daftari 1.13.0 → 1.14.0

package/CHANGELOG.md

@@ -7,6 +7,62 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [1.14.0] - 2026-05-31
+
+### Added
+
+- **Multi-vault MCP router** (`packages/router/`, published as
+  `daftari-router` v0.1.0). One MCP connection that spans N daftari
+  vaults: read/write tools dispatch to the named vault; search, status,
+  lint, themes, index, and reindex fan out across every child and merge
+  results. Vault selection via explicit `vault:` arg or vault-prefixed
+  paths (e.g. `devops:runbooks/k8s.md`). Catalog seeded from the first
+  child; heterogeneous tool surfaces are warned to stderr. Phase 1 — no
+  HTTP transport, no auth, no cross-vault lint, no score normalization
+  across heterogeneous embedding models. See
+  [docs/multi-vault-howto.md](docs/multi-vault-howto.md) for the
+  task-oriented walkthrough and
+  [packages/router/README.md](packages/router/README.md) for the
+  reference.
+
+- **Tension taxonomy and resolution** (Phase 1 of the Tension Graph plan).
+  Tensions now carry a `kind` (temporal | factual | interpretive |
+  unspecified). New tool `vault_tension_resolve` records how a tension was
+  closed (superseded | corrected | accepted | invalid) with optional
+  rationale and references. `vault_lint` reports tension counts by kind
+  and resolution kind, and surfaces a separate "stable acknowledged"
+  count for explicitly accepted persistent disagreements. Legacy entries
+  without a `kind` field read as `unspecified` and produce no warnings.
+
+### Changed
+
+- **`vault_reindex` coalesces with an in-flight indexing pass** instead
+  of returning a busy error. When a reindex is already running (e.g. the
+  startup-time background pass kicked off when daftari boots a fresh
+  vault), `vault_reindex` now awaits it and then runs the caller's
+  requested reindex against a hot cache. Previously, an agent that
+  asked for a reindex during that startup window got a "still indexing"
+  refusal — a footgun the router stress-tested into a real test failure.
+
+### Fixed
+
+- Test helper `temp-vault.ts` `cpSync` filter now skips `.git/` as well
+  as `.daftari/`. The sample-vault fixture is itself a real git repo;
+  without this, the fixture's `.git` was being copied into every temp
+  vault, making `isGitRepo(vault)` return true for what was supposed to
+  be a fresh directory. Three pre-existing test-helper failures in
+  `test/utils/git.test.ts` and `test/tools/write.test.ts` are fixed in
+  passing.
+
+## [1.13.1] - 2026-05-30
+
+### Changed
+
+- Expanded README `Coherence audit` section: multi-repo case promoted to the
+  headline, sample output added, transitive staleness defined in plain
+  language, GitHub Actions CI snippet added, exit-code table added, CLI flags
+  documented separately from `audit.yaml`. No code changes — docs only.
+
 ## [1.13.0] - 2026-05-30
 
 ### Added

package/README.md

@@ -166,26 +166,137 @@ Each is a clean increment on a surface that already works.
 
 ## Coherence audit
 
-`daftari audit` runs a read-only, deterministic check across one or more
-markdown repos for broken cross-repo references and link-graph transitive
-staleness. It does **not** create a `.daftari/` vault on disk and does not
-write to the audited repos.
+`daftari audit` is a read-only, deterministic check across one or more
+markdown repos for **broken cross-repo references** and **link-graph
+transitive staleness**. It works against any markdown tree — daftari-managed
+or not. The audit creates no `.daftari/` directory and writes nothing to the
+audited repos.
+
+### Multi-repo (the headline use case)
+
+When two or more repos link to each other, the audit detects broken
+references that neither repo's own lint could see — because each repo only
+knows about itself.
 
 ```bash
-# Anonymous repos (no URL patterns):
-daftari audit --repo ~/repos/service-a --repo ~/repos/service-b
+daftari audit \
+  --repo ~/repos/service-a \
+  --repo ~/repos/service-b
+```
+
+That works for relative-path links (`../service-b/docs/api.md`). For
+GitHub-style URL links between repos (`https://github.com/org/service-b/...`),
+declare each repo's URL patterns in an `audit.yaml` so the resolver can map
+them back to the local repo:
 
-# Or with a config file (recommended; see daftari audit --help for the schema):
+```yaml
+# audit.yaml
+repos:
+  - name: service-a
+    path: ~/repos/service-a
+    urls: ["github.com/org/service-a"]
+  - name: service-b
+    path: ~/repos/service-b
+    urls: ["github.com/org/service-b"]
+```
+
+```bash
 daftari audit --config audit.yaml
 ```
 
-Anonymous repos passed via `--repo` do not get URL patterns, so cross-repo
-references that take the form of GitHub URLs (e.g.
-`https://github.com/org/service-a/blob/main/docs/api.md`) into them will be
-silently treated as external. Declare repos in `audit.yaml` with their `urls`
-field to detect these.
+### Single repo
+
+The same command, one `--repo`:
+
+```bash
+daftari audit --repo ./docs
+```
+
+In single-repo mode the cross-repo check trivially has no work, but the
+staleness check still runs over the in-repo link graph.
+
+### What gets detected
+
+- **Missing files.** A link from `service-a/intro.md` to `../service-b/api.md`
+  or `https://github.com/org/service-b/blob/main/api.md` — flagged if `api.md`
+  doesn't exist in `service-b`.
+- **Missing anchors.** Same link with `#run` — flagged if `api.md` has no
+  `## Run` heading.
+- **Direct staleness.** Any doc whose git mtime is older than
+  `staleness.threshold_days` (default 540, ~18 months).
+- **Transitive staleness.** A fresh doc that links — directly or through a
+  chain — to a stale doc is itself flagged, with the shortest chain reported.
+  Catches the case where you keep touching an index page while the docs it
+  links to are rotting.
+
+### Sample output
+
+```markdown
+# Coherence Audit Report
+
+## Totals
+- repos scanned: **2**
+- docs scanned: **47**
+- broken cross-repo refs: **2**
+- directly stale docs: **3**
+- transitively stale docs: **5**
+
+## Broken cross-repo references
+| kind           | source                    | target                  | href |
+|----------------|---------------------------|-------------------------|------|
+| missing_anchor | service-a/intro.md        | service-b/api.md#run    | `https://github.com/org/service-b/blob/main/api.md#run` |
+| missing_file   | service-a/architecture.md | service-b/deleted.md    | `../service-b/deleted.md` |
+
+## Staleness
+| kind       | doc                      | mtime      | chain |
+|------------|--------------------------|------------|-------|
+| transitive | service-a/onboarding.md  | 2026-04-01 | service-a/onboarding.md → service-b/legacy-flow.md |
+```
+
+JSON output (`--output-json` or `output.json` in config) carries the same
+structure with full detail in `brokenRefs[]` and `staleness[]` arrays plus a
+`totals` summary block for compact downstream rendering.
+
+### CI integration
+
+The audit's exit code is designed to gate CI:
+
+```yaml
+# .github/workflows/docs-audit.yml
+name: Docs audit
+on: [pull_request]
+jobs:
+  audit:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with: { fetch-depth: 0 }   # full history so git mtime works
+      - run: npx daftari@latest audit --config audit.yaml
+```
+
+Exit codes:
+
+| code | meaning |
+|------|---------|
+| `0`  | clean run, all findings within `fail_on` thresholds |
+| `1`  | clean run but a threshold was exceeded — CI fails |
+| `2`  | config error (missing required fields, bad paths, malformed YAML) |
+| `3`  | runtime error (IO failure during collection) |
+
+### CLI flags
+
+`audit.yaml` and CLI flags overlap; CLI wins. A warning is printed to stderr
+when `--output` or `--output-json` displaces a value from the config.
+
+- `--repo <path>` — add a repo. May be repeated. Anonymous CLI repos get no
+  URL patterns; URL-based cross-refs into them won't be detected. Use
+  `--config` for URL-aware repos.
+- `--config <path>` — load an `audit.yaml`.
+- `--output <md>` — markdown report destination (default: stdout).
+- `--output-json <json>` — JSON report destination (default: not written).
+- `--help` — full help text.
 
-`audit.yaml` schema:
+### Full `audit.yaml` schema
 
 ```yaml
 repos:
@@ -235,6 +346,7 @@ Design tenets: functions and types, no classes; tool handlers return
   Python package that exposes the 14 daftari tools as LangChain `BaseTool`s
   for use with LangGraph / `create_react_agent`. Sync + async, schemas pulled
   live from `tools/list`.
+- [`packages/router`](packages/router) — multi-vault MCP router that fans out across N Daftari vaults
 
 ## Privacy
 

package/dist/curation/lint.d.ts

@@ -1,14 +1,24 @@
 import { type Result } from "../frontmatter/types.js";
+import { type ResolutionKind, type TensionKind } from "./tension.js";
 export declare const LINT_CHECKS: readonly ["staleFiles", "orphanFiles", "oldDrafts", "stagnantLowConfidence", "deprecatedStillLinked", "unansweredQuestions"];
 export type LintCheckName = (typeof LINT_CHECKS)[number];
 export interface LintFinding {
     path: string;
     detail: string;
 }
+export interface TensionHealth {
+    total: number;
+    byKind: Record<TensionKind, number>;
+    resolvedLifetime: number;
+    byResolutionKind: Record<ResolutionKind, number>;
+    stableAcknowledged: number;
+    unspecifiedLegacy: number;
+}
 export interface LintReport {
     generatedAt: string;
     checks: Record<LintCheckName, LintFinding[]>;
     totalFindings: number;
+    tensionHealth: TensionHealth;
 }
 export interface LintOptions {
     now?: Date;

package/dist/curation/lint.d.ts.map

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package/dist/curation/lint.js

@@ -10,6 +10,7 @@ import { ok } from "../frontmatter/types.js";
 import { listFiles, readFile, resolveVaultPath } from "../storage/local.js";
 import { DRAFT_MAX_DAYS, LOW_CONFIDENCE_MAX_DAYS } from "./decay.js";
 import { ageInDays, computeStaleness } from "./staleness.js";
+import { listTensions, RESOLUTION_KINDS, TENSION_KINDS, } from "./tension.js";
 export const LINT_CHECKS = [
     "staleFiles",
     "orphanFiles",
@@ -205,6 +206,47 @@ export async function runLint(vaultRoot, opts = {}) {
         }
     }
     const totalFindings = LINT_CHECKS.reduce((n, name) => n + checks[name].length, 0);
-    return ok({ generatedAt: now.toISOString(), checks, totalFindings });
+    const tensionHealth = await computeTensionHealth(vaultRoot);
+    if (!tensionHealth.ok)
+        return tensionHealth;
+    return ok({
+        generatedAt: now.toISOString(),
+        checks,
+        totalFindings,
+        tensionHealth: tensionHealth.value,
+    });
+}
+// Aggregates the tension log into the Phase 1 health summary. A missing log
+// is not an error — every counter is just zero.
+async function computeTensionHealth(vaultRoot) {
+    const tensions = await listTensions(vaultRoot);
+    if (!tensions.ok)
+        return tensions;
+    const byKind = Object.fromEntries(TENSION_KINDS.map((k) => [k, 0]));
+    const byResolutionKind = Object.fromEntries(RESOLUTION_KINDS.map((k) => [k, 0]));
+    let total = 0;
+    let resolvedLifetime = 0;
+    let stableAcknowledged = 0;
+    let unspecifiedLegacy = 0;
+    for (const t of tensions.value) {
+        total += 1;
+        byKind[t.kind] += 1;
+        if (t.kind === "unspecified")
+            unspecifiedLegacy += 1;
+        if (t.resolution) {
+            resolvedLifetime += 1;
+            byResolutionKind[t.resolution.kind] += 1;
+            if (t.resolution.kind === "accepted")
+                stableAcknowledged += 1;
+        }
+    }
+    return ok({
+        total,
+        byKind,
+        resolvedLifetime,
+        byResolutionKind,
+        stableAcknowledged,
+        unspecifiedLegacy,
+    });
 }
 //# sourceMappingURL=lint.js.map

package/dist/curation/lint.js.map

@@ -1 +1 @@
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package/dist/curation/tension.d.ts

@@ -1,20 +1,40 @@
 import { type Result } from "../frontmatter/types.js";
 export declare const DEFAULT_TENSION_STATUS = "unresolved";
+export declare const RESOLVED_TENSION_STATUS = "resolved";
+export declare const TENSION_KINDS: readonly ["temporal", "factual", "interpretive", "unspecified"];
+export type TensionKind = (typeof TENSION_KINDS)[number];
+export declare const LOGGABLE_TENSION_KINDS: readonly ["temporal", "factual", "interpretive"];
+export type LoggableTensionKind = (typeof LOGGABLE_TENSION_KINDS)[number];
+export declare const RESOLUTION_KINDS: readonly ["superseded", "corrected", "accepted", "invalid"];
+export type ResolutionKind = (typeof RESOLUTION_KINDS)[number];
+export interface TensionResolution {
+    resolved_at: string;
+    resolved_by: string;
+    kind: ResolutionKind;
+    rationale?: string;
+    references?: string[];
+}
 export interface TensionEntry {
+    id?: string;
     date: string;
     title: string;
+    kind: TensionKind;
     sourceA: string;
     claimA: string;
     sourceB: string;
     claimB: string;
     status: string;
     loggedBy: string;
+    resolved: boolean;
+    resolution?: TensionResolution;
 }
-export type TensionInput = Omit<TensionEntry, "date" | "status"> & {
+export type TensionInput = Omit<TensionEntry, "date" | "status" | "kind" | "id" | "resolved" | "resolution"> & {
     date?: string;
     status?: string;
+    kind: LoggableTensionKind;
 };
 export declare function tensionsPath(vaultRoot: string): string;
 export declare function addTension(vaultRoot: string, input: TensionInput): Promise<Result<TensionEntry, Error>>;
 export declare function listTensions(vaultRoot: string, status?: string): Promise<Result<TensionEntry[], Error>>;
+export declare function resolveTension(vaultRoot: string, id: string, resolution: TensionResolution): Promise<Result<TensionEntry, Error>>;
 //# sourceMappingURL=tension.d.ts.map

package/dist/curation/tension.d.ts.map

@@ -1 +1 @@
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package/dist/curation/tension.js

@@ -2,46 +2,113 @@
 //
 // A "tension" is a recorded contradiction or pull between two documents: two
 // sources that say things which sit uneasily together. Daftari records the
-// tension; it never resolves it. Resolution is a human/curatorial act, so an
-// entry just carries a Status the curator updates by hand.
+// tension; it never resolves it automatically — resolution is a deliberate
+// curatorial act recorded through `vault_tension_resolve`.
 //
-// The log is a human-readable markdown file, .daftari/tensions.md — append-only
-// from this module's side. Each entry is one `## ` block.
+// The log is a human-readable markdown file, .daftari/tensions.md. Each entry
+// is one `## ` block. Phase 1 (2026-05-31) added two structural fields to
+// each entry:
+//
+//   - `kind` (temporal | factual | interpretive | unspecified): the taxonomy
+//     of the disagreement. `unspecified` is reserved for legacy entries logged
+//     before Phase 1; new entries must declare one of the other three.
+//   - a `resolution` block: present iff the tension has been closed.
+//
+// Legacy entries without a `kind` or `id` are read as `kind: "unspecified"`
+// and have no id — they cannot be resolved through the tool. They can still
+// be edited or re-logged.
 import { mkdirSync } from "node:fs";
-import { appendFile, readFile } from "node:fs/promises";
+import { appendFile, readFile, writeFile } from "node:fs/promises";
 import { join } from "node:path";
 import { err, ok } from "../frontmatter/types.js";
 export const DEFAULT_TENSION_STATUS = "unresolved";
+export const RESOLVED_TENSION_STATUS = "resolved";
+export const TENSION_KINDS = ["temporal", "factual", "interpretive", "unspecified"];
+// `unspecified` is for legacy entries only — never accepted on a new log.
+export const LOGGABLE_TENSION_KINDS = ["temporal", "factual", "interpretive"];
+export const RESOLUTION_KINDS = ["superseded", "corrected", "accepted", "invalid"];
 export function tensionsPath(vaultRoot) {
     return join(vaultRoot, ".daftari", "tensions.md");
 }
+function renderResolution(resolution) {
+    const lines = [
+        `- **Resolved at:** ${resolution.resolved_at}`,
+        `- **Resolved by:** ${resolution.resolved_by}`,
+        `- **Resolution kind:** ${resolution.kind}`,
+    ];
+    if (resolution.rationale !== undefined && resolution.rationale.length > 0) {
+        lines.push(`- **Rationale:** ${resolution.rationale}`);
+    }
+    if (resolution.references !== undefined && resolution.references.length > 0) {
+        lines.push(`- **References:** ${resolution.references.join(", ")}`);
+    }
+    return lines.join("\n");
+}
 // Renders one entry in the canonical block format. The blank trailing line
-// keeps consecutive entries visually separated in the file.
+// keeps consecutive entries visually separated in the file. `kind` and `id`
+// are written only when set, to preserve legacy entries untouched on read /
+// re-render.
 function renderEntry(entry) {
-    return (`## ${entry.date} — ${entry.title}\n` +
-        `- **Source A:** ${entry.sourceA} says ${entry.claimA}\n` +
-        `- **Source B:** ${entry.sourceB} says ${entry.claimB}\n` +
-        `- **Status:** ${entry.status}\n` +
-        `- **Logged by:** ${entry.loggedBy}\n`);
+    const lines = [`## ${entry.date} — ${entry.title}`];
+    if (entry.id !== undefined)
+        lines.push(`- **Id:** ${entry.id}`);
+    if (entry.kind !== "unspecified")
+        lines.push(`- **Kind:** ${entry.kind}`);
+    lines.push(`- **Source A:** ${entry.sourceA} says ${entry.claimA}`);
+    lines.push(`- **Source B:** ${entry.sourceB} says ${entry.claimB}`);
+    lines.push(`- **Status:** ${entry.status}`);
+    lines.push(`- **Logged by:** ${entry.loggedBy}`);
+    if (entry.resolution !== undefined) {
+        lines.push(renderResolution(entry.resolution));
+    }
+    return `${lines.join("\n")}\n`;
+}
+// Assigns the next sequential `tension-NNN` id. Scans existing entries for
+// the highest numeric suffix and increments. Legacy entries without an id are
+// skipped — their absence is OK; new entries simply pick up after the last
+// numbered id ever seen.
+function nextTensionId(existing) {
+    let max = 0;
+    for (const e of existing) {
+        if (e.id === undefined)
+            continue;
+        const m = e.id.match(/^tension-(\d+)$/);
+        if (!m)
+            continue;
+        const n = Number.parseInt(m[1], 10);
+        if (Number.isFinite(n) && n > max)
+            max = n;
+    }
+    const next = max + 1;
+    return `tension-${String(next).padStart(3, "0")}`;
 }
-// Appends a tension entry to .daftari/tensions.md. Date defaults to today and
-// status to "unresolved" — a freshly logged tension is unresolved by
-// definition.
+// Appends a tension entry to .daftari/tensions.md. Auto-assigns an `id` if
+// the caller doesn't supply one (the normal path).
 export async function addTension(vaultRoot, input) {
     for (const field of ["title", "sourceA", "claimA", "sourceB", "claimB", "loggedBy"]) {
         if (typeof input[field] !== "string" || input[field].trim().length === 0) {
             return err(new Error(`addTension requires a non-empty '${field}'`));
         }
     }
+    if (!LOGGABLE_TENSION_KINDS.includes(input.kind)) {
+        return err(new Error(`addTension 'kind' must be one of: ${LOGGABLE_TENSION_KINDS.join(", ")} ` +
+            `(unspecified is for legacy entries only)`));
+    }
+    const existing = await listTensions(vaultRoot);
+    if (!existing.ok)
+        return existing;
     const entry = {
+        id: nextTensionId(existing.value),
         date: input.date ?? new Date().toISOString().slice(0, 10),
         title: input.title.trim(),
+        kind: input.kind,
         sourceA: input.sourceA.trim(),
         claimA: input.claimA.trim(),
         sourceB: input.sourceB.trim(),
         claimB: input.claimB.trim(),
         status: input.status ?? DEFAULT_TENSION_STATUS,
         loggedBy: input.loggedBy.trim(),
+        resolved: false,
     };
     try {
         mkdirSync(join(vaultRoot, ".daftari"), { recursive: true });
@@ -65,6 +132,12 @@ function parseSourceLine(value) {
         claim: value.slice(marker + " says ".length).trim(),
     };
 }
+function parseReferences(value) {
+    return value
+        .split(",")
+        .map((s) => s.trim())
+        .filter((s) => s.length > 0);
+}
 function parseBlock(block) {
     const lines = block.split("\n");
     const header = lines[0]?.replace(/^##\s+/, "") ?? "";
@@ -74,20 +147,38 @@ function parseBlock(block) {
     const entry = {
         date: headerMatch[1],
         title: headerMatch[2].trim(),
+        kind: "unspecified",
         sourceA: "",
         claimA: "",
         sourceB: "",
         claimB: "",
         status: DEFAULT_TENSION_STATUS,
         loggedBy: "",
+        resolved: false,
     };
+    // Resolution fields are accumulated separately so the block can be assembled
+    // (or skipped) in one place at the end.
+    let resolvedAt;
+    let resolvedBy;
+    let resolutionKind;
+    let rationale;
+    let references;
     for (const line of lines.slice(1)) {
         const m = line.match(/^-\s+\*\*(.+?):\*\*\s*(.*)$/);
         if (!m)
             continue;
         const label = m[1].toLowerCase();
         const value = m[2];
-        if (label === "source a") {
+        if (label === "id") {
+            entry.id = value.trim();
+        }
+        else if (label === "kind") {
+            const k = value.trim();
+            if (TENSION_KINDS.includes(k)) {
+                entry.kind = k;
+            }
+        }
+        else if (label === "source a") {
             const s = parseSourceLine(value);
             entry.sourceA = s.path;
             entry.claimA = s.claim;
@@ -103,6 +194,37 @@ function parseBlock(block) {
         else if (label === "logged by") {
             entry.loggedBy = value.trim();
         }
+        else if (label === "resolved at") {
+            resolvedAt = value.trim();
+        }
+        else if (label === "resolved by") {
+            resolvedBy = value.trim();
+        }
+        else if (label === "resolution kind") {
+            const rk = value.trim();
+            if (RESOLUTION_KINDS.includes(rk)) {
+                resolutionKind = rk;
+            }
+        }
+        else if (label === "rationale") {
+            rationale = value.trim();
+        }
+        else if (label === "references") {
+            references = parseReferences(value);
+        }
+    }
+    if (resolvedAt !== undefined && resolvedBy !== undefined && resolutionKind !== undefined) {
+        const resolution = {
+            resolved_at: resolvedAt,
+            resolved_by: resolvedBy,
+            kind: resolutionKind,
+        };
+        if (rationale !== undefined && rationale.length > 0)
+            resolution.rationale = rationale;
+        if (references !== undefined && references.length > 0)
+            resolution.references = references;
+        entry.resolution = resolution;
+        entry.resolved = true;
     }
     return entry;
 }
@@ -131,4 +253,71 @@ export async function listTensions(vaultRoot, status) {
     }
     return ok(status ? entries.filter((e) => e.status === status) : entries);
 }
+// Records a resolution on an existing tension. Errors if the id isn't found,
+// or if the tension is already resolved. The whole tensions.md file is read,
+// the matched entry is updated, and the file is rewritten in place. The
+// leading-blank-line convention of the append path is preserved.
+export async function resolveTension(vaultRoot, id, resolution) {
+    let raw;
+    try {
+        raw = await readFile(tensionsPath(vaultRoot), "utf-8");
+    }
+    catch (e) {
+        if (e.code === "ENOENT") {
+            return err(new Error(`tension not found: ${id}`));
+        }
+        const reason = e instanceof Error ? e.message : String(e);
+        return err(new Error(`cannot read tension log: ${reason}`));
+    }
+    // Split the file into a leading preamble (anything before the first
+    // entry) plus a list of entry blocks. Reassembled the same way.
+    const segments = raw.split(/(?=^## )/m);
+    const preamble = segments[0]?.startsWith("## ") ? "" : (segments[0] ?? "");
+    const blocks = segments.filter((s) => s.startsWith("## "));
+    let matched = null;
+    let matchIdx = -1;
+    for (let i = 0; i < blocks.length; i++) {
+        const entry = parseBlock(blocks[i].trim());
+        if (!entry || entry.id !== id)
+            continue;
+        matched = entry;
+        matchIdx = i;
+        break;
+    }
+    if (!matched || matchIdx === -1) {
+        return err(new Error(`tension not found: ${id}`));
+    }
+    if (matched.resolved) {
+        return err(new Error(`tension is already resolved: ${id}`));
+    }
+    const updated = {
+        ...matched,
+        status: RESOLVED_TENSION_STATUS,
+        resolved: true,
+        resolution,
+    };
+    // Preserve the leading blank line of the original block: every block in the
+    // file (except possibly the first) is preceded by one blank line. The split
+    // captures the "## " marker at the start of each block, so we re-add the
+    // blank-line prefix on rewrite.
+    const rewritten = blocks.map((b, i) => {
+        if (i !== matchIdx)
+            return b;
+        // The new block content includes its trailing newline.
+        const rendered = renderEntry(updated);
+        // Preserve the same separator the original block had: count leading
+        // newlines on the original to keep the file's spacing stable.
+        const leading = (b.match(/^\n*/)?.[0] ?? "").length;
+        return `${"\n".repeat(leading)}${rendered}`;
+    });
+    const next = preamble + rewritten.join("");
+    try {
+        await writeFile(tensionsPath(vaultRoot), next);
+        return ok(updated);
+    }
+    catch (e) {
+        const reason = e instanceof Error ? e.message : String(e);
+        return err(new Error(`cannot write tension log: ${reason}`));
+    }
+}
 //# sourceMappingURL=tension.js.map

package/dist/curation/tension.js.map

@@ -1 +1 @@
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package/dist/tools/curation.d.ts

@@ -1,15 +1,17 @@
 import { type AccessContext } from "../access/rbac.js";
-import { type LintCheckName, type LintFinding } from "../curation/lint.js";
+import { type LintCheckName, type LintFinding, type TensionHealth } from "../curation/lint.js";
 import { type ProvenanceEntry } from "../curation/provenance.js";
 import { type TensionEntry } from "../curation/tension.js";
 import { type Result } from "../frontmatter/types.js";
 import type { ToolDefinition } from "./read.js";
 export declare function vaultTensionLog(vaultRoot: string, args: Record<string, unknown>, access?: AccessContext): Promise<Result<TensionEntry, Error>>;
+export declare function vaultTensionResolve(vaultRoot: string, args: Record<string, unknown>, access?: AccessContext): Promise<Result<TensionEntry, Error>>;
 export interface VaultLintResult {
     generatedAt: string;
     filter: LintCheckName | null;
     checks: Partial<Record<LintCheckName, LintFinding[]>>;
     totalFindings: number;
+    tensionHealth: TensionHealth;
 }
 export declare function vaultLint(vaultRoot: string, args?: Record<string, unknown>, access?: AccessContext): Promise<Result<VaultLintResult, Error>>;
 export interface VaultProvenanceResult {

package/dist/tools/curation.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"curation.d.ts","sourceRoot":"","sources":["../../src/tools/curation.ts"],"names":[],"mappings":"AAWA,OAAO,EAAE,KAAK,aAAa,EAAc,MAAM,mBAAmB,CAAC;AACnE,OAAO,EAEL,KAAK,aAAa,EAClB,KAAK,WAAW,EAEhB,KAAK,aAAa,EACnB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,KAAK,eAAe,EAAqB,MAAM,2BAA2B,CAAC;AACpF,OAAO,EAML,KAAK,YAAY,EAElB,MAAM,wBAAwB,CAAC;AAChC,OAAO,EAAW,KAAK,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,WAAW,CAAC;AAkBhD,wBAAsB,eAAe,CACnC,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,YAAY,EAAE,KAAK,CAAC,CAAC,CA+CtC;AAUD,wBAAsB,mBAAmB,CACvC,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,YAAY,EAAE,KAAK,CAAC,CAAC,CA0DtC;AAMD,MAAM,WAAW,eAAe;IAC9B,WAAW,EAAE,MAAM,CAAC;IACpB,MAAM,EAAE,aAAa,GAAG,IAAI,CAAC;IAC7B,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,aAAa,EAAE,WAAW,EAAE,CAAC,CAAC,CAAC;IACtD,aAAa,EAAE,MAAM,CAAC;IACtB,aAAa,EAAE,aAAa,CAAC;CAC9B;AAED,wBAAsB,SAAS,CAC7B,SAAS,EAAE,MAAM,EACjB,IAAI,GAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAM,EAClC,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,eAAe,EAAE,KAAK,CAAC,CAAC,CAuCzC;AAMD,MAAM,WAAW,qBAAqB;IACpC,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,eAAe,EAAE,CAAC;CAC5B;AAID,wBAAsB,eAAe,CACnC,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,qBAAqB,EAAE,KAAK,CAAC,CAAC,CAiB/C;AAMD,eAAO,MAAM,aAAa,EAAE,cAAc,EA+IzC,CAAC"}

package/dist/tools/curation.js

@@ -1,15 +1,18 @@
-// Curation-path tools: vault_tension_log, vault_lint, vault_provenance.
+// Curation-path tools: vault_tension_log, vault_tension_resolve, vault_lint,
+// vault_provenance.
 //
 // These are the advisory surface of the curation engine. vault_lint reports
 // problems but fixes nothing; vault_tension_log records a contradiction but
-// resolves nothing; vault_provenance just reads back write history. Each tool
-// exposes a pure logic function (returns Result, never throws) plus an MCP
-// ToolDefinition, mirroring the read- and write-path tools.
+// resolves nothing automatically; vault_tension_resolve records a deliberate
+// closure (Phase 1 of the tension graph plan); vault_provenance just reads
+// back write history. Each tool exposes a pure logic function (returns
+// Result, never throws) plus an MCP ToolDefinition, mirroring the read- and
+// write-path tools.
 import { hasAnyRead } from "../access/rbac.js";
-import { LINT_CHECKS, runLint } from "../curation/lint.js";
+import { LINT_CHECKS, runLint, } from "../curation/lint.js";
 import { readProvenanceLog } from "../curation/provenance.js";
-import { addTension } from "../curation/tension.js";
-import { ok } from "../frontmatter/types.js";
+import { addTension, LOGGABLE_TENSION_KINDS, RESOLUTION_KINDS, resolveTension, } from "../curation/tension.js";
+import { err, ok } from "../frontmatter/types.js";
 // Curation tools are open to any role with at least one read grant. A guest
 // (or any role with no read access) is denied.
 function requireReadAccess(tool, access) {
@@ -56,6 +59,13 @@ export async function vaultTensionLog(vaultRoot, args, access) {
     const agent = str("agent");
     if (!agent.ok)
         return agent;
+    const kindRaw = str("kind");
+    if (!kindRaw.ok)
+        return kindRaw;
+    if (!LOGGABLE_TENSION_KINDS.includes(kindRaw.value)) {
+        return err(new Error(`vault_tension_log 'kind' must be one of: ${LOGGABLE_TENSION_KINDS.join(", ")} ` +
+            `(unspecified is for legacy entries only and is never loggable)`));
+    }
     return addTension(vaultRoot, {
         title: title.value,
         sourceA: sourceA.value,
@@ -63,8 +73,70 @@ export async function vaultTensionLog(vaultRoot, args, access) {
         claimA: claimA.value,
         claimB: claimB.value,
         loggedBy: agent.value,
+        kind: kindRaw.value,
     });
 }
+// ---------------------------------------------------------------------------
+// vault_tension_resolve
+// ---------------------------------------------------------------------------
+// Records the closure of a tension. `resolved_at` is stamped from the current
+// clock; `resolved_by` comes from the server's access identity (the --user
+// the server was started with). Errors if the id is unknown or the tension
+// is already resolved.
+export async function vaultTensionResolve(vaultRoot, args, access) {
+    const allowed = requireReadAccess("vault_tension_resolve", access);
+    if (!allowed.ok)
+        return allowed;
+    const id = args.id;
+    if (typeof id !== "string" || id.trim().length === 0) {
+        return err(new Error("vault_tension_resolve requires a non-empty 'id' argument"));
+    }
+    const kindRaw = args.kind;
+    if (typeof kindRaw !== "string" || kindRaw.trim().length === 0) {
+        return err(new Error("vault_tension_resolve requires a non-empty 'kind' argument"));
+    }
+    if (!RESOLUTION_KINDS.includes(kindRaw)) {
+        return err(new Error(`vault_tension_resolve 'kind' must be one of: ${RESOLUTION_KINDS.join(", ")}`));
+    }
+    let rationale;
+    if (args.rationale !== undefined && args.rationale !== null) {
+        if (typeof args.rationale !== "string") {
+            return err(new Error("vault_tension_resolve 'rationale' must be a string"));
+        }
+        const trimmed = args.rationale.trim();
+        if (trimmed.length > 0)
+            rationale = trimmed;
+    }
+    let references;
+    if (args.references !== undefined && args.references !== null) {
+        if (!Array.isArray(args.references)) {
+            return err(new Error("vault_tension_resolve 'references' must be an array of strings"));
+        }
+        const refs = [];
+        for (const r of args.references) {
+            if (typeof r !== "string" || r.trim().length === 0) {
+                return err(new Error("vault_tension_resolve 'references' must be an array of non-empty strings"));
+            }
+            refs.push(r.trim());
+        }
+        if (refs.length > 0)
+            references = refs;
+    }
+    // [DATA] resolved_by is taken from the server's access identity (set via
+    // --user at server start). When called without an access context (direct
+    // in-process call from a test) we fall back to a generic marker.
+    const resolvedBy = access?.user ?? "unknown";
+    const resolution = {
+        resolved_at: new Date().toISOString(),
+        resolved_by: resolvedBy,
+        kind: kindRaw,
+    };
+    if (rationale !== undefined)
+        resolution.rationale = rationale;
+    if (references !== undefined)
+        resolution.references = references;
+    return resolveTension(vaultRoot, id.trim(), resolution);
+}
 export async function vaultLint(vaultRoot, args = {}, access) {
     const allowed = requireReadAccess("vault_lint", access);
     if (!allowed.ok)
@@ -90,6 +162,7 @@ export async function vaultLint(vaultRoot, args = {}, access) {
             filter,
             checks: { [filter]: findings },
             totalFindings: findings.length,
+            tensionHealth: report.value.tensionHealth,
         });
     }
     return ok({
@@ -97,6 +170,7 @@ export async function vaultLint(vaultRoot, args = {}, access) {
         filter: null,
         checks: report.value.checks,
         totalFindings: report.value.totalFindings,
+        tensionHealth: report.value.tensionHealth,
     });
 }
 // Returns the write history of a single document, oldest entry first, read
@@ -128,7 +202,9 @@ export const curationTools = [
         annotations: { destructiveHint: true },
         description: "Record a tension — a contradiction or unresolved pull between two " +
             "vault documents — to the advisory tension log. Records the tension; " +
-            "does not resolve it. Entries are logged with status 'unresolved'.",
+            "does not resolve it. The 'kind' parameter classifies the disagreement " +
+            "(temporal: succession; factual: one is wrong; interpretive: same facts, " +
+            "different conclusions). New entries are logged with status 'unresolved'.",
         inputSchema: {
             type: "object",
             properties: {
@@ -156,12 +232,60 @@ export const curationTools = [
                     type: "string",
                     description: "Identity logging the tension, e.g. 'agent:claude-code'",
                 },
+                kind: {
+                    type: "string",
+                    enum: [...LOGGABLE_TENSION_KINDS],
+                    description: "Taxonomy of the disagreement: 'temporal' (A was true, B is true now), " +
+                        "'factual' (one is wrong; needs investigation), or 'interpretive' " +
+                        "(same facts, different conclusions). 'unspecified' is reserved for " +
+                        "legacy entries and is not loggable.",
+                },
             },
-            required: ["title", "sourceA", "claimA", "sourceB", "claimB", "agent"],
+            required: ["title", "sourceA", "claimA", "sourceB", "claimB", "agent", "kind"],
             additionalProperties: false,
         },
         handler: (vaultRoot, args, access) => vaultTensionLog(vaultRoot, args, access),
     },
+    {
+        name: "vault_tension_resolve",
+        title: "Resolve a logged tension",
+        annotations: { destructiveHint: true },
+        description: "Record the closure of a previously logged tension. The 'kind' parameter " +
+            "records HOW the tension was resolved: 'superseded' (older doc deprecated), " +
+            "'corrected' (one side was wrong; fixes applied), 'accepted' (both views " +
+            "stand as a deliberately persistent disagreement), or 'invalid' (false " +
+            "alarm). Optional 'rationale' and 'references' record the reasoning and " +
+            "any supporting documents. Errors if the tension id is unknown or already " +
+            "resolved. 'resolved_at' is stamped server-side; 'resolved_by' is taken " +
+            "from the server's access identity.",
+        inputSchema: {
+            type: "object",
+            properties: {
+                id: {
+                    type: "string",
+                    description: "Id of the tension to resolve, e.g. 'tension-007'",
+                },
+                kind: {
+                    type: "string",
+                    enum: [...RESOLUTION_KINDS],
+                    description: "How the tension was resolved: 'superseded' | 'corrected' | " +
+                        "'accepted' | 'invalid'.",
+                },
+                rationale: {
+                    type: "string",
+                    description: "Optional but strongly recommended: the audit trail explaining the decision.",
+                },
+                references: {
+                    type: "array",
+                    items: { type: "string" },
+                    description: "Optional list of vault-relative paths central to the resolution.",
+                },
+            },
+            required: ["id", "kind"],
+            additionalProperties: false,
+        },
+        handler: (vaultRoot, args, access) => vaultTensionResolve(vaultRoot, args, access),
+    },
     {
         name: "vault_lint",
         title: "Run curation checks",
@@ -170,7 +294,10 @@ export const curationTools = [
             "TTL, orphan files with no inbound links, old drafts, stagnant " +
             "low-confidence files, deprecated files still linked from canonical " +
             "ones, and questions raised but unanswered anywhere in the vault. " +
-            "Reports problems; never auto-fixes. Optionally filter to a single check.",
+            "Also reports tension health (counts by kind and resolution kind, " +
+            "stable acknowledged persistent disagreements, and legacy unspecified " +
+            "entries). Reports problems; never auto-fixes. Optionally filter to a " +
+            "single check.",
         inputSchema: {
             type: "object",
             properties: {

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package/dist/tools/search.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../../src/tools/search.ts"],"names":[],"mappings":"AAQA,OAAO,EAAE,KAAK,aAAa,EAAW,MAAM,mBAAmB,CAAC;AAChE,OAAO,EAAW,KAAK,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,EAEL,KAAK,kBAAkB,EAGvB,KAAK,mBAAmB,EAEzB,MAAM,qBAAqB,CAAC;AAS7B,OAAO,EAAE,KAAK,aAAa,EAAgB,MAAM,sBAAsB,CAAC;AAExE,OAAO,EAAiB,KAAK,OAAO,EAAe,MAAM,wBAAwB,CAAC;AAClF,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,WAAW,CAAC;AAShD,wBAAgB,0BAA0B,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAC,OAAO,EAAE,KAAK,CAAC,CAEpF;AAgBD,wBAAsB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC,CAsBtF;AA+BD,wBAAsB,WAAW,CAC/B,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,kBAAkB,EAAE,KAAK,CAAC,CAAC,CA2B5C;AAMD,wBAAsB,kBAAkB,CACtC,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,MAAM,CAAC,EAAE,aAAa,GACrB,OAAO,CAAC,MAAM,CAAC,mBAAmB,EAAE,KAAK,CAAC,CAAC,CA2B7C;AAMD,MAAM,WAAW,kBAAmB,SAAQ,aAAa;IACvD,KAAK,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,YAAY,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,kBAAkB,EAAE,KAAK,CAAC,CAAC,CAiBhG;AAgBD,eAAO,MAAM,WAAW,EAAE,cAAc,EAoEvC,CAAC"}

package/dist/tools/search.js

@@ -8,7 +8,7 @@
 import { canRead } from "../access/rbac.js";
 import { err, ok } from "../frontmatter/types.js";
 import { DEFAULT_WEIGHTS, hybridSearch, relatedSearch, } from "../search/hybrid.js";
-import { getIndexStatus, indexingBusyMessage, markIndexError, markIndexing, markIndexReady, } from "../search/index-state.js";
+import { getIndexStatus, indexingBusyMessage, markIndexError, markIndexing, markIndexReady, onceIndexReady, } from "../search/index-state.js";
 import { reindexVault } from "../search/reindex.js";
 import { getProvider } from "../search/vector.js";
 import { documentCount, openIndexDb } from "../storage/index-db.js";
@@ -148,9 +148,13 @@ export async function vaultSearchRelated(vaultRoot, args, access) {
     }
 }
 export async function vaultReindex(vaultRoot) {
-    const status = getIndexStatus();
-    if (status.status === "indexing") {
-        return err(new Error(indexingBusyMessage(status)));
+    // Coalesce with any in-flight indexing pass — e.g. the startup-time
+    // background reindex from main(). An agent that calls vault_reindex should
+    // not get a busy error just because the server is finishing its own
+    // startup work; wait for that pass to settle, then run the requested
+    // reindex (which is cheap and idempotent against a hot cache).
+    if (getIndexStatus().status === "indexing") {
+        await new Promise((resolve) => onceIndexReady(resolve));
     }
     markIndexing();
     const result = await reindexVault(vaultRoot);

package/dist/tools/search.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "daftari",
-  "version": "1.13.0",
+  "version": "1.14.0",
   "description": "An open-source, multi-user knowledge vault exposed to AI agents via an MCP server.",
   "license": "MIT",
   "author": "Mihir Wagle / mavaali",