLACE) is required
+    // so the AFTER UPDATE trigger on `documents` fires and keeps
+    // `documents_fts` in sync. SQLite's OR REPLACE conflict resolution does
+    // NOT fire DELETE/UPDATE triggers for the conflicting row — using it
+    // would leave the FTS5 index pointing at stale terms after every
+    // document overwrite.
+    db.prepare(`INSERT INTO documents
        (path, title, collection, domain, status, confidence, updated, tags, content, tokens,
         ttl_days, created, superseded_by)
-     VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`).run(doc.path, doc.title, doc.collection, doc.domain, doc.status, doc.confidence, doc.updated, JSON.stringify(doc.tags), doc.content, JSON.stringify(doc.tokens), doc.ttlDays, doc.created, doc.supersededBy);
+     VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+     ON CONFLICT(path) DO UPDATE SET
+       title         = excluded.title,
+       collection    = excluded.collection,
+       domain        = excluded.domain,
+       status        = excluded.status,
+       confidence    = excluded.confidence,
+       updated       = excluded.updated,
+       tags          = excluded.tags,
+       content       = excluded.content,
+       tokens        = excluded.tokens,
+       ttl_days      = excluded.ttl_days,
+       created       = excluded.created,
+       superseded_by = excluded.superseded_by`).run(doc.path, doc.title, doc.collection, doc.domain, doc.status, doc.confidence, doc.updated, JSON.stringify(doc.tags), doc.content, JSON.stringify(doc.tokens), doc.ttlDays, doc.created, doc.supersededBy);
 }
 export function insertChunkRow(db, chunk) {
     db.prepare(`INSERT OR REPLACE INTO chunks (path, chunk_index, text, content_hash)
@@ -149,19 +377,44 @@ export function existingEmbeddingHashes(db, model, hashes) {
     }
     return found;
 }
-export function insertEmbedding(db, contentHash, model, embedding, createdAt) {
-    db.prepare(`INSERT OR REPLACE INTO embeddings (content_hash, model, embedding, created_at)
-     VALUES (?, ?, ?, ?)`).run(contentHash, model, embeddingToBlob(embedding), createdAt);
+// Persists a vector under (content_hash, model). `dim` is asserted to match
+// `embedding.length` — a mismatch would write a corrupt row that the cosine
+// math reads back as silent garbage. The store stays oblivious to which
+// provider produced the vector; callers pass the provider's `id` and `dim`.
+export function insertEmbedding(db, contentHash, model, embedding, createdAt, dim) {
+    if (embedding.length !== dim) {
+        throw new Error(`embedding length ${embedding.length} does not match declared dim ${dim} ` +
+            `for model '${model}' — refusing to write a corrupt cache row`);
+    }
+    db.prepare(`INSERT OR REPLACE INTO embeddings (content_hash, model, dim, embedding, created_at)
+     VALUES (?, ?, ?, ?, ?)`).run(contentHash, model, dim, embeddingToBlob(embedding), createdAt);
 }
 // Deletes every embeddings row whose content_hash is referenced by no chunks
-// row. Called at the end of a reindex to reap entries for chunks that no
-// longer exist anywhere in the vault. Returns the number of rows deleted.
+// row, and removes the matching rows from the sqlite-vec mirror. Called at
+// the end of a reindex to reap entries for chunks that no longer exist
+// anywhere in the vault. Returns the number of `embeddings` rows deleted —
+// the vec-mirror counts piggy-back and are not reported separately.
 export function gcOrphanedEmbeddings(db) {
-    const info = db
-        .prepare(`DELETE FROM embeddings
-       WHERE content_hash NOT IN (SELECT content_hash FROM chunks)`)
-        .run();
-    return info.changes;
+    // Collect the orphan hashes first so we can drop them from both stores in
+    // one pass. The `embeddings_vec` virtual table doesn't support correlated
+    // subqueries on its meta columns reliably, so we go through prepared
+    // deletes by hash.
+    const orphans = db
+        .prepare(`SELECT content_hash
+         FROM embeddings
+        WHERE content_hash NOT IN (SELECT content_hash FROM chunks)`)
+        .all();
+    if (orphans.length === 0)
+        return 0;
+    const drop = db.transaction(() => {
+        const dropEmb = db.prepare("DELETE FROM embeddings WHERE content_hash = ?");
+        for (const { content_hash } of orphans) {
+            dropEmb.run(content_hash);
+            deleteEmbeddingsVecForHash(db, content_hash);
+        }
+    });
+    drop();
+    return orphans.length;
 }
 export function setMeta(db, key, value) {
     db.prepare("INSERT OR REPLACE INTO meta (key, value) VALUES (?, ?)").run(key, value);
@@ -191,40 +444,58 @@ export function getDocument(db, path) {
     const row = db.prepare("SELECT * FROM documents WHERE path = ?").get(path);
     return row ? rowToDocument(row) : null;
 }
-function rowToChunk(row) {
+// Converts a join row to the public chunk shape. The embedding is read iff
+// its stored dim matches the active provider's expected dim — a mismatch
+// would only happen if a row was written under different metadata than its
+// blob (a bug or hand-edit), and we'd rather skip it than score with garbage.
+// `expectedDim` may be 0 to opt out of the check (legacy callers in tests).
+function rowToChunk(row, expectedDim) {
+    let embedding = null;
+    if (row.embedding) {
+        const blobOk = expectedDim === 0 || row.embedding.length === expectedDim * 4;
+        const dimOk = expectedDim === 0 || row.dim === expectedDim;
+        if (blobOk && dimOk) {
+            embedding = blobToEmbedding(row.embedding);
+        }
+        // Silent skip — vector ranking just falls back as if this row had no
+        // embedding for the join. A noisy log here would be invoked per-chunk on
+        // a long mismatch; the conditions are bugs surfaced by tests instead.
+    }
     return {
         path: row.path,
         chunkIndex: row.chunk_index,
         text: row.text,
         contentHash: row.content_hash,
-        embedding: row.embedding ? blobToEmbedding(row.embedding) : null,
+        embedding,
     };
 }
 // Reads every chunk LEFT JOINed against the embeddings cache, filtered to
 // `model`. A chunk whose content_hash has no embeddings row for this model
 // (e.g. the model was unavailable during reindex) comes back with embedding =
 // null and the vector ranker simply skips it, matching the old NULL-blob
-// behaviour.
-export function getAllChunks(db, model) {
+// behaviour. `expectedDim` is a defense-in-depth check: any row whose stored
+// dim or blob byte length disagrees is treated as missing, so a corrupt or
+// cross-provider mix can't poison cosine math.
+export function getAllChunks(db, model, expectedDim = 0) {
     const rows = db
-        .prepare(`SELECT c.path, c.chunk_index, c.text, c.content_hash, e.embedding
+        .prepare(`SELECT c.path, c.chunk_index, c.text, c.content_hash, e.embedding, e.dim
          FROM chunks c
          LEFT JOIN embeddings e
            ON e.content_hash = c.content_hash AND e.model = ?
         ORDER BY c.path, c.chunk_index`)
         .all(model);
-    return rows.map(rowToChunk);
+    return rows.map((row) => rowToChunk(row, expectedDim));
 }
-export function getChunksForPath(db, path, model) {
+export function getChunksForPath(db, path, model, expectedDim = 0) {
     const rows = db
-        .prepare(`SELECT c.path, c.chunk_index, c.text, c.content_hash, e.embedding
+        .prepare(`SELECT c.path, c.chunk_index, c.text, c.content_hash, e.embedding, e.dim
          FROM chunks c
          LEFT JOIN embeddings e
            ON e.content_hash = c.content_hash AND e.model = ?
         WHERE c.path = ?
         ORDER BY c.chunk_index`)
         .all(model, path);
-    return rows.map(rowToChunk);
+    return rows.map((row) => rowToChunk(row, expectedDim));
 }
 export function getMeta(db, key) {
     const row = db.prepare("SELECT value FROM meta WHERE key = ?").get(key);
@@ -238,4 +509,15 @@ export function embeddingCount(db) {
     const row = db.prepare("SELECT COUNT(*) AS n FROM embeddings").get();
     return row.n;
 }
+// Counts embedding cache rows for `model` whose stored `dim` does not match
+// `expectedDim`. A non-zero result means some cached vectors will be silently
+// skipped by `rowToChunk`'s dim-guard, so vector search falls back to
+// keyword-only for those chunks. Exposed via vault_status so operators can
+// detect a corrupt cache without digging through logs.
+export function countDimMismatches(db, model, expectedDim) {
+    const row = db
+        .prepare("SELECT COUNT(*) AS n FROM embeddings WHERE model = ? AND dim != ?")
+        .get(model, expectedDim);
+    return row.n;
+}
 //# sourceMappingURL=index-db.js.map

package/dist/storage/index-db.js.map

@@ -1 +1 @@
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package/dist/tools/read.d.ts

@@ -74,6 +74,7 @@ export interface VaultStatusResult {
     stalenessDistribution: StalenessDistribution;
     unresolvedTensions: UnresolvedTensions;
     recentWrites: RecentWrites;
+    embeddingDimMismatches: number;
 }
 export declare function vaultStatus(vaultRoot: string, access?: AccessContext): Promise<Result<VaultStatusResult, Error>>;
 export declare const readTools: ToolDefinition[];

package/dist/tools/read.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"read.d.ts","sourceRoot":"","sources":["../../src/tools/read.ts"],"names":[],"mappings":"AAMA,OAAO,EAAE,KAAK,aAAa,EAAmC,MAAM,mBAAmB,CAAC;AACxF,OAAO,EAAgB,KAAK,UAAU,EAAE,MAAM,sBAAsB,CAAC;AACrE,OAAO,EAAE,KAAK,eAAe,EAAqB,MAAM,2BAA2B,CAAC;AAIpF,OAAO,EAGL,KAAK,WAAW,EAEhB,KAAK,MAAM,EAEX,KAAK,gBAAgB,EACtB,MAAM,yBAAyB,CAAC;AAMjC,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAGrC,OAAO,EAAE,CACP,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,MAAM,CAAC,EAAE,aAAa,KACnB,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,KAAK,CAAC,CAAC,CAAC;CACtC;AAMD,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,WAAW,EAAE,WAAW,CAAC;IACzB,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAC7B,UAAU,EAAE,gBAAgB,CAAC;IAC7B,cAAc,EAAE,OAAO,CAAC;IACxB,KAAK,EAAE,UAAU,GAAG,IAAI,CAAC;IAGzB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,wBAAsB,SAAS,CAC7B,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,MAAM,EACZ,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,eAAe,EAAE,KAAK,CAAC,CAAC,CAkCzC;AAMD,MAAM,WAAW,iBAAiB;IAChC,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAGhB,aAAa,CAAC,EAAE,OAAO,CAAC;CACzB;AAED,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;IACnB,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,iBAAiB,EAAE,MAAM,EAAE,CAAC;IAC5B,eAAe,EAAE,MAAM,EAAE,CAAC;IAC1B,KAAK,EAAE,OAAO,CAAC;CAChB;AAED,MAAM,WAAW,gBAAgB;IAC/B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,eAAe,EAAE,CAAC;CAC5B;AAUD,wBAAsB,UAAU,CAC9B,SAAS,EAAE,MAAM,EACjB,OAAO,GAAE,iBAAsB,EAC/B,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,gBAAgB,EAAE,KAAK,CAAC,CAAC,CA6C1C;AASD,MAAM,WAAW,qBAAqB;IACpC,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,cAAc;IAC7B,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,kBAAkB;IACjC,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,cAAc,EAAE,CAAC;CAC1B;AAED,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,eAAe,EAAE,CAAC;CAC5B;AAED,MAAM,WAAW,iBAAiB;IAChC,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE;QAAE,UAAU,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;IACrD,YAAY,EAAE,MAAM,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;IACpB,qBAAqB,EAAE,qBAAqB,CAAC;IAC7C,kBAAkB,EAAE,kBAAkB,CAAC;IACvC,YAAY,EAAE,YAAY,CAAC;IAM3B,sBAAsB,EAAE,MAAM,CAAC;CAChC;AASD,wBAAsB,WAAW,CAC/B,SAAS,EAAE,MAAM,EACjB,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,iBAAiB,EAAE,KAAK,CAAC,CAAC,CA+F3C;AAgBD,eAAO,MAAM,SAAS,EAAE,cAAc,EAmFrC,CAAC"}

package/dist/tools/read.js

@@ -10,7 +10,9 @@ import { listStaleFiles } from "../curation/staleness.js";
 import { DEFAULT_TENSION_STATUS, listTensions } from "../curation/tension.js";
 import { parseDocument } from "../frontmatter/parser.js";
 import { DOMAINS, err, ok, STATUSES, } from "../frontmatter/types.js";
+import { countDimMismatches, openIndexDb } from "../storage/index-db.js";
 import { listFiles, readFile, resolveVaultPath } from "../storage/local.js";
+import { getProvider } from "../search/vector.js";
 import { sha256Hex } from "../utils/hash.js";
 export async function vaultRead(vaultRoot, path, access) {
     if (typeof path !== "string" || path.length === 0) {
@@ -168,6 +170,21 @@ export async function vaultStatus(vaultRoot, access) {
     const visibleWrites = access
         ? log.value.filter((e) => canRead(access.role, topCollection(e.file)))
         : log.value;
+    // Dim-mismatch counter. A non-zero value means some embedding cache rows
+    // for the active model have the wrong dim and are being silently skipped
+    // by vector ranking. We open the DB defensively — if sqlite-vec isn't
+    // installed or the index hasn't been built yet, the field is 0.
+    const provider = getProvider();
+    let embeddingDimMismatches = 0;
+    const dbResult = openIndexDb(vaultRoot, provider.dim);
+    if (dbResult.ok) {
+        try {
+            embeddingDimMismatches = countDimMismatches(dbResult.value, provider.id, provider.dim);
+        }
+        finally {
+            dbResult.value.close();
+        }
+    }
     return ok({
         vault: vaultRoot,
         fileCount: index.value.count,
@@ -183,6 +200,7 @@ export async function vaultStatus(vaultRoot, access) {
             count: visibleWrites.length,
             entries: visibleWrites.slice(-10),
         },
+        embeddingDimMismatches,
     });
 }
 // ---------------------------------------------------------------------------

package/dist/tools/read.js.map

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package/dist/tools/search.d.ts.map

@@ -1 +1 @@
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