claude-memory-explorer 0.1.0

package/.claude-plugin/plugin.json

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+{
+  "name": "claude-memory-explorer",
+  "version": "0.1.0",
+  "description": "Browse, dedupe, lint, and promote your Claude Code auto-memory across every project. Closes the gap anthropics/claude-code#58840 describes.",
+  "homepage": "https://github.com/hseinmoussa/claude-memory-explorer",
+  "license": "MIT",
+  "author": {
+    "name": "Hussein Moussa",
+    "url": "https://github.com/hseinmoussa"
+  },
+  "skills": ["./skills/curate-memory"],
+  "mcpServers": {
+    "memex": {
+      "type": "stdio",
+      "command": "npx",
+      "args": ["-y", "claude-memory-explorer", "mcp"]
+    }
+  }
+}

package/LICENSE

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+MIT License
+
+Copyright (c) 2026 Hussein Moussa
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

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+# memex — claude-memory-explorer
+
+[![CI](https://github.com/hseinmoussa/claude-memory-explorer/actions/workflows/ci.yml/badge.svg)](https://github.com/hseinmoussa/claude-memory-explorer/actions/workflows/ci.yml)
+[![npm version](https://img.shields.io/npm/v/claude-memory-explorer.svg)](https://www.npmjs.com/package/claude-memory-explorer)
+[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](LICENSE)
+
+> Browse, dedupe, lint, and promote your Claude Code auto-memory across every project.
+> Every mutation is journaled and reversible by `memex undo`.
+> Closes the gap [anthropics/claude-code#58840](https://github.com/anthropics/claude-code/issues/58840) describes.
+
+Claude Code stores per-project memory at `~/.claude/projects/<slug>/memory/`.
+Every project is a silo. After a few months of real use:
+
+- The same `user_*` / `feedback_*` rule ends up in 12 different projects
+- Stale project facts keep loading into every session
+- `user`/`feedback` memories that should live in `~/.claude/CLAUDE.md` don't
+- `MEMORY.md` files quietly cross the documented 200-line / 25KB cutoff and the tail is dropped at load time
+- Malformed YAML in a single memory file (which Claude itself sometimes writes) makes that memory invisible — and there's no warning
+
+`memex` is a CLI, TUI, and MCP server that finds and fixes all of that. Install once as a Claude Code plugin and Claude can curate its own memory inside a normal session.
+
+## What's inside
+
+```
+memex list       List memories across all projects
+memex doctor     One-shot health report (run weekly)
+memex lint       Structural problems (CI-friendly)
+memex dedupe     Find duplicate memories across projects
+memex merge      Collapse a duplicate cluster down to its representative
+memex promote    Move a memory (or whole cluster) into ~/.claude/CLAUDE.md
+memex undo       Reverse the most recent mutation (any of the above)
+memex tui        Interactive three-pane browser
+memex mcp        Run as an MCP server for Claude Code plugins
+```
+
+Every mutation goes through a journaled `Plan → applyPlan` layer at
+`~/.claude/.memex/log/`. **Everything is undoable.** `memex undo` reverses
+the most recent plan; a second undo is redo.
+
+## Install
+
+### As a Claude Code plugin (recommended)
+
+```bash
+/plugin install claude-memory-explorer@community
+```
+
+If the community catalog hasn't synced this plugin yet (sync is ~once
+a day), install directly from this repo instead:
+
+```bash
+/plugin marketplace add hseinmoussa/claude-memory-explorer
+/plugin install claude-memory-explorer
+```
+
+Once installed, ask Claude:
+
+> "Clean up my memory."
+
+…and the bundled `curate-memory` skill takes over. Claude calls `doctor`,
+shows you the findings, generates Plans for the suggested fixes, asks for
+your OK, then applies them via `apply_plan` (all journaled, all undoable).
+
+### As a standalone CLI
+
+```bash
+npm install -g claude-memory-explorer
+
+memex doctor                     # health snapshot
+memex lint                       # structural issues
+memex dedupe                     # cross-project duplicates
+memex tui                        # interactive browser
+```
+
+Or one-shot via `npx`:
+
+```bash
+npx claude-memory-explorer doctor
+```
+
+## The killer demo
+
+Three projects, same user-preference memory written into each:
+
+```
+~/.claude/projects/-Users-foo-Desktop-vida/memory/user_terse.md
+~/.claude/projects/-Users-foo-Desktop-app/memory/user_terse.md
+~/.claude/projects/-Users-foo-Desktop-bot/memory/user_terse.md
+```
+
+`memex dedupe` finds the cluster and flags it as a promote-to-global candidate:
+
+```
+c1  type=user  count=3  distinctProjects=3  [promote-to-global candidate]
+  ★ -Users-foo-Desktop-bot/user_terse.md
+    -Users-foo-Desktop-vida/user_terse.md
+    -Users-foo-Desktop-app/user_terse.md
+```
+
+`memex promote --cluster c1 --apply` then:
+
+1. Writes the body into `~/.claude/CLAUDE.md` under a managed marker block:
+   ```
+   <!-- memex:start:user_terse -->
+   ## Be terse
+   The user prefers terse, direct answers.
+   <!-- memex:end:user_terse -->
+   ```
+2. Deletes the 3 source files
+3. Cleans the affected `MEMORY.md` indexes (removes pointer lines, leaves unrelated entries intact)
+
+Result: one block in `~/.claude/CLAUDE.md` (which Claude loads in every session of every project) replaces three siloed copies.
+
+Run `memex undo` and everything is restored byte-for-byte.
+
+## How memex thinks
+
+| Concept | Description |
+|---|---|
+| **Memory** | A markdown file at `~/.claude/projects/<slug>/memory/<topic>.md` with YAML frontmatter (`type: user\|feedback\|project\|reference`) |
+| **Index** | `MEMORY.md` in each memory dir. Documented as a list of pointer-style links to topic files; in practice Claude writes inline content too. memex tolerates both. |
+| **Worktree collapse** | `<slug>--claude-worktrees-*` slugs collapse to the base slug when counting distinct projects, so worktrees of one repo don't inflate the duplicate count |
+| **Promotion candidate** | A cluster where `distinctProjects ≥ 3` AND `type ∈ {user, feedback}`. Project- and reference-typed memories stay project-scoped. |
+| **Managed block** | `<!-- memex:start:<slug> -->` / `<!-- memex:end:<slug> -->` markers in `~/.claude/CLAUDE.md`. memex never touches content outside its own markers. |
+| **Plan** | A JSON-serializable list of `write` / `delete` / `ensure-dir` ops. Every mutation builds a plan, then `applyPlan` is the single writer. |
+| **Journal** | `~/.claude/.memex/log/<id>.json`. One entry per applied plan, with inverse ops captured at apply time. `memex undo` walks the journal. |
+
+## MCP server tools
+
+When installed as a plugin, the MCP server exposes 11 tools:
+
+| Tool | Type | Description |
+|---|---|---|
+| `list_memories` | read | All memories, filterable by type/project |
+| `find_duplicates` | read | Cross-project clusters |
+| `lint` | read | Structural issues |
+| `doctor` | read | Aggregate health report |
+| `journal_list` | read | All journal entries |
+| `journal_latest` | read | Most recent journal entry |
+| `plan_merge` | plan | Build (don't execute) a merge plan |
+| `plan_promote_memory` | plan | Build a single-memory promote plan |
+| `plan_promote_cluster` | plan | Build a whole-cluster promote plan |
+| `apply_plan` | write | Execute a Plan (journaled, undoable) |
+| `undo` | write | Reverse most recent (or specific) plan |
+
+Plan tools never execute. Claude must explicitly call `apply_plan` — that's the confirmation surface.
+
+## Compared to existing tools
+
+| Tool | Scope | What it does | What it doesn't |
+|---|---|---|---|
+| **memex** | Cross-project | Browse / lint / dedupe / promote / merge / journal-backed undo | (this is the gap) |
+| `consolidate-memory` (Anthropic, built-in) | One project | LLM-driven dedup inside a memory dir | Cross-project view, structural lint, undo |
+| `dream-skill` (community) | One project | Hook-triggered intra-project consolidation | Cross-project promotion |
+| `mem0` / `supermemory` / vector-DB MCP servers | Separate store | Bolt a different memory store onto Claude | Don't touch the native `~/.claude/projects/*/memory/` format |
+
+`memex` is the **curator** for the native auto-memory format, not a replacement store.
+
+## Status
+
+Pre-1.0. The CLI commands and MCP server are stable and tested
+(191 unit + integration tests across 19 files, real end-to-end
+round-trips for every mutation: scan, lint, dedupe, merge, promote,
+undo, MCP, TUI). Tested on Node 20 and 22 on macOS and Ubuntu
+(see CI badge above). Windows untested.
+
+## Roadmap
+
+- [x] v0.1: scan + parse, lint, doctor, dedupe (exact-match), merge, promote, undo, TUI, MCP
+- [ ] v0.2: near-duplicate detection (TF-IDF char-3gram cosine, ~80 lines, zero new deps)
+- [ ] v0.3: scheduled hook (auto-`doctor` weekly), conflict detection
+- [ ] v0.4: semantic dedup (transformers.js + local MiniLM embedding)
+- [ ] v1.0: when MCP TypeScript SDK v2 stabilizes
+
+## License
+
+MIT — see [LICENSE](LICENSE).

package/dist/cli/commands/dedupe.d.ts

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+export declare function runDedupe(argv: string[]): number;

package/dist/cli/commands/dedupe.js

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+// `memex dedupe` — find duplicate memories across all projects.
+//
+// Read-only. Mutating merge/promote ships in Phase 6.
+//
+// Exit codes:
+//   0  no duplicate clusters found
+//   1  one or more clusters found (so CI users can gate on "no dupes")
+//   2  bad usage
+import { homedir } from "node:os";
+import { relative } from "node:path";
+import { findDuplicates } from "../../core/dedupe.js";
+function parseArgs(argv) {
+    const out = {
+        format: "human",
+        noIntra: false,
+        promoteOnly: false,
+        verbose: false,
+        help: false,
+    };
+    for (let i = 0; i < argv.length; i++) {
+        const a = argv[i];
+        switch (a) {
+            case "--project":
+                out.project = argv[++i];
+                break;
+            case "--root":
+                out.root = argv[++i];
+                break;
+            case "--json":
+                out.format = "json";
+                break;
+            case "--format": {
+                const f = argv[++i];
+                if (f !== "human" && f !== "fdupes" && f !== "json") {
+                    throw new Error(`--format must be human|fdupes|json (got: ${f})`);
+                }
+                out.format = f;
+                break;
+            }
+            case "--no-intra":
+                out.noIntra = true;
+                break;
+            case "--promote-only":
+                out.promoteOnly = true;
+                break;
+            case "--verbose":
+            case "-v":
+                out.verbose = true;
+                break;
+            case "--help":
+            case "-h":
+                out.help = true;
+                break;
+            default:
+                throw new Error(`unknown flag: ${a}`);
+        }
+    }
+    return out;
+}
+const HELP = `memex dedupe — find duplicate memories across projects
+
+Usage:
+  memex dedupe [--project SUBSTR] [--format human|fdupes|json] [--json]
+               [--no-intra] [--promote-only] [--verbose] [--root PATH]
+
+Flags:
+  --project SUBSTR   Restrict to projects whose slug contains SUBSTR
+  --format FORMAT    human (default), fdupes (pipe-friendly), json
+  --json             Shorthand for --format json
+  --no-intra         Hide clusters whose members are all in one project
+  --promote-only     Show only clusters flagged as promotion candidates
+                     (distinctProjects >= 3 AND type in {user, feedback})
+  --verbose, -v      Surface scan-level warnings on stderr
+  --root PATH        Override projects root (default: ~/.claude/projects)
+
+Exit codes:
+  0   no duplicate clusters found
+  1   one or more clusters found
+  2   bad usage
+
+Notes:
+  v0.1 finds EXACT body-content matches after normalization (NFC,
+  smart-quote fold, lowercase, strip trivial markdown wrappers,
+  collapse whitespace). Near-duplicates with paraphrased wording are
+  not yet detected — that's planned for v0.2.
+`;
+function shortPath(p) {
+    const home = homedir();
+    if (p.startsWith(home))
+        return "~" + p.slice(home.length);
+    try {
+        const rel = relative(process.cwd(), p);
+        return rel.length < p.length ? rel : p;
+    }
+    catch {
+        return p;
+    }
+}
+function filterClusters(clusters, args) {
+    let out = clusters;
+    if (args.noIntra)
+        out = out.filter((c) => !c.intraProject);
+    if (args.promoteOnly)
+        out = out.filter((c) => c.promotionCandidate);
+    return out;
+}
+function renderHuman(result, clusters) {
+    const lines = [];
+    if (clusters.length === 0) {
+        lines.push(`✓ No duplicate clusters across ${result.summary.projectsScanned} projects ` +
+            `(${result.summary.memoriesScanned} memories scanned).`);
+        return lines.join("\n") + "\n";
+    }
+    for (const c of clusters) {
+        const flags = [
+            c.intraProject ? "intra-project" : null,
+            c.promotionCandidate ? "promote-to-global candidate" : null,
+        ].filter(Boolean);
+        const tag = flags.length ? `  [${flags.join(", ")}]` : "";
+        lines.push(`${c.id}  type=${c.type}  count=${c.count}  distinctProjects=${c.distinctProjects}${tag}`);
+        lines.push(`  fingerprint: ${c.fingerprint.slice(0, 12)}…`);
+        for (const m of c.members) {
+            const star = m.id === c.representative.id ? "★" : " ";
+            lines.push(`  ${star} ${m.id}`);
+            lines.push(`      name: ${m.name ?? "(none)"}`);
+            lines.push(`      ${shortPath(m.filePath)}  (${m.bodyBytes}B, ${m.mtime})`);
+        }
+        lines.push("");
+    }
+    lines.push(`${clusters.length} cluster(s) shown / ${result.summary.clusterCount} total · ` +
+        `${result.summary.duplicateFileCount} duplicate files · ` +
+        `${result.summary.wastedBytes}B wasted · ` +
+        `${result.summary.promotionCandidates} promote-to-global candidates`);
+    if (result.summary.skippedEmptyBodies > 0) {
+        lines.push(`(${result.summary.skippedEmptyBodies} empty-body memorie(s) excluded from clustering)`);
+    }
+    return lines.join("\n") + "\n";
+}
+function renderFdupes(clusters) {
+    // Classic fdupes shape: blank line between clusters, no per-cluster header.
+    // We do prepend a `#` comment with the cluster id so the output is still
+    // human-grepable, then list filePath one per line, representative first.
+    const lines = [];
+    for (const c of clusters) {
+        lines.push(`# ${c.id}  type=${c.type}  count=${c.count}  distinctProjects=${c.distinctProjects}`);
+        const rep = c.members.find((m) => m.id === c.representative.id);
+        lines.push(rep.filePath);
+        for (const m of c.members) {
+            if (m.id !== rep.id)
+                lines.push(m.filePath);
+        }
+        lines.push("");
+    }
+    return lines.join("\n");
+}
+export function runDedupe(argv) {
+    let args;
+    try {
+        args = parseArgs(argv);
+    }
+    catch (err) {
+        process.stderr.write(`memex dedupe: ${err instanceof Error ? err.message : String(err)}\n\n${HELP}`);
+        return 2;
+    }
+    if (args.help) {
+        process.stdout.write(HELP);
+        return 0;
+    }
+    const result = findDuplicates({
+        projectsRoot: args.root,
+        projectFilter: args.project,
+        onWarning: args.verbose ? (m) => process.stderr.write(`${m}\n`) : undefined,
+    });
+    const visible = filterClusters(result.clusters, args);
+    if (args.format === "json") {
+        process.stdout.write(`${JSON.stringify({ ...result, clusters: visible }, null, 2)}\n`);
+    }
+    else if (args.format === "fdupes") {
+        process.stdout.write(renderFdupes(visible));
+    }
+    else {
+        process.stdout.write(renderHuman(result, visible));
+    }
+    // Exit code reflects the unfiltered total — filters are presentation only.
+    return result.summary.clusterCount > 0 ? 1 : 0;
+}
+//# sourceMappingURL=dedupe.js.map

package/dist/cli/commands/dedupe.js.map

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package/dist/cli/commands/doctor.d.ts

@@ -0,0 +1 @@
+export declare function runDoctorCli(argv: string[]): number;

package/dist/cli/commands/doctor.js

@@ -0,0 +1,177 @@
+// `memex doctor` — human-friendly health report.
+//
+// Exit codes:
+//   0  no errors found
+//   1  one or more error-level issues
+//   2  bad usage
+import { homedir } from "node:os";
+import { relative } from "node:path";
+import { runDoctor } from "../../core/doctor.js";
+function parseArgs(argv) {
+    const out = { json: false, verbose: false, help: false };
+    for (let i = 0; i < argv.length; i++) {
+        const a = argv[i];
+        switch (a) {
+            case "--project":
+                out.project = argv[++i];
+                break;
+            case "--root":
+                out.root = argv[++i];
+                break;
+            case "--json":
+                out.json = true;
+                break;
+            case "--verbose":
+            case "-v":
+                out.verbose = true;
+                break;
+            case "--help":
+            case "-h":
+                out.help = true;
+                break;
+            default:
+                throw new Error(`unknown flag: ${a}`);
+        }
+    }
+    return out;
+}
+const HELP = `memex doctor — health snapshot of your memory tree
+
+Usage:
+  memex doctor [--project SUBSTR] [--json] [--verbose] [--root PATH]
+
+Flags:
+  --project SUBSTR  Filter projects whose slug contains SUBSTR
+  --json            Output JSON instead of formatted report
+  --verbose, -v     Surface scan-level warnings on stderr
+  --root PATH       Override projects root (default: ~/.claude/projects)
+
+Exit codes:
+  0   no errors
+  1   one or more error issues found
+  2   bad usage
+`;
+const SEV_LABEL = {
+    error: "ERROR",
+    warn: "WARN ",
+    info: "INFO ",
+};
+function shortPath(p) {
+    if (!p)
+        return "";
+    const home = homedir();
+    if (p.startsWith(home))
+        return "~" + p.slice(home.length);
+    try {
+        const rel = relative(process.cwd(), p);
+        return rel.length < p.length ? rel : p;
+    }
+    catch {
+        return p;
+    }
+}
+function formatProjectLine(p) {
+    const status = p.worstSeverity === "error"
+        ? "✗"
+        : p.worstSeverity === "warn"
+            ? "!"
+            : p.worstSeverity === "info"
+                ? "i"
+                : "✓";
+    const indexInfo = (() => {
+        if (!p.hasIndex && p.memoryCount === 0)
+            return "no memory";
+        if (!p.hasIndex)
+            return `${p.memoryCount} files, no index`;
+        const sizeStr = p.indexLineCount !== null
+            ? `${p.indexLineCount}L/${p.indexByteSize ?? "?"}B`
+            : `${p.indexByteSize ?? "?"}B`;
+        const tag = p.indexOverCap ? " OVER CAP" : p.indexApproachingCap ? " near cap" : "";
+        return `index ${sizeStr}${tag}, ${p.memoryCount} files`;
+    })();
+    return `  ${status} ${p.slug}  (${indexInfo})`;
+}
+function formatReport(report) {
+    const { totals, projects, nextActions } = report;
+    const lines = [];
+    lines.push(`memex doctor — ${report.generatedAt}`);
+    lines.push("");
+    lines.push(`Scanned ${report.projectsScanned} project(s), parsed ${report.filesScanned} memory file(s).`);
+    lines.push("");
+    // Issues summary
+    lines.push("Issues:");
+    lines.push(`  ${totals.issuesBySeverity.error} error · ${totals.issuesBySeverity.warn} warn · ${totals.issuesBySeverity.info} info`);
+    lines.push("");
+    // Memory counts by type
+    lines.push("Memories by type:");
+    lines.push(`  ${totals.memoriesByType.user} user · ${totals.memoriesByType.feedback} feedback · ${totals.memoriesByType.project} project · ${totals.memoriesByType.reference} reference · ${totals.memoriesByType.untyped} untyped`);
+    lines.push("");
+    // Per-project breakdown
+    lines.push("Projects:");
+    if (projects.length === 0) {
+        lines.push("  (none)");
+    }
+    else {
+        for (const p of projects) {
+            lines.push(formatProjectLine(p));
+            for (const issue of p.issues) {
+                lines.push(`      [${SEV_LABEL[issue.severity]}] ${issue.code}`);
+            }
+        }
+    }
+    lines.push("");
+    // Next actions
+    if (nextActions.length > 0) {
+        lines.push("Next actions:");
+        nextActions.forEach((issue, idx) => {
+            lines.push(`  ${idx + 1}. [${SEV_LABEL[issue.severity]}] ${issue.code} in ${issue.projectSlug}`);
+            lines.push(`     ${issue.message}`);
+            if (issue.filePath)
+                lines.push(`     at: ${shortPath(issue.filePath)}`);
+            if (issue.hint)
+                lines.push(`     hint: ${issue.hint}`);
+        });
+        lines.push("");
+    }
+    // Footer verdict
+    if (totals.issuesBySeverity.error > 0) {
+        lines.push(`✗ Action needed: ${totals.issuesBySeverity.error} error issue(s) — memory currently broken.`);
+    }
+    else if (totals.issuesBySeverity.warn > 0) {
+        lines.push(`! ${totals.issuesBySeverity.warn} warn(s) to look at when you have time.`);
+    }
+    else if (totals.issuesBySeverity.info > 0) {
+        lines.push(`✓ No errors or warnings. ${totals.issuesBySeverity.info} info note(s).`);
+    }
+    else {
+        lines.push("✓ All clear.");
+    }
+    return lines.join("\n") + "\n";
+}
+export function runDoctorCli(argv) {
+    let args;
+    try {
+        args = parseArgs(argv);
+    }
+    catch (err) {
+        process.stderr.write(`memex doctor: ${err instanceof Error ? err.message : String(err)}\n\n${HELP}`);
+        return 2;
+    }
+    if (args.help) {
+        process.stdout.write(HELP);
+        return 0;
+    }
+    const report = runDoctor({
+        projectsRoot: args.root,
+        projectFilter: args.project,
+        onWarning: args.verbose ? (m) => process.stderr.write(`${m}\n`) : undefined,
+    });
+    if (args.json) {
+        process.stdout.write(`${JSON.stringify(report, null, 2)}\n`);
+    }
+    else {
+        process.stdout.write(formatReport(report));
+    }
+    return report.totals.issuesBySeverity.error > 0 ? 1 : 0;
+}
+//# sourceMappingURL=doctor.js.map

package/dist/cli/commands/doctor.js.map

@@ -0,0 +1 @@
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package/dist/cli/commands/lint.d.ts

@@ -0,0 +1 @@
+export declare function runLint(argv: string[]): number;