daftari 1.7.1 → 1.9.0

package/dist/search/providers/openai-3-small.js

@@ -0,0 +1,174 @@
+// openai-3-small — OpenAI `text-embedding-3-small` via the public REST API.
+// 1536 dims. Trades local CPU + cold-start latency for paid network calls;
+// the embeddings cache makes the cost a one-time event per chunk text.
+//
+// Trust model: the vault owner sets OPENAI_API_KEY in the environment of the
+// MCP server process. The key is never read from config files or logged.
+// Missing key is a hard config error (see config loader) so a "paid" provider
+// can't silently fall back to free.
+//
+// Transport: native `fetch` (Node 20+ ships it globally). We deliberately
+// don't depend on the `openai` SDK — a 30-line typed wrapper avoids
+// dependency churn and a giant chain of transitive deps for what's a single
+// HTTP endpoint.
+//
+// Batching: 96 inputs per request. OpenAI's documented max is 2048 but
+// smaller batches keep the retry blast radius small (one batch failing
+// doesn't lose 2000 vectors' worth of work) and let onProgress fire often
+// enough to make a multi-thousand-chunk reindex visibly alive.
+//
+// Retries: exponential backoff on 429 / 5xx, max 3 retries. A definitive
+// failure (4xx other than 429, or a 4th attempt failing) returns Result.err;
+// callers degrade to BM25-only. We never throw from embed().
+import { err, ok } from "../../frontmatter/types.js";
+export const OPENAI_3_SMALL_ID = "openai-3-small";
+export const OPENAI_3_SMALL_DIM = 1536;
+const OPENAI_MODEL = "text-embedding-3-small";
+const OPENAI_URL = "https://api.openai.com/v1/embeddings";
+// Per-request batch size. OpenAI accepts up to 2048; we pick smaller so a
+// transient 5xx is cheap to retry and progress reporting feels responsive.
+const BATCH_SIZE = 96;
+// Retry budget. 3 retries with exponential backoff covers the typical 429 /
+// 5xx blip without making a hard failure feel like an indefinite hang.
+const MAX_RETRIES = 3;
+const BASE_BACKOFF_MS = 500;
+function isRetryableStatus(status) {
+    return status === 429 || status >= 500;
+}
+// Sleep with backoff. Exposed as a parameter so tests can stub it without
+// waiting real wall time. The first retry waits BASE_BACKOFF_MS, the second
+// 2x, the third 4x — total worst-case ~3.5s before giving up.
+async function delay(ms) {
+    return new Promise((resolve) => setTimeout(resolve, ms));
+}
+// Normalise a vector to unit length in place. OpenAI's text-embedding-3-small
+// returns L2-normalized vectors by default, so this is a defense-in-depth
+// no-op for the happy path. We still do it because cosine similarity is
+// stable iff inputs are normalized, and "the API silently returns un-
+// normalized vectors" is exactly the class of upstream change we'd rather
+// not be caught by.
+function l2Normalize(vec) {
+    let norm = 0;
+    for (let i = 0; i < vec.length; i++) {
+        const x = vec[i];
+        norm += x * x;
+    }
+    if (norm === 0)
+        return vec;
+    const inv = 1 / Math.sqrt(norm);
+    for (let i = 0; i < vec.length; i++) {
+        vec[i] = vec[i] * inv;
+    }
+    return vec;
+}
+// One HTTP call to /v1/embeddings for a single batch. Retries on 429/5xx
+// with exponential backoff; surfaces a definitive failure as Result.err.
+async function embedBatch(apiKey, inputs) {
+    let attempt = 0;
+    let lastError = "unknown";
+    while (attempt <= MAX_RETRIES) {
+        let response;
+        try {
+            response = await fetch(OPENAI_URL, {
+                method: "POST",
+                headers: {
+                    "content-type": "application/json",
+                    authorization: `Bearer ${apiKey}`,
+                },
+                body: JSON.stringify({ input: inputs, model: OPENAI_MODEL }),
+            });
+        }
+        catch (e) {
+            // Network-level failure (DNS, connection reset). Retry like a 5xx.
+            lastError = e instanceof Error ? e.message : String(e);
+            if (attempt < MAX_RETRIES) {
+                await delay(BASE_BACKOFF_MS * 2 ** attempt);
+                attempt += 1;
+                continue;
+            }
+            return err(new Error(`openai embedding request failed: ${lastError}`));
+        }
+        if (response.ok) {
+            let parsed;
+            try {
+                parsed = (await response.json());
+            }
+            catch (e) {
+                const reason = e instanceof Error ? e.message : String(e);
+                return err(new Error(`openai embedding response not JSON: ${reason}`));
+            }
+            if (!parsed.data || parsed.data.length !== inputs.length) {
+                return err(new Error(`openai embedding response had ${parsed.data?.length ?? 0} vectors ` +
+                    `for ${inputs.length} inputs`));
+            }
+            const vectors = [];
+            for (const item of parsed.data) {
+                if (!Array.isArray(item.embedding) || item.embedding.length !== OPENAI_3_SMALL_DIM) {
+                    return err(new Error(`openai returned vector of dim ${item.embedding?.length ?? 0}, ` +
+                        `expected ${OPENAI_3_SMALL_DIM}`));
+                }
+                const vec = new Float32Array(item.embedding);
+                vectors.push(l2Normalize(vec));
+            }
+            return ok(vectors);
+        }
+        // Read the body for diagnostics; ignore body-read failures because the
+        // status code is the load-bearing signal.
+        let body = "";
+        try {
+            body = await response.text();
+        }
+        catch {
+            // ignore
+        }
+        lastError = `${response.status} ${response.statusText} ${body}`.trim();
+        if (!isRetryableStatus(response.status) || attempt >= MAX_RETRIES) {
+            return err(new Error(`openai embedding request failed: ${lastError}`));
+        }
+        await delay(BASE_BACKOFF_MS * 2 ** attempt);
+        attempt += 1;
+    }
+    return err(new Error(`openai embedding request failed: ${lastError}`));
+}
+// Factory: takes the API key explicitly so the provider object is pure data
+// once constructed. The config loader validates the env var presence and
+// passes the value here; that way a missing key surfaces at config load,
+// not at first embed.
+export function makeOpenAi3SmallProvider(apiKey) {
+    if (!apiKey) {
+        throw new Error("makeOpenAi3SmallProvider: empty apiKey");
+    }
+    return {
+        id: OPENAI_3_SMALL_ID,
+        dim: OPENAI_3_SMALL_DIM,
+        // Stateless HTTP — no warm-up cost. Returning ok keeps the warm path
+        // uniform across providers so the server's startup wiring doesn't need
+        // to special-case the provider.
+        async warm() {
+            return ok(undefined);
+        },
+        async embed(texts, onProgress) {
+            if (texts.length === 0)
+                return ok([]);
+            const vectors = [];
+            for (let start = 0; start < texts.length; start += BATCH_SIZE) {
+                const batch = texts.slice(start, start + BATCH_SIZE);
+                const batchResult = await embedBatch(apiKey, batch);
+                if (!batchResult.ok)
+                    return batchResult;
+                for (const v of batchResult.value)
+                    vectors.push(v);
+                if (onProgress) {
+                    try {
+                        onProgress(vectors.length, texts.length);
+                    }
+                    catch {
+                        // best-effort: a broken reporter must not stop the embed.
+                    }
+                }
+            }
+            return ok(vectors);
+        },
+    };
+}
+//# sourceMappingURL=openai-3-small.js.map

package/dist/search/providers/openai-3-small.js.map

@@ -0,0 +1 @@
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package/dist/search/reindex.d.ts

@@ -6,6 +6,9 @@ export interface ReindexResult {
     vectorEnabled: boolean;
     skipped: string[];
     indexedAt: string;
+    embeddedCount: number;
+    cacheHits: number;
+    orphansRemoved: number;
 }
 export interface ReindexOptions {
     onProgress?: (done: number, total: number) => void;

package/dist/search/reindex.d.ts.map

@@ -1 +1 @@
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package/dist/search/reindex.js

@@ -4,17 +4,55 @@
 // from scratch — there is no incremental update path to drift out of sync.
 // Called on server start and by the vault_reindex tool / --reindex CLI flag.
 //
-// Embedding is best-effort: every chunk across the whole vault is embedded,
-// in fixed-size sub-batches so peak memory stays flat as the vault grows. If
-// the model is unavailable the documents (and their BM25 tokens) still index;
-// only the vector column is left NULL and vectorEnabled is false.
+// Embedding is content-addressed: each chunk's text is hashed (sha256), and
+// the embeddings table is keyed by (content_hash, model). A reindex hashes
+// every chunk, asks the cache which (hash, model) pairs already exist, and
+// only embeds the misses. Edits to one file re-embed that file's changed
+// chunks; renames, moved paragraphs, and identical text in two files all
+// hit the cache and embed zero. Orphaned cache rows (chunks that no longer
+// reference them) are reaped at the end of the pass.
+//
+// If the model is unavailable the documents (and their BM25 tokens) still
+// index; chunks are written with their content_hash but no embedding row is
+// inserted, so the join in vector.ts comes back null and search degrades to
+// lexical-only.
 import { stat } from "node:fs/promises";
 import { parseDocument } from "../frontmatter/parser.js";
 import { err, ok } from "../frontmatter/types.js";
-import { clearIndex, deleteDocument, documentCount, getMeta, insertChunk, insertDocument, openIndexDb, setMeta, } from "../storage/index-db.js";
+import { clearEmbeddingsVec, clearIndex, deleteDocument, documentCount, existingEmbeddingHashes, gcOrphanedEmbeddings, getMeta, insertChunkRow, insertDocument, insertEmbedding, insertEmbeddingVec, openIndexDb, setMeta, } from "../storage/index-db.js";
 import { listFiles, readFile, resolveVaultPath } from "../storage/local.js";
+import { sha256Hex } from "../utils/hash.js";
 import { tokenize } from "./bm25.js";
-import { chunkText, EMBEDDING_DIM, embed } from "./vector.js";
+import { chunkText, embed, getProvider } from "./vector.js";
+// Opens the index DB with the active embedding provider's dim, so the
+// sqlite-vec virtual table is created (or rebuilt) at the right
+// dimensionality. Every reindex / index-document path opens the DB this
+// way; a caller that doesn't care about vectors (a freshness probe,
+// say) can fall back to `openIndexDb(vault)` which uses a default dim.
+function openIndexForActiveProvider(vaultRoot) {
+    return openIndexDb(vaultRoot, getProvider().dim);
+}
+// Repopulates the sqlite-vec mirror from the durable `embeddings` cache
+// for the given model. Called at the end of every full reindex so the vec
+// table always reflects the current vault. The previous mirror contents
+// are dropped wholesale — simpler and faster than a diff for the sizes
+// this index reaches in practice.
+function rebuildEmbeddingsVec(db, modelId) {
+    const rebuild = db.transaction(() => {
+        clearEmbeddingsVec(db);
+        const rows = db
+            .prepare(`SELECT e.content_hash AS content_hash, e.embedding AS embedding
+           FROM embeddings AS e
+          WHERE e.model = ?
+            AND e.content_hash IN (SELECT content_hash FROM chunks)`)
+            .all(modelId);
+        const insert = db.prepare("INSERT INTO embeddings_vec(content_hash, model, embedding) VALUES (?, ?, ?)");
+        for (const row of rows) {
+            insert.run(row.content_hash, modelId, row.embedding);
+        }
+    });
+    rebuild();
+}
 // Manifest key in the meta table: JSON object mapping vault-relative path to
 // mtime in ms. Written at the end of a successful reindex and updated by
 // indexDocument after each incremental write, so a startup freshness check
@@ -75,7 +113,7 @@ function manifestsMatch(a, b) {
 // matches the stored value. Used by `main()` to skip a 20+ minute re-embed
 // pass on every restart of a vault that hasn't changed.
 export async function isIndexFresh(vaultRoot) {
-    const dbResult = openIndexDb(vaultRoot);
+    const dbResult = openIndexForActiveProvider(vaultRoot);
     if (!dbResult.ok)
         return false;
     const db = dbResult.value;
@@ -112,6 +150,8 @@ async function stageOne(vaultRoot, relPath) {
     // BM25 indexes title, tags, and body together so a title- or tag-only
     // match still ranks.
     const tokens = tokenize(`${fm.title} ${fm.tags.join(" ")} ${body}`);
+    const chunks = chunkText(body);
+    const hashes = chunks.map((t) => sha256Hex(t));
     return {
         doc: {
             path: relPath,
@@ -128,7 +168,8 @@ async function stageOne(vaultRoot, relPath) {
             created: fm.created,
             supersededBy: fm.superseded_by,
         },
-        chunks: chunkText(body),
+        chunks,
+        hashes,
     };
 }
 // Reads and parses every markdown file into the shape the index needs. A file
@@ -149,21 +190,23 @@ async function stageDocuments(vaultRoot) {
     }
     return ok({ staged, skipped });
 }
-function writeIndex(db, staged, embeddings) {
+// Inserts the chunk rows in a single transaction. Embeddings are persisted by
+// the caller (with a model identifier) so the chunk write stays oblivious to
+// which model produced the vectors.
+function writeChunkRows(db, staged) {
     let chunkCount = 0;
-    let cursor = 0;
     const write = db.transaction(() => {
         clearIndex(db);
-        for (const { doc, chunks } of staged) {
+        for (const { doc, chunks, hashes } of staged) {
             insertDocument(db, doc);
             chunks.forEach((text, chunkIndex) => {
-                insertChunk(db, {
+                const row = {
                     path: doc.path,
                     chunkIndex,
                     text,
-                    embedding: embeddings[cursor] ?? null,
-                });
-                cursor += 1;
+                    contentHash: hashes[chunkIndex] ?? "",
+                };
+                insertChunkRow(db, row);
                 chunkCount += 1;
             });
         }
@@ -176,25 +219,90 @@ export async function reindexVault(vaultRoot, opts = {}) {
     if (!staging.ok)
         return staging;
     const { staged, skipped } = staging.value;
-    // One flat list of every chunk's text; embed() processes it in sub-batches.
-    const allChunkTexts = [];
-    for (const s of staged)
-        allChunkTexts.push(...s.chunks);
-    const embedResult = await embed(allChunkTexts, opts.onProgress);
-    const vectorEnabled = embedResult.ok;
-    const embeddings = embedResult.ok
-        ? embedResult.value
-        : allChunkTexts.map(() => null);
-    const dbResult = openIndexDb(vaultRoot);
+    // Open the index first so we can ask the embeddings cache which (hash,
+    // model) pairs already exist before deciding what to embed. Pass the
+    // active provider's dim so the sqlite-vec mirror is sized correctly
+    // (rebuilt if a previous reindex used a different provider).
+    const dbResult = openIndexForActiveProvider(vaultRoot);
     if (!dbResult.ok)
         return dbResult;
     const db = dbResult.value;
     const indexedAt = new Date().toISOString();
     try {
-        const chunkCount = writeIndex(db, staged, embeddings);
+        // Flatten every chunk's text + hash so we can dedupe and query the cache
+        // in one shot. A single hash may appear in multiple files (or repeatedly
+        // in one file) — embed it once.
+        const allHashes = [];
+        const allTexts = [];
+        for (const s of staged) {
+            for (let i = 0; i < s.chunks.length; i++) {
+                const h = s.hashes[i] ?? "";
+                const t = s.chunks[i] ?? "";
+                allHashes.push(h);
+                allTexts.push(t);
+            }
+        }
+        const provider = getProvider();
+        const cached = existingEmbeddingHashes(db, provider.id, allHashes);
+        // Build the deduped miss list. Each unique missing hash gets embedded
+        // exactly once; identical chunk text in multiple places shares the row.
+        const missTextByHash = new Map();
+        for (let i = 0; i < allHashes.length; i++) {
+            const h = allHashes[i] ?? "";
+            if (cached.has(h))
+                continue;
+            if (missTextByHash.has(h))
+                continue;
+            missTextByHash.set(h, allTexts[i] ?? "");
+        }
+        const missHashes = [...missTextByHash.keys()];
+        const missTexts = missHashes.map((h) => missTextByHash.get(h) ?? "");
+        const totalChunks = allHashes.length;
+        const cacheHits = totalChunks - allHashes.filter((h) => !cached.has(h)).length;
+        let vectorEnabled = true;
+        if (missTexts.length > 0) {
+            const embedResult = await embed(missTexts, opts.onProgress);
+            if (embedResult.ok) {
+                const writeEmbeds = db.transaction(() => {
+                    for (let i = 0; i < missHashes.length; i++) {
+                        const h = missHashes[i] ?? "";
+                        const vec = embedResult.value[i];
+                        if (!vec)
+                            continue;
+                        insertEmbedding(db, h, provider.id, vec, indexedAt, provider.dim);
+                    }
+                });
+                writeEmbeds();
+            }
+            else {
+                // Model unavailable. We still want documents + chunk rows so BM25
+                // works; vector ranking simply degrades to nothing for this reindex.
+                vectorEnabled = false;
+            }
+        }
+        else if (totalChunks === 0) {
+            // No chunks at all (empty vault). Treat as vectorEnabled=true by
+            // convention — there is nothing to embed but also nothing failed.
+            vectorEnabled = true;
+        }
+        else {
+            // Everything was cached. Vector ranking has data already, so the
+            // reindex did not need to load the model — still vector-enabled.
+            vectorEnabled = true;
+        }
+        const chunkCount = writeChunkRows(db, staged);
+        const orphansRemoved = gcOrphanedEmbeddings(db);
+        // Rebuild the sqlite-vec mirror from the durable `embeddings` cache.
+        // The cache is per-(model, content_hash) and is the source of truth;
+        // the mirror is a SQL-queryable index of it. We rebuild rather than
+        // diff because (a) it's small (one row per active-model chunk) and
+        // (b) a vec-table rebuild on provider switch lands here with an empty
+        // table, so we need a full repopulation anyway.
+        rebuildEmbeddingsVec(db, provider.id);
         setMeta(db, "indexed_at", indexedAt);
         setMeta(db, "vector_enabled", String(vectorEnabled));
-        setMeta(db, "embedding_dim", String(EMBEDDING_DIM));
+        setMeta(db, "embedding_dim", String(provider.dim));
+        setMeta(db, "embedding_model", provider.id);
         // Persist a freshness manifest so the next startup can skip this whole
         // pass when nothing on disk has changed.
         const manifest = await buildManifest(vaultRoot);
@@ -206,6 +314,9 @@ export async function reindexVault(vaultRoot, opts = {}) {
             vectorEnabled,
             skipped,
             indexedAt,
+            embeddedCount: missHashes.length,
+            cacheHits,
+            orphansRemoved,
         });
     }
     catch (e) {
@@ -220,10 +331,11 @@ export async function reindexVault(vaultRoot, opts = {}) {
 //
 // If the index has never been built it falls back to a full reindex, so the
 // first write to a fresh vault still produces a complete index rather than a
-// one-document one. Otherwise it re-stages just `relPath`, evicts its stale
-// rows, and re-inserts — embedding only that document's chunks.
+// one-document one. Otherwise it re-stages just `relPath`, hashes its chunks,
+// embeds only those whose (hash, model) pair is not already in the embeddings
+// cache, evicts the document's stale chunk rows, and re-inserts.
 export async function indexDocument(vaultRoot, relPath) {
-    const dbCheck = openIndexDb(vaultRoot);
+    const dbCheck = openIndexForActiveProvider(vaultRoot);
     if (!dbCheck.ok)
         return dbCheck;
     const indexEmpty = documentCount(dbCheck.value) === 0;
@@ -241,28 +353,66 @@ export async function indexDocument(vaultRoot, relPath) {
     if (!staged) {
         return err(new Error(`cannot index document: ${relPath}`));
     }
-    const { doc, chunks } = staged;
-    const embedResult = await embed(chunks);
-    const vectorEnabled = embedResult.ok;
-    const embeddings = embedResult.ok
-        ? embedResult.value
-        : chunks.map(() => null);
-    const dbResult = openIndexDb(vaultRoot);
+    const { doc, chunks, hashes } = staged;
+    const dbResult = openIndexForActiveProvider(vaultRoot);
     if (!dbResult.ok)
         return dbResult;
     const db = dbResult.value;
+    const createdAt = new Date().toISOString();
     try {
+        const provider = getProvider();
+        const cached = existingEmbeddingHashes(db, provider.id, hashes);
+        const missTextByHash = new Map();
+        for (let i = 0; i < hashes.length; i++) {
+            const h = hashes[i] ?? "";
+            if (cached.has(h))
+                continue;
+            if (missTextByHash.has(h))
+                continue;
+            missTextByHash.set(h, chunks[i] ?? "");
+        }
+        const missHashes = [...missTextByHash.keys()];
+        const missTexts = missHashes.map((h) => missTextByHash.get(h) ?? "");
+        let vectorEnabled = true;
+        const newlyEmbedded = [];
+        if (missTexts.length > 0) {
+            const embedResult = await embed(missTexts);
+            if (embedResult.ok) {
+                const writeEmbeds = db.transaction(() => {
+                    for (let i = 0; i < missHashes.length; i++) {
+                        const h = missHashes[i] ?? "";
+                        const vec = embedResult.value[i];
+                        if (!vec)
+                            continue;
+                        insertEmbedding(db, h, provider.id, vec, createdAt, provider.dim);
+                        newlyEmbedded.push({ hash: h, vec });
+                    }
+                });
+                writeEmbeds();
+            }
+            else {
+                vectorEnabled = false;
+            }
+        }
         const write = db.transaction(() => {
             deleteDocument(db, doc.path);
             insertDocument(db, doc);
             chunks.forEach((text, chunkIndex) => {
-                insertChunk(db, {
+                insertChunkRow(db, {
                     path: doc.path,
                     chunkIndex,
                     text,
-                    embedding: embeddings[chunkIndex] ?? null,
+                    contentHash: hashes[chunkIndex] ?? "",
                 });
             });
+            // Mirror only the newly-embedded vectors into `embeddings_vec`.
+            // Hashes that were already cached are already in the vec table from
+            // a prior reindex / indexDocument call — re-inserting them would be
+            // duplicates. INSERT OR IGNORE isn't supported on vec0 virtual
+            // tables, so we keep this list to just the new vectors.
+            for (const { hash, vec } of newlyEmbedded) {
+                insertEmbeddingVec(db, hash, provider.id, vec);
+            }
         });
         write();
         // Keep the freshness manifest in sync with this single write so the next

package/dist/search/reindex.js.map

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package/dist/search/self-write.d.ts

@@ -0,0 +1,4 @@
+export declare function noteSelfWrite(absPath: string, now?: number): void;
+export declare function consumeSelfWrite(absPath: string, now?: number): boolean;
+export declare function resetSelfWriteState(): void;
+//# sourceMappingURL=self-write.d.ts.map

package/dist/search/self-write.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"self-write.d.ts","sourceRoot":"","sources":["../../src/search/self-write.ts"],"names":[],"mappings":"AAwCA,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,GAAE,MAAmB,GAAG,IAAI,CAG7E;AAKD,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,GAAE,MAAmB,GAAG,OAAO,CAWnF;AAID,wBAAgB,mBAAmB,IAAI,IAAI,CAE1C"}