daftari 1.12.5 → 1.13.0

package/dist/audit/config.js.map

@@ -0,0 +1 @@
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package/dist/audit/exit.d.ts

@@ -0,0 +1,6 @@
+import type { AuditReport } from "./types.js";
+export declare function computeExitCode(report: AuditReport, failOn: {
+    brokenRefs: number;
+    transitiveStaleness: number;
+}): 0 | 1;
+//# sourceMappingURL=exit.d.ts.map

package/dist/audit/exit.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"exit.d.ts","sourceRoot":"","sources":["../../src/audit/exit.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAE9C,wBAAgB,eAAe,CAC7B,MAAM,EAAE,WAAW,EACnB,MAAM,EAAE;IAAE,UAAU,EAAE,MAAM,CAAC;IAAC,mBAAmB,EAAE,MAAM,CAAA;CAAE,GAC1D,CAAC,GAAG,CAAC,CAIP"}

package/dist/audit/exit.js

@@ -0,0 +1,8 @@
+export function computeExitCode(report, failOn) {
+    if (report.totals.brokenRefs >= failOn.brokenRefs)
+        return 1;
+    if (report.totals.transitivelyStale >= failOn.transitiveStaleness)
+        return 1;
+    return 0;
+}
+//# sourceMappingURL=exit.js.map

package/dist/audit/exit.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"exit.js","sourceRoot":"","sources":["../../src/audit/exit.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,eAAe,CAC7B,MAAmB,EACnB,MAA2D;IAE3D,IAAI,MAAM,CAAC,MAAM,CAAC,UAAU,IAAI,MAAM,CAAC,UAAU;QAAE,OAAO,CAAC,CAAC;IAC5D,IAAI,MAAM,CAAC,MAAM,CAAC,iBAAiB,IAAI,MAAM,CAAC,mBAAmB;QAAE,OAAO,CAAC,CAAC;IAC5E,OAAO,CAAC,CAAC;AACX,CAAC"}

package/dist/audit/index.d.ts

@@ -0,0 +1,2 @@
+export declare function runAudit(argv: string[]): Promise<number>;
+//# sourceMappingURL=index.d.ts.map

package/dist/audit/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/audit/index.ts"],"names":[],"mappings":"AA2CA,wBAAsB,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAyD9D"}

package/dist/audit/index.js

@@ -0,0 +1,93 @@
+// src/audit/index.ts
+// Top-level entry for `daftari audit`. Loads config, runs the pipeline,
+// emits reports, and translates AuditError.kind to exit codes:
+//   0 — clean run within thresholds
+//   1 — clean run, thresholds exceeded
+//   2 — config error
+//   3 — runtime error
+import { writeFile } from "node:fs/promises";
+import { resolve } from "node:path";
+import { checkBrokenRefs } from "./checks/broken_refs.js";
+import { checkStaleness } from "./checks/staleness.js";
+import { collectRepos } from "./collect.js";
+import { parseAuditConfig } from "./config.js";
+import { computeExitCode } from "./exit.js";
+import { classifyEdges } from "./links.js";
+import { renderJson, renderMarkdown } from "./report.js";
+const HELP = `daftari audit — coherence checks across markdown repos.
+
+Usage:
+  daftari audit --repo <path> [--repo <path> ...] [--output <md>]
+  daftari audit --config audit.yaml [--repo <path> ...]
+  daftari audit --help
+
+Flags:
+  --repo <path>          Add a repo to the audit. May be repeated. Anonymous
+                         CLI repos get no URL patterns — URL-based cross-repo
+                         references to them will not be detected. Use --config
+                         to declare urls explicitly.
+  --config <path>        Load an audit.yaml. CLI flags override its values for
+                         output paths (a warning is printed to stderr).
+  --output <md>          Markdown report destination (default: stdout).
+  --output-json <json>   JSON report destination (default: not written).
+
+Exit codes:
+  0  — run succeeded, all findings under configured thresholds
+  1  — run succeeded but a fail_on threshold was exceeded
+  2  — config error (missing fields, bad paths, malformed YAML)
+  3  — runtime error (IO failure during collection)
+`;
+export async function runAudit(argv) {
+    if (argv.length === 0 || argv.includes("--help") || argv.includes("-h")) {
+        process.stdout.write(HELP);
+        return 0;
+    }
+    const parsed = parseAuditConfig(argv);
+    if (!parsed.ok) {
+        process.stderr.write(`daftari audit: ${parsed.error.message}\n`);
+        return parsed.error.kind === "config" ? 2 : 3;
+    }
+    const config = parsed.value;
+    const collected = await collectRepos(config);
+    if (!collected.ok) {
+        process.stderr.write(`daftari audit: ${collected.error.message}\n`);
+        return collected.error.kind === "config" ? 2 : 3;
+    }
+    const snapshots = collected.value;
+    const edges = classifyEdges(snapshots);
+    const brokenRefs = checkBrokenRefs(snapshots, edges);
+    const staleness = checkStaleness(snapshots, edges, config.staleness.thresholdDays, new Date());
+    const totals = {
+        reposScanned: snapshots.length,
+        docsScanned: snapshots.reduce((n, s) => n + s.docs.size, 0),
+        brokenRefs: brokenRefs.length,
+        directlyStale: staleness.filter((f) => f.kind === "direct").length,
+        transitivelyStale: staleness.filter((f) => f.kind === "transitive").length,
+    };
+    const report = {
+        generatedAt: new Date().toISOString(),
+        config,
+        totals,
+        brokenRefs,
+        staleness,
+    };
+    const md = renderMarkdown(report);
+    try {
+        if (config.output.markdown) {
+            await writeFile(resolve(config.output.markdown), md, "utf-8");
+        }
+        else {
+            process.stdout.write(md);
+        }
+        if (config.output.json) {
+            await writeFile(resolve(config.output.json), renderJson(report), "utf-8");
+        }
+    }
+    catch (e) {
+        const reason = e instanceof Error ? e.message : String(e);
+        process.stderr.write(`daftari audit: write failed: ${reason}\n`);
+        return 3;
+    }
+    return computeExitCode(report, config.failOn);
+}
+//# sourceMappingURL=index.js.map

package/dist/audit/index.js.map

@@ -0,0 +1 @@
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package/dist/audit/links.d.ts

@@ -0,0 +1,4 @@
+import type { LinkEdge, LinkRef, RepoSnapshot } from "./types.js";
+export declare function extractLinksFromBody(body: string): LinkRef[];
+export declare function classifyEdges(snapshots: RepoSnapshot[]): LinkEdge[];
+//# sourceMappingURL=links.d.ts.map

package/dist/audit/links.d.ts.map

@@ -0,0 +1 @@
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package/dist/audit/links.js

@@ -0,0 +1,156 @@
+// src/audit/links.ts
+// Link extraction + classification. Regex-only (no markdown parser dep — v1
+// scope per plan resolution #1). Edges are classified by URL pattern match
+// (with prefix-boundary check, resolution #6) or relative-path escape into
+// another configured repo.
+import { relative as nodeRelative, resolve as nodeResolve, posix } from "node:path";
+const MD_LINK_RE = /\[([^\]]*)\]\(([^)\s]+)\)/g;
+function splitAnchor(rawHref) {
+    const hashIdx = rawHref.indexOf("#");
+    if (hashIdx === -1)
+        return { href: rawHref, anchor: null };
+    return {
+        href: rawHref.slice(0, hashIdx),
+        anchor: rawHref.slice(hashIdx + 1) || null,
+    };
+}
+export function extractLinksFromBody(body) {
+    const out = [];
+    for (const m of body.matchAll(MD_LINK_RE)) {
+        const rawHref = m[2].trim();
+        if (!rawHref)
+            continue;
+        const { href, anchor } = splitAnchor(rawHref);
+        const isUrl = /^https?:\/\//i.test(rawHref);
+        const isRelative = !isUrl &&
+            !rawHref.startsWith("#") &&
+            !rawHref.startsWith("/") &&
+            !/^[a-zA-Z][a-zA-Z0-9+.-]*:/.test(rawHref); // any scheme like mailto:
+        out.push({ rawHref, href, anchor, isUrl, isRelative });
+    }
+    return out;
+}
+// A URL pattern matches a URL iff the URL's host+path starts with the pattern
+// AND the next char in the URL is /, #, ?, or end-of-string. This rejects
+// substring matches like `github.com/org/service-a-tools` against pattern
+// `github.com/org/service-a`.
+function urlMatchesPattern(url, pattern) {
+    const stripped = url.replace(/^https?:\/\//i, "");
+    if (!stripped.startsWith(pattern))
+        return false;
+    const next = stripped.charAt(pattern.length);
+    return next === "" || next === "/" || next === "#" || next === "?";
+}
+// Pulls the path-after-pattern out of a known-matching URL: strips scheme,
+// pattern, and the GitHub blob/tree/... prefix when present. Returns relPath
+// + optional anchor.
+function extractTargetPathFromUrl(url, pattern) {
+    const stripped = url.replace(/^https?:\/\//i, "");
+    const rest = stripped.slice(pattern.length); // starts with "/" or ""
+    if (rest === "")
+        return null; // pattern alone, no file
+    // strip leading "/"
+    let tail = rest.startsWith("/") ? rest.slice(1) : rest;
+    // Split anchor / query
+    const queryIdx = tail.indexOf("?");
+    if (queryIdx !== -1)
+        tail = tail.slice(0, queryIdx);
+    const hashIdx = tail.indexOf("#");
+    const anchor = hashIdx !== -1 ? tail.slice(hashIdx + 1) || null : null;
+    if (hashIdx !== -1)
+        tail = tail.slice(0, hashIdx);
+    if (!tail)
+        return null;
+    // GitHub URLs: /blob/<branch>/<path> or /tree/<branch>/<path>.
+    // Strip if present; otherwise treat `tail` as the relPath directly.
+    const ghMatch = tail.match(/^(blob|tree|raw)\/[^/]+\/(.+)$/);
+    const relPath = ghMatch ? ghMatch[2] : tail;
+    return { relPath: posix.normalize(relPath), anchor };
+}
+// Note: repo.config.path values are always real (symlink-resolved) paths —
+// config.ts#validateRepoPath calls realpathSync() before storing them. The
+// containment check below (`rel.startsWith("..")`) is therefore symlink-safe
+// for the source side. The resolved href target itself is not realpathSync'd
+// because it may not exist on disk (that's what broken_refs.ts catches).
+// Reference-style links `[text][ref]` are intentionally NOT extracted in v1
+// (audit operates on arbitrary markdown repos without needing full AST parsing;
+// mention here per plan resolution #1).
+function resolveRelative(fromRepoPath, fromRelPath, href, repos) {
+    const fromAbs = nodeResolve(fromRepoPath, fromRelPath);
+    const fromDir = nodeResolve(fromAbs, "..");
+    const resolvedAbs = nodeResolve(fromDir, href);
+    for (const repo of repos) {
+        const rel = nodeRelative(repo.config.path, resolvedAbs);
+        if (!rel.startsWith("..") && !nodeResolve(repo.config.path, rel).startsWith("..")) {
+            // posix-normalize for cross-platform sanity
+            const posixRel = rel.split(/[\\/]/).join("/");
+            return { repo: repo.config.name, relPath: posixRel };
+        }
+    }
+    return null;
+}
+export function classifyEdges(snapshots) {
+    const edges = [];
+    for (const snap of snapshots) {
+        const sourceRepo = snap.config.name;
+        for (const doc of snap.docs.values()) {
+            for (const link of doc.links) {
+                if (link.isUrl) {
+                    // Try each repo's url patterns. First match wins.
+                    let matched = false;
+                    for (const targetSnap of snapshots) {
+                        for (const pattern of targetSnap.config.urls) {
+                            if (!urlMatchesPattern(link.href, pattern))
+                                continue;
+                            const target = extractTargetPathFromUrl(link.href, pattern);
+                            if (!target)
+                                continue;
+                            edges.push({
+                                sourceRepo,
+                                sourcePath: doc.relPath,
+                                targetRepo: targetSnap.config.name,
+                                targetPath: target.relPath,
+                                targetAnchor: target.anchor ?? link.anchor,
+                                rawHref: link.rawHref,
+                            });
+                            matched = true;
+                            break;
+                        }
+                        if (matched)
+                            break;
+                    }
+                    // Unmatched URLs are external (no configured repo owns them); drop.
+                    // Per plan resolution #3: anonymous repos get no urls[], and URLs
+                    // targeting unconfigured repos go silently unflagged in v1.
+                    continue;
+                }
+                if (!link.isRelative)
+                    continue; // anchors-only, mailto:, etc.
+                const resolved = resolveRelative(snap.config.path, doc.relPath, link.href, snapshots);
+                if (!resolved) {
+                    // Escaped to an unconfigured location; record as edge into sourceRepo
+                    // with an unresolvable path so broken_refs flags it.
+                    edges.push({
+                        sourceRepo,
+                        sourcePath: doc.relPath,
+                        targetRepo: sourceRepo,
+                        targetPath: link.href, // unresolved sentinel
+                        targetAnchor: link.anchor,
+                        rawHref: link.rawHref,
+                    });
+                    continue;
+                }
+                edges.push({
+                    sourceRepo,
+                    sourcePath: doc.relPath,
+                    targetRepo: resolved.repo,
+                    targetPath: resolved.relPath,
+                    targetAnchor: link.anchor,
+                    rawHref: link.rawHref,
+                });
+            }
+        }
+    }
+    return edges;
+}
+//# sourceMappingURL=links.js.map

package/dist/audit/links.js.map

@@ -0,0 +1 @@
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package/dist/audit/report.d.ts

@@ -0,0 +1,4 @@
+import type { AuditReport } from "./types.js";
+export declare function renderMarkdown(report: AuditReport): string;
+export declare function renderJson(report: AuditReport): string;
+//# sourceMappingURL=report.d.ts.map

package/dist/audit/report.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"report.d.ts","sourceRoot":"","sources":["../../src/audit/report.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,WAAW,EAAsC,MAAM,YAAY,CAAC;AAyBlF,wBAAgB,cAAc,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CA8B1D;AAED,wBAAgB,UAAU,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CAEtD"}

package/dist/audit/report.js

@@ -0,0 +1,58 @@
+// src/audit/report.ts
+// Pure formatters over AuditReport. No IO.
+function renderBrokenRefs(rows) {
+    if (rows.length === 0)
+        return "_no broken cross-repo references._\n";
+    const lines = ["| kind | source | target | href |", "|---|---|---|---|"];
+    for (const r of rows) {
+        const targetAnchor = r.target.anchor ? `#${r.target.anchor}` : "";
+        lines.push(`| ${r.kind} | ${r.source.repo}/${r.source.path} | ` +
+            `${r.target.repo}/${r.target.path}${targetAnchor} | \`${r.rawHref}\` |`);
+    }
+    return `${lines.join("\n")}\n`;
+}
+function renderStaleness(rows) {
+    if (rows.length === 0)
+        return "_no staleness findings._\n";
+    const lines = ["| kind | doc | mtime | chain |", "|---|---|---|---|"];
+    for (const r of rows) {
+        const chain = r.staleChain ? r.staleChain.map((n) => `${n.repo}/${n.path}`).join(" → ") : "—";
+        lines.push(`| ${r.kind} | ${r.repo}/${r.path} | ${r.mtime} | ${chain} |`);
+    }
+    return `${lines.join("\n")}\n`;
+}
+export function renderMarkdown(report) {
+    const t = report.totals;
+    const empty = t.brokenRefs === 0 && t.directlyStale === 0 && t.transitivelyStale === 0;
+    const head = [
+        "# Coherence Audit Report",
+        "",
+        `_generated: ${report.generatedAt}_`,
+        "",
+        "## Totals",
+        "",
+        `- repos scanned: **${t.reposScanned}**`,
+        `- docs scanned: **${t.docsScanned}**`,
+        `- broken cross-repo refs: **${t.brokenRefs}**`,
+        `- directly stale docs: **${t.directlyStale}**`,
+        `- transitively stale docs: **${t.transitivelyStale}**`,
+        "",
+    ];
+    if (empty) {
+        head.push("_no findings — coherence checks passed._\n");
+        return head.join("\n");
+    }
+    return [
+        ...head,
+        "## Broken cross-repo references",
+        "",
+        renderBrokenRefs(report.brokenRefs),
+        "## Staleness",
+        "",
+        renderStaleness(report.staleness),
+    ].join("\n");
+}
+export function renderJson(report) {
+    return JSON.stringify(report, null, 2);
+}
+//# sourceMappingURL=report.js.map

package/dist/audit/report.js.map

@@ -0,0 +1 @@
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package/dist/audit/types.d.ts

@@ -0,0 +1,94 @@
+export type AuditConfig = {
+    repos: RepoConfig[];
+    output: {
+        markdown?: string;
+        json?: string;
+    };
+    staleness: {
+        thresholdDays: number;
+    };
+    failOn: {
+        brokenRefs: number;
+        transitiveStaleness: number;
+    };
+};
+export type RepoConfig = {
+    name: string;
+    path: string;
+    docsGlob: string;
+    urls: string[];
+};
+export type DocSnapshot = {
+    relPath: string;
+    absPath: string;
+    mtime: string;
+    mtimeSource: "git" | "fs";
+    headings: Set<string>;
+    links: LinkRef[];
+};
+export type LinkRef = {
+    rawHref: string;
+    href: string;
+    anchor: string | null;
+    isUrl: boolean;
+    isRelative: boolean;
+};
+export type RepoSnapshot = {
+    config: RepoConfig;
+    docs: Map<string, DocSnapshot>;
+};
+export type LinkEdge = {
+    sourceRepo: string;
+    sourcePath: string;
+    targetRepo: string;
+    targetPath: string;
+    targetAnchor: string | null;
+    rawHref: string;
+};
+export type BrokenRefFinding = {
+    kind: "missing_file" | "missing_anchor";
+    source: {
+        repo: string;
+        path: string;
+    };
+    target: {
+        repo: string;
+        path: string;
+        anchor: string | null;
+    };
+    rawHref: string;
+};
+export type StalenessFinding = {
+    kind: "direct" | "transitive";
+    repo: string;
+    path: string;
+    mtime: string;
+    staleChain?: Array<{
+        repo: string;
+        path: string;
+        mtime: string;
+    }>;
+};
+export type AuditReport = {
+    generatedAt: string;
+    config: AuditConfig;
+    totals: {
+        reposScanned: number;
+        docsScanned: number;
+        brokenRefs: number;
+        directlyStale: number;
+        transitivelyStale: number;
+    };
+    brokenRefs: BrokenRefFinding[];
+    staleness: StalenessFinding[];
+};
+export type AuditError = {
+    kind: "config";
+    message: string;
+} | {
+    kind: "runtime";
+    message: string;
+};
+export declare const configError: (message: string) => AuditError;
+export declare const runtimeError: (message: string) => AuditError;
+//# sourceMappingURL=types.d.ts.map

package/dist/audit/types.d.ts.map

@@ -0,0 +1 @@
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package/dist/audit/types.js

@@ -0,0 +1,11 @@
+// src/audit/types.ts
+// Shared types for the coherence audit. Pure data shapes; no logic.
+export const configError = (message) => ({
+    kind: "config",
+    message,
+});
+export const runtimeError = (message) => ({
+    kind: "runtime",
+    message,
+});
+//# sourceMappingURL=types.js.map

package/dist/audit/types.js.map

@@ -0,0 +1 @@
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package/dist/cli.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AA4KA,wBAAsB,SAAS,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CA8DnE;AAED,wBAAsB,GAAG,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAqBvD"}
+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AA6KA,wBAAsB,SAAS,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CA8DnE;AAED,wBAAsB,GAAG,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CA2BvD"}

package/dist/cli.js

@@ -20,6 +20,7 @@ const USAGE = `daftari — an MCP server that exposes a curated markdown vault t
 Usage:
   daftari --init [path]               Scaffold a new vault (default: ./daftari-vault)
   daftari --vault <path> [options]    Start the MCP server (stdio) against a vault
+  daftari audit [options]             Run a cross-repo coherence audit (see: daftari audit --help)
 
 Server options:
   --user <username>    Identity the server runs as (default: guest)
@@ -200,6 +201,11 @@ export async function initVault(targetPath) {
     return 0;
 }
 export async function run(argv) {
+    if (argv[0] === "audit") {
+        const { runAudit } = await import("./audit/index.js");
+        process.exitCode = await runAudit(argv.slice(1));
+        return;
+    }
     if (argv.includes("--help") || argv.includes("-h")) {
         process.stdout.write(USAGE);
         return;

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "daftari",
-  "version": "1.12.5",
+  "version": "1.13.0",
   "description": "An open-source, multi-user knowledge vault exposed to AI agents via an MCP server.",
   "license": "MIT",
   "author": "Mihir Wagle / mavaali",