daftari 1.7.1 → 1.9.0

package/dist/search/watcher.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"watcher.js","sourceRoot":"","sources":["../../src/search/watcher.ts"],"names":[],"mappings":"AAAA,8BAA8B;AAC9B,EAAE;AACF,2EAA2E;AAC3E,2EAA2E;AAC3E,2EAA2E;AAC3E,yEAAyE;AACzE,2EAA2E;AAC3E,yEAAyE;AACzE,4EAA4E;AAC5E,2EAA2E;AAC3E,qEAAqE;AACrE,2EAA2E;AAC3E,6DAA6D;AAC7D,EAAE;AACF,uEAAuE;AACvE,sEAAsE;AACtE,yEAAyE;AACzE,0EAA0E;AAC1E,yEAAyE;AACzE,EAAE;AACF,uEAAuE;AACvE,2EAA2E;AAC3E,4EAA4E;AAC5E,uEAAuE;AACvE,iCAAiC;AACjC,EAAE;AACF,wEAAwE;AACxE,uEAAuE;AACvE,eAAe;AAEf,OAAO,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAC;AACxC,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,EAAE,MAAM,WAAW,CAAC;AACnD,OAAO,EAAE,OAAO,IAAI,QAAQ,EAAkB,MAAM,UAAU,CAAC;AAC/D,OAAO,EAAE,EAAE,EAAe,MAAM,yBAAyB,CAAC;AAC1D,OAAO,EAAE,cAAc,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AACrE,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AACvD,OAAO,EAAE,cAAc,EAAE,gBAAgB,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAC;AACnF,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAC7C,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AACnD,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAE1C,6EAA6E;AAC7E,qEAAqE;AACrE,yEAAyE;AACzE,uBAAuB;AACvB,MAAM,CAAC,MAAM,iBAAiB,GAAG,GAAG,CAAC;AA2BrC,4EAA4E;AAC5E,uEAAuE;AACvE,SAAS,cAAc,CAAC,IAAoB;IAG1C,OAAO;QACL,GAAG,EAAE,IAAI,CAAC,GAAG,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QACrD,UAAU,EAAE,IAAI,CAAC,UAAU,IAAI,iBAAiB;QAChD,OAAO,EAAE,IAAI,CAAC,OAAO,IAAI,aAAa;QACtC,QAAQ,EAAE,IAAI,CAAC,QAAQ,IAAI,eAAe;QAC1C,MAAM,EAAE,IAAI,CAAC,MAAM,IAAI,aAAa;QACpC,cAAc,EAAE,IAAI,CAAC,cAAc;KACpC,CAAC;AACJ,CAAC;AAED,uEAAuE;AACvE,0EAA0E;AAC1E,yEAAyE;AACzE,wEAAwE;AACxE,KAAK,UAAU,eAAe,CAC5B,SAAiB,EACjB,OAAe;IAEf,MAAM,QAAQ,GAAG,WAAW,CAAC,SAAS,EAAE,WAAW,EAAE,CAAC,GAAG,CAAC,CAAC;IAC3D,IAAI,CAAC,QAAQ,CAAC,EAAE;QAAE,OAAO,QAAQ,CAAC;IAClC,MAAM,EAAE,GAAG,QAAQ,CAAC,KAAK,CAAC;IAC1B,IAAI,CAAC;QACH,cAAc,CAAC,EAAE,EAAE,OAAO,CAAC,CAAC;QAC5B,kEAAkE;QAClE,mEAAmE;QACnE,wDAAwD;QACxD,MAAM,GAAG,GAAG,EAAE,CAAC,OAAO,CAAC,sCAAsC,CAAC,CAAC,GAAG,CAAC,gBAAgB,CAEtE,CAAC;QACd,IAAI,GAAG,EAAE,CAAC;YACR,IAAI,CAAC;gBACH,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,CAA2B,CAAC;gBACjE,IAAI,OAAO,IAAI,QAAQ,EAAE,CAAC;oBACxB,OAAO,QAAQ,CAAC,OAAO,CAAC,CAAC;oBACzB,EAAE,CAAC,OAAO,CACR,mGAAmG,CACpG,CAAC,GAAG,CAAC,gBAAgB,EAAE,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC,CAAC;gBACpD,CAAC;YACH,CAAC;YAAC,MAAM,CAAC;gBACP,iEAAiE;gBACjE,4BAA4B;YAC9B,CAAC;QACH,CAAC;QACD,OAAO,EAAE,CAAC,SAAS,CAAC,CAAC;IACvB,CAAC;YAAS,CAAC;QACT,EAAE,CAAC,KAAK,EAAE,CAAC;IACb,CAAC;AACH,CAAC;AAED,KAAK,UAAU,aAAa,CAAC,OAAe;IAC1C,IAAI,CAAC;QACH,MAAM,IAAI,CAAC,OAAO,CAAC,CAAC;QACpB,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;IAC1B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;IAC3B,CAAC;AACH,CAAC;AAED,yEAAyE;AACzE,4EAA4E;AAC5E,uEAAuE;AACvE,SAAS,eAAe,CAAC,SAAiB,EAAE,OAAe;IACzD,MAAM,IAAI,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC;IAChC,MAAM,GAAG,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC;IAC7B,MAAM,GAAG,GAAG,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;IAChC,IAAI,GAAG,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC;IAClC,IAAI,GAAG,CAAC,UAAU,CAAC,IAAI,CAAC;QAAE,OAAO,IAAI,CAAC;IACtC,4EAA4E;IAC5E,OAAO,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AACtD,CAAC;AAED,yEAAyE;AACzE,4EAA4E;AAC5E,2EAA2E;AAC3E,2EAA2E;AAC3E,qDAAqD;AACrD,SAAS,aAAa,CAAC,OAAe;IACpC,yEAAyE;IACzE,+CAA+C;IAC/C,IAAI,OAAO,CAAC,UAAU,CAAC,WAAW,CAAC,IAAI,OAAO,KAAK,UAAU;QAAE,OAAO,IAAI,CAAC;IAC3E,2DAA2D;IAC3D,IAAI,OAAO,CAAC,UAAU,CAAC,OAAO,CAAC,IAAI,OAAO,KAAK,MAAM;QAAE,OAAO,IAAI,CAAC;IACnE,yDAAyD;IACzD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IAC1C,IAAI,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,KAAK,KAAK,GAAG;QAAE,OAAO,IAAI,CAAC;IACxD,OAAO,KAAK,CAAC;AACf,CAAC;AAED,0EAA0E;AAC1E,2EAA2E;AAC3E,4EAA4E;AAC5E,gDAAgD;AAChD,SAAS,UAAU,CAAC,OAAe;IACjC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;AAC/C,CAAC;AAED,wEAAwE;AACxE,2EAA2E;AAC3E,4EAA4E;AAC5E,yBAAyB;AACzB,MAAM,UAAU,YAAY,CAAC,SAAiB,EAAE,OAAuB,EAAE;IACvE,MAAM,QAAQ,GAAG,cAAc,CAAC,IAAI,CAAC,CAAC;IACtC,MAAM,IAAI,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC;IAWhC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAmB,CAAC;IAE3C,qEAAqE;IACrE,oEAAoE;IACpE,0BAA0B;IAC1B,IAAI,OAAkB,CAAC;IACvB,IAAI,QAAQ,CAAC,cAAc,EAAE,CAAC;QAC5B,OAAO,GAAG,QAAQ,CAAC,cAAc,CAAC,IAAI,CAAC,CAAC;IAC1C,CAAC;SAAM,CAAC;QACN,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE;YAC7B,OAAO,EAAE,CAAC,CAAS,EAAE,EAAE;gBACrB,sEAAsE;gBACtE,uCAAuC;gBACvC,IAAI,CAAC,KAAK,IAAI;oBAAE,OAAO,KAAK,CAAC;gBAC7B,MAAM,GAAG,GAAG,eAAe,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;gBACrC,IAAI,GAAG,KAAK,IAAI;oBAAE,OAAO,KAAK,CAAC;gBAC/B,OAAO,aAAa,CAAC,GAAG,CAAC,CAAC;YAC5B,CAAC;YACD,aAAa,EAAE,IAAI,EAAE,2DAA2D;YAChF,UAAU,EAAE,IAAI;YAChB,cAAc,EAAE,KAAK;YACrB,gBAAgB,EAAE,KAAK,EAAE,0BAA0B;SACpD,CAAC,CAAC;IACL,CAAC;IAED,IAAI,MAAM,GAAG,KAAK,CAAC;IAEnB,wEAAwE;IACxE,wEAAwE;IACxE,uDAAuD;IACvD,KAAK,UAAU,QAAQ,CAAC,OAAe,EAAE,SAAuB;QAC9D,IAAI,MAAM;YAAE,OAAO;QAEnB,qEAAqE;QACrE,sEAAsE;QACtE,sEAAsE;QACtE,MAAM,WAAW,GAAG,gBAAgB,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;QACpD,IAAI,WAAW,CAAC,EAAE,IAAI,gBAAgB,CAAC,WAAW,CAAC,KAAK,CAAC,EAAE,CAAC;YAC1D,OAAO;QACT,CAAC;QAED,kEAAkE;QAClE,oEAAoE;QACpE,qEAAqE;QACrE,sEAAsE;QACtE,yEAAyE;QACzE,iEAAiE;QACjE,MAAM,MAAM,GAAG,cAAc,EAAE,CAAC;QA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package/dist/storage/index-db.d.ts

@@ -20,21 +20,34 @@ export interface IndexedChunk {
     path: string;
     chunkIndex: number;
     text: string;
+    contentHash: string;
     embedding: Float32Array | null;
 }
 export declare function indexDbPath(vaultRoot: string): string;
-export declare function openIndexDb(vaultRoot: string): Result<IndexDb, Error>;
+export declare function clearEmbeddingsVec(db: IndexDb): void;
+export declare function insertEmbeddingVec(db: IndexDb, contentHash: string, model: string, embedding: Float32Array): void;
+export declare function openIndexDb(vaultRoot: string, expectedVecDim?: number): Result<IndexDb, Error>;
 export declare function clearIndex(db: IndexDb): void;
 export declare function deleteDocument(db: IndexDb, path: string): void;
 export declare function embeddingToBlob(vec: Float32Array): Buffer;
 export declare function blobToEmbedding(blob: Buffer): Float32Array;
 export declare function insertDocument(db: IndexDb, doc: IndexedDocument): void;
-export declare function insertChunk(db: IndexDb, chunk: IndexedChunk): void;
+export interface ChunkRowInput {
+    path: string;
+    chunkIndex: number;
+    text: string;
+    contentHash: string;
+}
+export declare function insertChunkRow(db: IndexDb, chunk: ChunkRowInput): void;
+export declare function existingEmbeddingHashes(db: IndexDb, model: string, hashes: string[]): Set<string>;
+export declare function insertEmbedding(db: IndexDb, contentHash: string, model: string, embedding: Float32Array, createdAt: string, dim: number): void;
+export declare function gcOrphanedEmbeddings(db: IndexDb): number;
 export declare function setMeta(db: IndexDb, key: string, value: string): void;
 export declare function getAllDocuments(db: IndexDb): IndexedDocument[];
 export declare function getDocument(db: IndexDb, path: string): IndexedDocument | null;
-export declare function getAllChunks(db: IndexDb): IndexedChunk[];
-export declare function getChunksForPath(db: IndexDb, path: string): IndexedChunk[];
+export declare function getAllChunks(db: IndexDb, model: string, expectedDim?: number): IndexedChunk[];
+export declare function getChunksForPath(db: IndexDb, path: string, model: string, expectedDim?: number): IndexedChunk[];
 export declare function getMeta(db: IndexDb, key: string): string | null;
 export declare function documentCount(db: IndexDb): number;
+export declare function embeddingCount(db: IndexDb): number;
 //# sourceMappingURL=index-db.d.ts.map

package/dist/storage/index-db.d.ts.map

@@ -1 +1 @@
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package/dist/storage/index-db.js

@@ -2,25 +2,69 @@
 //
 // The index is a derived cache: it holds nothing the markdown files don't
 // already hold, so .daftari/index.db can be deleted and rebuilt at any time
-// (see search/reindex.ts). Two tables carry the search payload:
+// (see search/reindex.ts). Five tables carry the search payload:
 //
-//   documents — one row per markdown file: frontmatter fields, the full body,
-//               and the BM25 token list (JSON).
-//   chunks    — one row per embedded text chunk: the chunk text and its vector
-//               embedding (Float32 BLOB, or NULL when embedding was skipped).
+//   documents      — one row per markdown file: frontmatter fields, the full
+//                    body, and the (legacy) BM25 token list (JSON).
+//   chunks         — one row per embedded text chunk: the chunk text and a
+//                    content_hash (sha256 of the chunk text) that joins to the
+//                    embeddings table for the current model.
+//   embeddings     — one row per (content_hash, model) pair, with a `dim`
+//                    column recording the vector dimension. Content-addressed,
+//                    so identical chunk text shares one row across files and
+//                    across reindexes. The composite (content_hash, model)
+//                    primary key lets two providers' vectors (e.g. local-
+//                    minilm 384 + openai-3-small 1536) coexist for the same
+//                    chunk text — handy when switching providers without
+//                    losing the old cache. `dim` is defense-in-depth: callers
+//                    can detect a corrupt or cross-provider mix at read time,
+//                    even though the model id already scopes the join.
+//   documents_fts  — FTS5 virtual table (contentless link to `documents`).
+//                    Title, tags, and body tokens, ranked with BM25. Kept in
+//                    sync by AFTER INSERT / UPDATE / DELETE triggers on
+//                    `documents`, so writes never touch the virtual table
+//                    directly. Replaces the hand-rolled BM25 over the legacy
+//                    `documents.tokens` column.
+//   embeddings_vec — sqlite-vec `vec0` virtual table, an indexed mirror of
+//                    `embeddings` for vector queries. Rebuilt at the active
+//                    provider's dim — switching providers between server runs
+//                    triggers a drop-and-recreate (the durable `embeddings`
+//                    table is untouched). Population is the reindex path's
+//                    job; this file just exposes the schema.
 //
 // A small meta table records index-wide facts (embedding dimension, whether
-// vectors were built, when the index was last rebuilt).
+// vectors were built, when the index was last rebuilt, the dim that
+// `embeddings_vec` was created at).
 import { mkdirSync } from "node:fs";
 import { join } from "node:path";
 import Database from "better-sqlite3";
+import * as sqliteVec from "sqlite-vec";
 import { err, ok } from "../frontmatter/types.js";
-const SCHEMA_VERSION = "2";
+// Bumped 4 → 5 to add FTS5 (`documents_fts`) and sqlite-vec (`embeddings_vec`)
+// virtual tables for SQL-native search. The index is a derived cache so the
+// bump triggers a clean rebuild (see openIndexDb); no in-place migration.
+const SCHEMA_VERSION = "5";
+// Default dim used when openIndexDb is invoked without an explicit
+// `embeddings_vec` dim — e.g. legacy tests that don't go through the
+// reindex path. The vec table's column type is fixed at CREATE-TABLE time,
+// so any subsequent call with a different dim will rebuild the virtual
+// table. Set to the local-minilm dim so the common case (default provider,
+// no explicit dim) creates a usable table on the first open.
+const DEFAULT_VEC_DIM = 384;
+// Meta key that records the dim at which `embeddings_vec` was created. Used
+// on every open to decide whether to rebuild the virtual table (provider
+// switch). The durable `embeddings` cache is per-(model, dim) so it survives
+// the vec-table rebuild and a switch-back to the previous provider is all
+// cache hits.
+const VEC_DIM_META_KEY = "embeddings_vec_dim";
 // The .daftari control directory is excluded from vault listings, so the index
 // file lives there without ever being mistaken for vault content.
 export function indexDbPath(vaultRoot) {
     return join(vaultRoot, ".daftari", "index.db");
 }
+// Non-virtual schema. Virtual tables (`documents_fts`, `embeddings_vec`) are
+// created separately because their CREATE statements depend on runtime values
+// (the active provider's dim) and need the sqlite-vec extension loaded first.
 const SCHEMA = `
 CREATE TABLE IF NOT EXISTS documents (
   path          TEXT PRIMARY KEY,
@@ -38,22 +82,129 @@ CREATE TABLE IF NOT EXISTS documents (
   superseded_by TEXT
 );
 CREATE TABLE IF NOT EXISTS chunks (
-  path         TEXT NOT NULL,
-  chunk_index  INTEGER NOT NULL,
-  text         TEXT NOT NULL,
-  embedding    BLOB,
+  path          TEXT NOT NULL,
+  chunk_index   INTEGER NOT NULL,
+  text          TEXT NOT NULL,
+  content_hash  TEXT NOT NULL,
   PRIMARY KEY (path, chunk_index)
 );
+CREATE INDEX IF NOT EXISTS idx_chunks_content_hash ON chunks(content_hash);
+CREATE TABLE IF NOT EXISTS embeddings (
+  content_hash TEXT NOT NULL,
+  model        TEXT NOT NULL,
+  dim          INTEGER NOT NULL,
+  embedding    BLOB NOT NULL,
+  created_at   TEXT NOT NULL,
+  PRIMARY KEY (content_hash, model)
+);
 CREATE TABLE IF NOT EXISTS meta (
   key   TEXT PRIMARY KEY,
   value TEXT NOT NULL
 );
 `;
-export function openIndexDb(vaultRoot) {
+// FTS5 virtual table over the `documents` body + title + tags. The
+// `content='documents'` link is a "contentless" external-content FTS5
+// index — the virtual table stores tokens, not its own copy of the text,
+// so writes pay one storage cost, not two. AFTER INSERT/UPDATE/DELETE
+// triggers on `documents` keep the FTS index in sync so the write path
+// never touches the virtual table directly. Porter + unicode61 is the
+// stock English stemming pipeline; it lowercases, strips diacritics, and
+// folds plurals / -ing forms.
+const FTS_SCHEMA = `
+CREATE VIRTUAL TABLE IF NOT EXISTS documents_fts USING fts5(
+  title, tags, content_body,
+  content='documents',
+  content_rowid='rowid',
+  tokenize='porter unicode61'
+);
+CREATE TRIGGER IF NOT EXISTS documents_ai AFTER INSERT ON documents BEGIN
+  INSERT INTO documents_fts(rowid, title, tags, content_body)
+  VALUES (new.rowid, new.title, new.tags, new.content);
+END;
+CREATE TRIGGER IF NOT EXISTS documents_ad AFTER DELETE ON documents BEGIN
+  INSERT INTO documents_fts(documents_fts, rowid, title, tags, content_body)
+  VALUES('delete', old.rowid, old.title, old.tags, old.content);
+END;
+CREATE TRIGGER IF NOT EXISTS documents_au AFTER UPDATE ON documents BEGIN
+  INSERT INTO documents_fts(documents_fts, rowid, title, tags, content_body)
+  VALUES('delete', old.rowid, old.title, old.tags, old.content);
+  INSERT INTO documents_fts(rowid, title, tags, content_body)
+  VALUES (new.rowid, new.title, new.tags, new.content);
+END;
+`;
+// Loads the sqlite-vec loadable extension. The npm-distributed
+// `better-sqlite3` ships with extension loading enabled in current
+// versions, so this is normally a no-op success — but some custom builds
+// or distro packages strip the capability, and we want a clear,
+// actionable error in that case rather than a confusing later failure
+// when a query references `embeddings_vec`. Returns Result so the caller
+// (openIndexDb) can surface the message to the operator.
+function loadVecExtension(db) {
+    try {
+        sqliteVec.load(db);
+        return ok(undefined);
+    }
+    catch (e) {
+        const reason = e instanceof Error ? e.message : String(e);
+        return err(new Error(`cannot load sqlite-vec extension: ${reason}. ` +
+            "If this is the better-sqlite3 prebuilt without extension loading, " +
+            "rebuild it from source: `npm rebuild better-sqlite3 --build-from-source`."));
+    }
+}
+// Creates the sqlite-vec virtual table at the given dim, dropping any
+// existing copy first. `dim` is fixed at CREATE TABLE time for vec0, so a
+// provider switch (which changes the active dim) means dropping and
+// recreating; the durable `embeddings` cache survives, and the next reindex
+// repopulates `embeddings_vec` from it.
+function createVecTable(db, dim) {
+    if (!Number.isInteger(dim) || dim <= 0) {
+        throw new Error(`cannot create embeddings_vec at non-positive dim ${dim} — ` +
+            "the active embedding provider must declare a positive integer dim");
+    }
+    db.exec("DROP TABLE IF EXISTS embeddings_vec;");
+    db.exec(`CREATE VIRTUAL TABLE embeddings_vec USING vec0(
+       content_hash TEXT NOT NULL,
+       model        TEXT NOT NULL,
+       embedding    FLOAT[${dim}] distance_metric=cosine
+     );`);
+    setMeta(db, VEC_DIM_META_KEY, String(dim));
+}
+// Drops every row from `embeddings_vec`. Called by the reindex path when
+// it needs to repopulate the vec table from scratch (e.g. after a dim
+// rebuild). Cheaper and clearer than a per-row delete in the common case.
+export function clearEmbeddingsVec(db) {
+    db.exec("DELETE FROM embeddings_vec;");
+}
+// Inserts a vector row into the sqlite-vec mirror. Separate from
+// `insertEmbedding` because the durable cache and the vec index are two
+// stores — the cache survives a vec-table rebuild on provider switch.
+export function insertEmbeddingVec(db, contentHash, model, embedding) {
+    db.prepare("INSERT INTO embeddings_vec(content_hash, model, embedding) VALUES (?, ?, ?)").run(contentHash, model, embeddingToBlob(embedding));
+}
+// Deletes the vec-mirror rows for a single content_hash. Used by the
+// orphan gc pass so the vec index never carries vectors whose chunks are
+// gone.
+function deleteEmbeddingsVecForHash(db, contentHash) {
+    db.prepare("DELETE FROM embeddings_vec WHERE content_hash = ?").run(contentHash);
+}
+// `expectedVecDim` is the active embedding provider's dim. If the persisted
+// `embeddings_vec` was created at a different dim (or doesn't exist yet),
+// it is dropped and recreated at the expected dim — the durable `embeddings`
+// cache is untouched, so a switch back to the previous provider is all
+// cache hits. When omitted, falls back to `DEFAULT_VEC_DIM` (local-minilm).
+export function openIndexDb(vaultRoot, expectedVecDim) {
     try {
         mkdirSync(join(vaultRoot, ".daftari"), { recursive: true });
         const db = new Database(indexDbPath(vaultRoot));
         db.pragma("journal_mode = WAL");
+        // Load sqlite-vec BEFORE any CREATE VIRTUAL TABLE that uses `vec0` runs.
+        // A failure here is loud and actionable — the server refuses to start
+        // rather than silently falling back to brute-force cosine.
+        const loaded = loadVecExtension(db);
+        if (!loaded.ok) {
+            db.close();
+            return loaded;
+        }
         // Ensure the meta table exists before reading schema_version from it.
         db.exec(`CREATE TABLE IF NOT EXISTS meta (
       key   TEXT PRIMARY KEY,
@@ -61,9 +212,39 @@ export function openIndexDb(vaultRoot) {
     );`);
         const stored = getMeta(db, "schema_version");
         if (stored !== SCHEMA_VERSION) {
-            db.exec("DROP TABLE IF EXISTS documents; DROP TABLE IF EXISTS chunks;");
+            // Schema bump means a clean rebuild: every derived table is dropped and
+            // the freshness manifest is cleared so the next reindex repopulates
+            // everything. Trying to ALTER across this change would race column
+            // additions (3 → 4 added embeddings.dim) and virtual-table creations
+            // (4 → 5 added documents_fts + embeddings_vec) against existing rows;
+            // the markdown files are the source of truth and the index is cheap to
+            // regenerate.
+            db.exec("DROP TRIGGER IF EXISTS documents_ai;" +
+                "DROP TRIGGER IF EXISTS documents_ad;" +
+                "DROP TRIGGER IF EXISTS documents_au;" +
+                "DROP TABLE IF EXISTS documents_fts;" +
+                "DROP TABLE IF EXISTS embeddings_vec;" +
+                "DROP TABLE IF EXISTS documents;" +
+                "DROP TABLE IF EXISTS chunks;" +
+                "DROP TABLE IF EXISTS embeddings;");
+            db.prepare("DELETE FROM meta WHERE key = ?").run("vault_manifest");
+            db.prepare("DELETE FROM meta WHERE key = ?").run(VEC_DIM_META_KEY);
         }
         db.exec(SCHEMA);
+        db.exec(FTS_SCHEMA);
+        // Decide which dim to create `embeddings_vec` at: caller's expected dim,
+        // or DEFAULT_VEC_DIM if the caller opted out. If the persisted dim
+        // matches AND the virtual table already exists, we leave it alone —
+        // recreating would drop all the indexed vectors for no reason.
+        const targetDim = expectedVecDim ?? DEFAULT_VEC_DIM;
+        const persistedDimRaw = getMeta(db, VEC_DIM_META_KEY);
+        const persistedDim = persistedDimRaw ? Number.parseInt(persistedDimRaw, 10) : null;
+        const vecTableExists = db
+            .prepare("SELECT COUNT(*) AS n FROM sqlite_master WHERE type='table' AND name=?")
+            .get("embeddings_vec").n > 0;
+        if (!vecTableExists || persistedDim !== targetDim) {
+            createVecTable(db, targetDim);
+        }
         setMeta(db, "schema_version", SCHEMA_VERSION);
         return ok(db);
     }
@@ -73,7 +254,9 @@ export function openIndexDb(vaultRoot) {
     }
 }
 // Drops every indexed row. Called at the start of a rebuild so a reindex never
-// leaves rows for files that have since been deleted.
+// leaves rows for files that have since been deleted. Embeddings are NOT
+// cleared here — they are content-addressed and a subsequent gc pass deletes
+// only the orphaned ones, preserving the cache across reindexes.
 export function clearIndex(db) {
     db.exec("DELETE FROM documents; DELETE FROM chunks;");
 }
@@ -97,14 +280,93 @@ export function blobToEmbedding(blob) {
 }
 // --- writes ----------------------------------------------------------------
 export function insertDocument(db, doc) {
-    db.prepare(`INSERT OR REPLACE INTO documents
+    // ON CONFLICT(path) DO UPDATE (rather than INSERT OR REPLACE) is required
+    // so the AFTER UPDATE trigger on `documents` fires and keeps
+    // `documents_fts` in sync. SQLite's OR REPLACE conflict resolution does
+    // NOT fire DELETE/UPDATE triggers for the conflicting row — using it
+    // would leave the FTS5 index pointing at stale terms after every
+    // document overwrite.
+    db.prepare(`INSERT INTO documents
        (path, title, collection, domain, status, confidence, updated, tags, content, tokens,
         ttl_days, created, superseded_by)
-     VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`).run(doc.path, doc.title, doc.collection, doc.domain, doc.status, doc.confidence, doc.updated, JSON.stringify(doc.tags), doc.content, JSON.stringify(doc.tokens), doc.ttlDays, doc.created, doc.supersededBy);
+     VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+     ON CONFLICT(path) DO UPDATE SET
+       title         = excluded.title,
+       collection    = excluded.collection,
+       domain        = excluded.domain,
+       status        = excluded.status,
+       confidence    = excluded.confidence,
+       updated       = excluded.updated,
+       tags          = excluded.tags,
+       content       = excluded.content,
+       tokens        = excluded.tokens,
+       ttl_days      = excluded.ttl_days,
+       created       = excluded.created,
+       superseded_by = excluded.superseded_by`).run(doc.path, doc.title, doc.collection, doc.domain, doc.status, doc.confidence, doc.updated, JSON.stringify(doc.tags), doc.content, JSON.stringify(doc.tokens), doc.ttlDays, doc.created, doc.supersededBy);
 }
-export function insertChunk(db, chunk) {
-    db.prepare(`INSERT OR REPLACE INTO chunks (path, chunk_index, text, embedding)
-     VALUES (?, ?, ?, ?)`).run(chunk.path, chunk.chunkIndex, chunk.text, chunk.embedding ? embeddingToBlob(chunk.embedding) : null);
+export function insertChunkRow(db, chunk) {
+    db.prepare(`INSERT OR REPLACE INTO chunks (path, chunk_index, text, content_hash)
+     VALUES (?, ?, ?, ?)`).run(chunk.path, chunk.chunkIndex, chunk.text, chunk.contentHash);
+}
+// Returns the set of content_hash values that already have a row for `model`
+// in the embeddings cache. Used by the reindex pass to skip re-embedding any
+// chunk whose text hash is already known.
+export function existingEmbeddingHashes(db, model, hashes) {
+    if (hashes.length === 0)
+        return new Set();
+    // SQLite has a finite SQL variable limit (default 999), so chunk the IN()
+    // list to stay well under it.
+    const found = new Set();
+    const BATCH = 500;
+    for (let start = 0; start < hashes.length; start += BATCH) {
+        const slice = hashes.slice(start, start + BATCH);
+        const placeholders = slice.map(() => "?").join(",");
+        const rows = db
+            .prepare(`SELECT content_hash FROM embeddings WHERE model = ? AND content_hash IN (${placeholders})`)
+            .all(model, ...slice);
+        for (const r of rows)
+            found.add(r.content_hash);
+    }
+    return found;
+}
+// Persists a vector under (content_hash, model). `dim` is asserted to match
+// `embedding.length` — a mismatch would write a corrupt row that the cosine
+// math reads back as silent garbage. The store stays oblivious to which
+// provider produced the vector; callers pass the provider's `id` and `dim`.
+export function insertEmbedding(db, contentHash, model, embedding, createdAt, dim) {
+    if (embedding.length !== dim) {
+        throw new Error(`embedding length ${embedding.length} does not match declared dim ${dim} ` +
+            `for model '${model}' — refusing to write a corrupt cache row`);
+    }
+    db.prepare(`INSERT OR REPLACE INTO embeddings (content_hash, model, dim, embedding, created_at)
+     VALUES (?, ?, ?, ?, ?)`).run(contentHash, model, dim, embeddingToBlob(embedding), createdAt);
+}
+// Deletes every embeddings row whose content_hash is referenced by no chunks
+// row, and removes the matching rows from the sqlite-vec mirror. Called at
+// the end of a reindex to reap entries for chunks that no longer exist
+// anywhere in the vault. Returns the number of `embeddings` rows deleted —
+// the vec-mirror counts piggy-back and are not reported separately.
+export function gcOrphanedEmbeddings(db) {
+    // Collect the orphan hashes first so we can drop them from both stores in
+    // one pass. The `embeddings_vec` virtual table doesn't support correlated
+    // subqueries on its meta columns reliably, so we go through prepared
+    // deletes by hash.
+    const orphans = db
+        .prepare(`SELECT content_hash
+         FROM embeddings
+        WHERE content_hash NOT IN (SELECT content_hash FROM chunks)`)
+        .all();
+    if (orphans.length === 0)
+        return 0;
+    const drop = db.transaction(() => {
+        const dropEmb = db.prepare("DELETE FROM embeddings WHERE content_hash = ?");
+        for (const { content_hash } of orphans) {
+            dropEmb.run(content_hash);
+            deleteEmbeddingsVecForHash(db, content_hash);
+        }
+    });
+    drop();
+    return orphans.length;
 }
 export function setMeta(db, key, value) {
     db.prepare("INSERT OR REPLACE INTO meta (key, value) VALUES (?, ?)").run(key, value);
@@ -134,23 +396,58 @@ export function getDocument(db, path) {
     const row = db.prepare("SELECT * FROM documents WHERE path = ?").get(path);
     return row ? rowToDocument(row) : null;
 }
-function rowToChunk(row) {
+// Converts a join row to the public chunk shape. The embedding is read iff
+// its stored dim matches the active provider's expected dim — a mismatch
+// would only happen if a row was written under different metadata than its
+// blob (a bug or hand-edit), and we'd rather skip it than score with garbage.
+// `expectedDim` may be 0 to opt out of the check (legacy callers in tests).
+function rowToChunk(row, expectedDim) {
+    let embedding = null;
+    if (row.embedding) {
+        const blobOk = expectedDim === 0 || row.embedding.length === expectedDim * 4;
+        const dimOk = expectedDim === 0 || row.dim === expectedDim;
+        if (blobOk && dimOk) {
+            embedding = blobToEmbedding(row.embedding);
+        }
+        // Silent skip — vector ranking just falls back as if this row had no
+        // embedding for the join. A noisy log here would be invoked per-chunk on
+        // a long mismatch; the conditions are bugs surfaced by tests instead.
+    }
     return {
         path: row.path,
         chunkIndex: row.chunk_index,
         text: row.text,
-        embedding: row.embedding ? blobToEmbedding(row.embedding) : null,
+        contentHash: row.content_hash,
+        embedding,
     };
 }
-export function getAllChunks(db) {
-    const rows = db.prepare("SELECT * FROM chunks ORDER BY path, chunk_index").all();
-    return rows.map(rowToChunk);
+// Reads every chunk LEFT JOINed against the embeddings cache, filtered to
+// `model`. A chunk whose content_hash has no embeddings row for this model
+// (e.g. the model was unavailable during reindex) comes back with embedding =
+// null and the vector ranker simply skips it, matching the old NULL-blob
+// behaviour. `expectedDim` is a defense-in-depth check: any row whose stored
+// dim or blob byte length disagrees is treated as missing, so a corrupt or
+// cross-provider mix can't poison cosine math.
+export function getAllChunks(db, model, expectedDim = 0) {
+    const rows = db
+        .prepare(`SELECT c.path, c.chunk_index, c.text, c.content_hash, e.embedding, e.dim
+         FROM chunks c
+         LEFT JOIN embeddings e
+           ON e.content_hash = c.content_hash AND e.model = ?
+        ORDER BY c.path, c.chunk_index`)
+        .all(model);
+    return rows.map((row) => rowToChunk(row, expectedDim));
 }
-export function getChunksForPath(db, path) {
+export function getChunksForPath(db, path, model, expectedDim = 0) {
     const rows = db
-        .prepare("SELECT * FROM chunks WHERE path = ? ORDER BY chunk_index")
-        .all(path);
-    return rows.map(rowToChunk);
+        .prepare(`SELECT c.path, c.chunk_index, c.text, c.content_hash, e.embedding, e.dim
+         FROM chunks c
+         LEFT JOIN embeddings e
+           ON e.content_hash = c.content_hash AND e.model = ?
+        WHERE c.path = ?
+        ORDER BY c.chunk_index`)
+        .all(model, path);
+    return rows.map((row) => rowToChunk(row, expectedDim));
 }
 export function getMeta(db, key) {
     const row = db.prepare("SELECT value FROM meta WHERE key = ?").get(key);
@@ -160,4 +457,8 @@ export function documentCount(db) {
     const row = db.prepare("SELECT COUNT(*) AS n FROM documents").get();
     return row.n;
 }
+export function embeddingCount(db) {
+    const row = db.prepare("SELECT COUNT(*) AS n FROM embeddings").get();
+    return row.n;
+}
 //# sourceMappingURL=index-db.js.map

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package/dist/tools/search.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../../src/tools/search.ts"],"names":[],"mappings":"AAQA,OAAO,EAAE,KAAK,aAAa,EAAW,MAAM,mBAAmB,CAAC;AAChE,OAAO,EAAW,KAAK,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,EAEL,KAAK,kBAAkB,EAGvB,KAAK,mBAAmB,EAEzB,MAAM,qBAAqB,CAAC;AAQ7B,OAAO,EAAE,KAAK,aAAa,EAAgB,MAAM,sBAAsB,CAAC;AAGxE,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,WAAW,CAAC;AA0EhD,wBAAsB,WAAW,CAC/B,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,kBAAkB,EAAE,KAAK,CAAC,CAAC,CA2B5C;AAMD,wBAAsB,kBAAkB,CACtC,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,mBAAmB,EAAE,KAAK,CAAC,CAAC,CA2B7C;AAMD,MAAM,WAAW,kBAAmB,SAAQ,aAAa;IACvD,KAAK,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,YAAY,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,kBAAkB,EAAE,KAAK,CAAC,CAAC,CAahG;AAgBD,eAAO,MAAM,WAAW,EAAE,cAAc,EA2DvC,CAAC"}

package/dist/tools/search.js

@@ -10,7 +10,15 @@ import { err, ok } from "../frontmatter/types.js";
 import { DEFAULT_WEIGHTS, hybridSearch, relatedSearch, } from "../search/hybrid.js";
 import { getIndexStatus, indexingBusyMessage, markIndexError, markIndexing, markIndexReady, } from "../search/index-state.js";
 import { reindexVault } from "../search/reindex.js";
+import { getProvider } from "../search/vector.js";
 import { documentCount, openIndexDb } from "../storage/index-db.js";
+// All tool-side opens pass the active provider's dim so the sqlite-vec
+// table matches the embeddings the search will query. A read-only tool
+// that opens after a provider switch would otherwise face a vec table
+// sized for the *previous* provider's vectors.
+function openIndexForActiveProvider(vaultRoot) {
+    return openIndexDb(vaultRoot, getProvider().dim);
+}
 // Gate every index-backed tool on the current indexing state.
 //
 // - "indexing": refuse with a progress-bearing message. The server is still
@@ -30,7 +38,7 @@ async function ensureIndexReady(vaultRoot) {
     if (status.status === "error") {
         return err(new Error(`vault index is in error state: ${status.error ?? "unknown"}`));
     }
-    const dbResult = openIndexDb(vaultRoot);
+    const dbResult = openIndexForActiveProvider(vaultRoot);
     if (!dbResult.ok)
         return dbResult;
     const empty = documentCount(dbResult.value) === 0;
@@ -81,7 +89,7 @@ export async function vaultSearch(vaultRoot, args, access) {
     const ready = await ensureIndexReady(vaultRoot);
     if (!ready.ok)
         return ready;
-    const dbResult = openIndexDb(vaultRoot);
+    const dbResult = openIndexForActiveProvider(vaultRoot);
     if (!dbResult.ok)
         return dbResult;
     const db = dbResult.value;
@@ -114,7 +122,7 @@ export async function vaultSearchRelated(vaultRoot, args, access) {
     const ready = await ensureIndexReady(vaultRoot);
     if (!ready.ok)
         return ready;
-    const dbResult = openIndexDb(vaultRoot);
+    const dbResult = openIndexForActiveProvider(vaultRoot);
     if (!dbResult.ok)
         return dbResult;
     const db = dbResult.value;

package/dist/tools/search.js.map

@@ -1 +1 @@
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