botholomew 0.11.6 → 0.12.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "botholomew",
-  "version": "0.11.6",
+  "version": "0.12.0",
   "description": "An autonomous AI agent for knowledge work — works your task queue while you sleep.",
   "type": "module",
   "bin": {

package/src/chat/agent.ts

@@ -42,8 +42,7 @@ const CHAT_TOOL_NAMES = new Set([
   "context_read",
   "context_write",
   "context_edit",
-  "search_grep",
-  "search_semantic",
+  "search",
   "list_threads",
   "view_thread",
   "create_schedule",
@@ -134,14 +133,14 @@ Format your responses using Markdown. Use headings, bold, italic, lists, and cod
 
 Workflow for any "look up / find / read" intent:
 
-1. \`search_semantic\` (semantic) or \`context_search\` (keyword), then \`context_read\` / \`context_tree\` to drill in.
+1. \`search\` (hybrid regexp + semantic) or \`context_search\` (keyword), then \`context_read\` / \`context_tree\` to drill in.
 2. If freshness matters, call \`context_info\` and check \`indexed_at\`. To re-pull a single stale item, use \`context_refresh\` rather than going to MCP for the whole document.
 3. Only call \`mcp_exec\` for reads when the data is genuinely missing locally **or** must be real-time (e.g., "what's on my calendar right now").
 
 Writes always go through MCP — sending an email, creating an issue, posting to Slack. Don't search context first for those.
 
 Examples:
-- "What does doc X say?" → \`search_semantic\` first.
+- "What does doc X say?" → \`search\` first.
 - "Any new emails from Y?" → check the \`gmail\` drive first; only hit Gmail MCP if the freshest indexed item is too old for the question.
 - "Send an email to Y" → MCP write directly; no context lookup.
 

package/src/commands/context.ts

@@ -14,7 +14,6 @@ import {
   formatDriveRef,
   parseDriveRef,
 } from "../context/drives.ts";
-import { embedSingle } from "../context/embedder.ts";
 import { FetchFailureError, fetchUrl } from "../context/fetcher.ts";
 import {
   type PreparedIngestion,
@@ -36,14 +35,13 @@ import {
   resolveContextItem,
   upsertContextItem,
 } from "../db/context.ts";
-import { getEmbeddingsForItem, hybridSearch } from "../db/embeddings.ts";
+import { getEmbeddingsForItem } from "../db/embeddings.ts";
 import { reembedMissingVectors } from "../db/reembed.ts";
 import { createMcpxClient } from "../mcpx/client.ts";
+import { searchTool } from "../tools/search/index.ts";
+import type { ToolContext } from "../tools/tool.ts";
 import { logger } from "../utils/logger.ts";
-import {
-  registerContextToolSubcommands,
-  registerSearchToolSubcommands,
-} from "./tools.ts";
+import { registerContextToolSubcommands } from "./tools.ts";
 import { withDb } from "./with-db.ts";
 
 function fmtDate(d: Date): string {
@@ -513,46 +511,82 @@ export function registerContextCommand(program: Command) {
 
   const search = ctx
     .command("search")
-    .description("Search context entries")
-    .argument("[query]", "search query (hybrid keyword + semantic)")
-    .option("-k, --top-k <n>", "max results", Number.parseInt, 10)
+    .description("Search context entries (hybrid regexp + semantic)")
+    .argument(
+      "[query]",
+      "natural-language query (semantic + BM25). Combine with --pattern for fused regexp + semantic ranking.",
+    )
+    .option("-k, --top-k <n>", "max results", Number.parseInt, 20)
+    .option(
+      "--pattern <regex>",
+      "regex pattern (regexp side). May be combined with [query] to fuse signals.",
+    )
+    .option("--drive <drive>", "restrict to a single drive")
+    .option("--path <path>", "directory prefix within drive (requires --drive)")
+    .option("--glob <glob>", "filter results to files whose basename matches")
+    .option("--ignore-case", "case-insensitive regex")
+    .option(
+      "--context <n>",
+      "context lines around each regexp hit",
+      Number.parseInt,
+    )
     .action((query, opts) =>
       withDb(program, async (conn, dir) => {
-        if (!query) {
+        if (!query && !opts.pattern) {
           search.help();
           return;
         }
         const config = await loadConfig(dir);
-        const queryVec = await embedSingle(query, config);
-        const results = await hybridSearch(conn, query, queryVec, opts.topK);
+        const toolCtx: ToolContext = {
+          conn,
+          dbPath: getDbPath(dir),
+          projectDir: dir,
+          config,
+          mcpxClient: null,
+        };
+        const result = await searchTool.execute(
+          {
+            query,
+            pattern: opts.pattern,
+            drive: opts.drive,
+            path: opts.path,
+            glob: opts.glob,
+            ignore_case: opts.ignoreCase,
+            context: opts.context,
+            max_results: opts.topK,
+          },
+          toolCtx,
+        );
 
-        if (results.length === 0) {
+        if (result.is_error) {
+          logger.error(result.message ?? "Search failed");
+          process.exit(1);
+        }
+
+        if (result.matches.length === 0) {
           logger.dim("No results found.");
           return;
         }
 
-        for (const [i, r] of results.entries()) {
-          const score = (r.score * 100).toFixed(1);
-          console.log(
-            `${ansis.bold(`${i + 1}.`)} ${ansis.cyan(r.title)} ${ansis.dim(`(${score}%)`)}`,
-          );
-          const ref =
-            r.drive && r.path
-              ? formatDriveRef({ drive: r.drive, path: r.path })
-              : r.context_item_id;
+        for (const [i, m] of result.matches.entries()) {
+          const tagColor =
+            m.match_type === "both"
+              ? ansis.green
+              : m.match_type === "regexp"
+                ? ansis.yellow
+                : ansis.cyan;
+          const tag = tagColor(`[${m.match_type}]`);
+          const location = m.line != null ? `${m.ref}:${m.line}` : m.ref;
           console.log(
-            `   ${ansis.dim(ref)}  ${ansis.dim(fmtDate(r.created_at))}`,
+            `${ansis.bold(`${i + 1}.`)} ${tag} ${ansis.cyan(location)}  ${ansis.dim(`score=${m.score.toFixed(4)}`)}`,
           );
-          if (r.chunk_content) {
-            const snippet = r.chunk_content.slice(0, 120).replace(/\n/g, " ");
-            console.log(`   ${snippet}...`);
-          }
+          const snippet = m.content.slice(0, 200).replace(/\n/g, " ");
+          if (snippet) console.log(`   ${snippet}`);
           console.log("");
         }
       }),
     );
 
-  registerSearchToolSubcommands(search);
   ctx
     .command("delete <ref>")
     .description("Delete a context entry (UUID or drive:/path)")

package/src/commands/tools.ts

@@ -37,16 +37,6 @@ export function registerContextToolSubcommands(parent: Command) {
   }
 }
 
-/**
- * Register search tool subcommands (grep, semantic) onto an
- * existing Commander command (e.g. the "context search" group).
- */
-export function registerSearchToolSubcommands(parent: Command) {
-  for (const tool of getToolsByGroup("search")) {
-    registerToolAsCLI(parent, tool);
-  }
-}
-
 /** Derive CLI subcommand name from tool name: "context_read" → "read", "context_create_dir" → "create-dir" */
 function deriveSubName(toolName: string): string {
   return toolName.replace(/^[^_]+_/, "").replace(/_/g, "-");
@@ -341,8 +331,6 @@ function isPositionalArg(key: string, toolName: string): boolean {
     context_exists: ["path"],
     context_count_lines: ["path"],
     context_search: ["query"],
-    search_grep: ["pattern"],
-    search_semantic: ["query"],
   };
   return positionalKeys[toolName]?.includes(key) ?? false;
 }

package/src/tools/registry.ts

@@ -31,8 +31,7 @@ import { mcpSearchTool } from "./mcp/search.ts";
 import { createScheduleTool } from "./schedule/create.ts";
 import { listSchedulesTool } from "./schedule/list.ts";
 // Search tools
-import { searchGrepTool } from "./search/grep.ts";
-import { searchSemanticTool } from "./search/semantic.ts";
+import { searchTool } from "./search/index.ts";
 // Skill tools
 import { skillDeleteTool } from "./skill/delete.ts";
 import { skillEditTool } from "./skill/edit.ts";
@@ -96,8 +95,7 @@ export function registerAllTools(): void {
   registerTool(listSchedulesTool);
 
   // Search
-  registerTool(searchGrepTool);
-  registerTool(searchSemanticTool);
+  registerTool(searchTool);
 
   // Skill
   registerTool(skillListTool);

package/src/tools/search/fuse.ts

@@ -0,0 +1,117 @@
+import type { RegexpHit } from "./regexp.ts";
+import type { SemanticHit } from "./semantic.ts";
+
+export interface FusedMatch {
+  ref: string;
+  drive: string;
+  path: string;
+  line: number | null;
+  content: string;
+  context_lines: string[];
+  match_type: "regexp" | "semantic" | "both";
+  semantic_score: number | null;
+  score: number;
+}
+
+const SNIPPET_MAX = 300;
+
+/**
+ * Reciprocal rank fusion of regexp line hits and semantic chunk hits.
+ *
+ * Each regexp hit becomes its own row. If the file (drive + path) also has a
+ * semantic hit, the regexp row picks up that semantic side's RRF contribution
+ * and is tagged `match_type: "both"` — exact-line + semantic agreement is
+ * the strongest signal.
+ *
+ * Semantic hits are emitted as their own rows only for paths with no regexp
+ * hit; otherwise the regexp row already represents that file (and is more
+ * locatable). This keeps the result list focused without losing pure
+ * semantic matches in files the regexp didn't touch.
+ */
+export function fuseRRF(
+  regexpHits: RegexpHit[],
+  semanticHits: SemanticHit[],
+  options: { k?: number; limit: number },
+): FusedMatch[] {
+  const k = options.k ?? 60;
+
+  const bestSemByPath = new Map<
+    string,
+    { rank: number; score: number; hit: SemanticHit }
+  >();
+  for (let i = 0; i < semanticHits.length; i++) {
+    const hit = semanticHits[i];
+    if (!hit) continue;
+    const key = pathKey(hit.drive, hit.path);
+    if (key == null) continue;
+    const existing = bestSemByPath.get(key);
+    if (!existing || i < existing.rank) {
+      bestSemByPath.set(key, { rank: i, score: hit.score, hit });
+    }
+  }
+
+  const regexpPaths = new Set<string>();
+  for (const hit of regexpHits) {
+    regexpPaths.add(pathKey(hit.drive, hit.path) ?? "");
+  }
+
+  const fused: FusedMatch[] = [];
+
+  for (let i = 0; i < regexpHits.length; i++) {
+    const rx = regexpHits[i];
+    if (!rx) continue;
+    const key = pathKey(rx.drive, rx.path) ?? "";
+    const sem = bestSemByPath.get(key);
+    let score = 1 / (k + i + 1);
+    let matchType: FusedMatch["match_type"] = "regexp";
+    let semanticScore: number | null = null;
+    if (sem) {
+      score += 1 / (k + sem.rank + 1);
+      matchType = "both";
+      semanticScore = round(sem.score);
+    }
+    fused.push({
+      ref: rx.ref,
+      drive: rx.drive,
+      path: rx.path,
+      line: rx.line,
+      content: rx.content,
+      context_lines: rx.context_lines,
+      match_type: matchType,
+      semantic_score: semanticScore,
+      score: round(score),
+    });
+  }
+
+  for (let i = 0; i < semanticHits.length; i++) {
+    const sem = semanticHits[i];
+    if (!sem) continue;
+    const key = pathKey(sem.drive, sem.path);
+    if (key == null) continue;
+    if (regexpPaths.has(key)) continue;
+    const score = 1 / (k + i + 1);
+    fused.push({
+      ref: sem.ref,
+      drive: sem.drive ?? "",
+      path: sem.path ?? "",
+      line: null,
+      content: sem.chunk_content.slice(0, SNIPPET_MAX),
+      context_lines: [],
+      match_type: "semantic",
+      semantic_score: round(sem.score),
+      score: round(score),
+    });
+  }
+
+  fused.sort((a, b) => b.score - a.score);
+  return fused.slice(0, options.limit);
+}
+
+function pathKey(drive: string | null, path: string | null): string | null {
+  if (!drive || !path) return null;
+  return `${drive}:${path}`;
+}
+
+function round(n: number): number {
+  return Math.round(n * 10000) / 10000;
+}

package/src/tools/search/index.ts

@@ -0,0 +1,134 @@
+import { z } from "zod";
+import {
+  listContextItems,
+  listContextItemsByPrefix,
+} from "../../db/context.ts";
+import type { ToolDefinition } from "../tool.ts";
+import { fuseRRF } from "./fuse.ts";
+import { runRegexp } from "./regexp.ts";
+import { runSemantic } from "./semantic.ts";
+
+const MatchSchema = z.object({
+  ref: z.string(),
+  drive: z.string(),
+  path: z.string(),
+  line: z.number().nullable(),
+  content: z.string(),
+  context_lines: z.array(z.string()),
+  match_type: z.enum(["regexp", "semantic", "both"]),
+  semantic_score: z.number().nullable(),
+  score: z.number(),
+});
+
+const inputSchema = z.object({
+  query: z
+    .string()
+    .optional()
+    .describe(
+      "Natural-language query for semantic + keyword (BM25) hybrid search. Provide alongside `pattern` for the strongest signal — chunks matched by both methods are boosted via reciprocal rank fusion.",
+    ),
+  pattern: z
+    .string()
+    .optional()
+    .describe("Regex pattern for exact text search across context contents."),
+  drive: z
+    .string()
+    .optional()
+    .describe(
+      "Restrict to a single drive (applies to both `query` and `pattern`).",
+    ),
+  path: z
+    .string()
+    .optional()
+    .describe("Directory prefix within the drive. Requires `drive`."),
+  glob: z
+    .string()
+    .optional()
+    .describe("Filter results to files whose basename matches this glob."),
+  ignore_case: z
+    .boolean()
+    .optional()
+    .describe("Case-insensitive regex (only affects `pattern`)."),
+  context: z
+    .number()
+    .optional()
+    .describe(
+      "Lines of surrounding context to include for each regex hit (only affects `pattern`).",
+    ),
+  max_results: z
+    .number()
+    .optional()
+    .describe("Maximum number of fused results to return (default 20)."),
+});
+
+const outputSchema = z.object({
+  matches: z.array(MatchSchema),
+  is_error: z.boolean(),
+  error_type: z.string().optional(),
+  message: z.string().optional(),
+});
+
+export const searchTool = {
+  name: "search",
+  description:
+    "[[ bash equivalent command: grep -r ]] Hybrid search over indexed context. At least one of `query` (natural language → semantic + BM25) or `pattern` (regex over file contents) is required. Pass both for the strongest signal: results matched by both methods float to the top via reciprocal rank fusion. Scoping (`drive`, `path`, `glob`) applies to both sides.",
+  group: "search",
+  inputSchema,
+  outputSchema,
+  execute: async (input, ctx) => {
+    if (!input.query && !input.pattern) {
+      return {
+        matches: [],
+        is_error: true,
+        error_type: "invalid_arguments",
+        message:
+          "Provide at least one of `query` (natural language) or `pattern` (regex). Pass both to fuse semantic and exact-match signals.",
+      };
+    }
+    if (input.path && !input.drive) {
+      return {
+        matches: [],
+        is_error: true,
+        error_type: "invalid_arguments",
+        message:
+          "`path` requires `drive` — call context_list_drives to see which drives exist, then pass `drive` alongside `path`.",
+      };
+    }
+
+    const limit = input.max_results ?? 20;
+
+    const regexpHits = input.pattern
+      ? runRegexp(
+          input.drive
+            ? await listContextItemsByPrefix(
+                ctx.conn,
+                input.drive,
+                input.path ?? "/",
+                { recursive: true },
+              )
+            : await listContextItems(ctx.conn),
+          {
+            pattern: input.pattern,
+            glob: input.glob,
+            ignore_case: input.ignore_case,
+            context: input.context,
+            max_results: 100,
+          },
+        )
+      : [];
+
+    const semanticHits = input.query
+      ? await runSemantic(ctx, {
+          query: input.query,
+          drive: input.drive,
+          path: input.path,
+          glob: input.glob,
+          limit: 100,
+        })
+      : [];
+
+    const matches = fuseRRF(regexpHits, semanticHits, { limit });
+
+    return { matches, is_error: false };
+  },
+} satisfies ToolDefinition<typeof inputSchema, typeof outputSchema>;

package/src/tools/search/regexp.ts

@@ -0,0 +1,70 @@
+import { formatDriveRef } from "../../context/drives.ts";
+import type { ContextItem } from "../../db/context.ts";
+
+export interface RegexpHit {
+  ref: string;
+  drive: string;
+  path: string;
+  line: number;
+  content: string;
+  context_lines: string[];
+}
+
+export interface RegexpOptions {
+  pattern: string;
+  glob?: string;
+  ignore_case?: boolean;
+  context?: number;
+  max_results?: number;
+}
+
+export function runRegexp(
+  items: ContextItem[],
+  options: RegexpOptions,
+): RegexpHit[] {
+  const flags = options.ignore_case ? "gi" : "g";
+  const regex = new RegExp(options.pattern, flags);
+  const globRegex = options.glob ? globToRegex(options.glob) : null;
+  const contextLines = options.context ?? 0;
+  const maxResults = options.max_results ?? 100;
+
+  const hits: RegexpHit[] = [];
+
+  for (const item of items) {
+    if (item.content == null) continue;
+
+    if (globRegex) {
+      const filename = item.path.split("/").pop() ?? "";
+      if (!globRegex.test(filename)) continue;
+    }
+
+    const lines = item.content.split("\n");
+    for (let i = 0; i < lines.length; i++) {
+      regex.lastIndex = 0;
+      const line = lines[i];
+      if (line !== undefined && regex.test(line)) {
+        const start = Math.max(0, i - contextLines);
+        const end = Math.min(lines.length, i + contextLines + 1);
+        hits.push({
+          ref: formatDriveRef(item),
+          drive: item.drive,
+          path: item.path,
+          line: i + 1,
+          content: line,
+          context_lines: lines.slice(start, end),
+        });
+        if (hits.length >= maxResults) return hits;
+      }
+    }
+  }
+
+  return hits;
+}
+
+export function globToRegex(glob: string): RegExp {
+  const escaped = glob
+    .replace(/[.+^${}()|[\]\\]/g, "\\$&")
+    .replace(/\*/g, ".*")
+    .replace(/\?/g, ".");
+  return new RegExp(`^${escaped}$`, "i");
+}

package/src/tools/search/semantic.ts

@@ -1,69 +1,81 @@
-import { z } from "zod";
 import { formatDriveRef } from "../../context/drives.ts";
 import { embedSingle } from "../../context/embedder.ts";
-import { hybridSearch } from "../../db/embeddings.ts";
-import type { ToolDefinition } from "../tool.ts";
+import { type HybridSearchResult, hybridSearch } from "../../db/embeddings.ts";
+import type { ToolContext } from "../tool.ts";
+import { globToRegex } from "./regexp.ts";
 
-const inputSchema = z.object({
-  query: z.string().describe("Natural language search query"),
-  top_k: z
-    .number()
-    .optional()
-    .default(10)
-    .describe("Maximum number of results to return (defaults to 10)"),
-  threshold: z
-    .number()
-    .optional()
-    .describe("Minimum similarity score (0-1) to include in results"),
-});
+export interface SemanticHit {
+  ref: string;
+  drive: string | null;
+  path: string | null;
+  context_item_id: string;
+  chunk_index: number;
+  title: string;
+  chunk_content: string;
+  score: number;
+}
 
-const outputSchema = z.object({
-  results: z.array(
-    z.object({
-      ref: z.string(),
-      title: z.string(),
-      score: z.number(),
-      snippet: z.string(),
-    }),
-  ),
-  is_error: z.boolean(),
-});
+export interface SemanticOptions {
+  query: string;
+  drive?: string;
+  path?: string;
+  glob?: string;
+  limit?: number;
+}
 
-export const searchSemanticTool = {
-  name: "search_semantic",
-  description:
-    "Semantic search over indexed context using vector embeddings. Finds conceptually related content, not just keyword matches.",
-  group: "search",
-  inputSchema,
-  outputSchema,
-  execute: async (input, ctx) => {
-    const queryVec = await embedSingle(input.query, ctx.config);
-    const results = await hybridSearch(
-      ctx.conn,
-      input.query,
-      queryVec,
-      input.top_k,
-    );
+/**
+ * Run the embedding + hybrid-search pipeline. Scoping (`drive` / `path` /
+ * `glob`) is applied as a *post-filter* on results so the caller gets
+ * consistent behavior whether they used the regex side, the semantic side,
+ * or both.
+ */
+export async function runSemantic(
+  ctx: ToolContext,
+  options: SemanticOptions,
+): Promise<SemanticHit[]> {
+  const queryVec = await embedSingle(options.query, ctx.config);
+  const results = await hybridSearch(
+    ctx.conn,
+    options.query,
+    queryVec,
+    options.limit ?? 100,
+  );
 
-    const threshold = input.threshold;
-    const filtered =
-      threshold !== undefined
-        ? results.filter((r) => r.score >= threshold)
-        : results;
+  return results.filter((r) => matchesScope(r, options)).map(toHit);
+}
 
-    return {
-      results: filtered
-        .map((r) => ({
-          ref:
-            r.drive && r.path
-              ? formatDriveRef({ drive: r.drive, path: r.path })
-              : r.context_item_id,
-          title: r.title,
-          score: Math.round(r.score * 1000) / 1000,
-          snippet: (r.chunk_content || "").slice(0, 300),
-        }))
-        .sort((a, b) => b.score - a.score),
-      is_error: false,
-    };
-  },
-} satisfies ToolDefinition<typeof inputSchema, typeof outputSchema>;
+function matchesScope(
+  result: HybridSearchResult,
+  options: SemanticOptions,
+): boolean {
+  if (options.drive && result.drive !== options.drive) return false;
+  if (options.path && result.path) {
+    const prefix = options.path.endsWith("/")
+      ? options.path
+      : `${options.path}/`;
+    if (result.path !== options.path && !result.path.startsWith(prefix)) {
+      return false;
+    }
+  }
+  if (options.glob && result.path) {
+    const filename = result.path.split("/").pop() ?? "";
+    if (!globToRegex(options.glob).test(filename)) return false;
+  }
+  return true;
+}
+
+function toHit(r: HybridSearchResult): SemanticHit {
+  return {
+    ref:
+      r.drive && r.path
+        ? formatDriveRef({ drive: r.drive, path: r.path })
+        : r.context_item_id,
+    drive: r.drive,
+    path: r.path,
+    context_item_id: r.context_item_id,
+    chunk_index: r.chunk_index,
+    title: r.title,
+    chunk_content: r.chunk_content ?? "",
+    score: r.score,
+  };
+}

package/src/worker/prompt.ts

@@ -145,14 +145,14 @@ When calling complete_task, write a summary that captures your key findings, dec
 
 Workflow for any "look up / find / read" intent:
 
-1. \`search_semantic\` (semantic) or \`context_search\` (keyword), then \`context_read\` / \`context_tree\` to drill in.
+1. \`search\` (hybrid regexp + semantic) or \`context_search\` (keyword), then \`context_read\` / \`context_tree\` to drill in.
 2. If freshness matters, call \`context_info\` and check \`indexed_at\`. To re-pull a single stale item, use \`context_refresh\` rather than going to MCP for the whole document.
 3. Only call \`mcp_exec\` for reads when the data is genuinely missing locally **or** must be real-time (e.g., "what's on my calendar right now").
 
 Writes always go through MCP — sending an email, creating an issue, posting to Slack. Don't search context first for those.
 
 Examples:
-- "What does doc X say?" → \`search_semantic\` first.
+- "What does doc X say?" → \`search\` first.
 - "Any new emails from Y?" → check the \`gmail\` drive first; only hit Gmail MCP if the freshest indexed item is too old for the question.
 - "Send an email to Y" → MCP write directly; no context lookup.
 

package/src/tools/search/grep.ts

@@ -1,128 +0,0 @@
-import { z } from "zod";
-import { formatDriveRef } from "../../context/drives.ts";
-import {
-  listContextItems,
-  listContextItemsByPrefix,
-} from "../../db/context.ts";
-import type { ToolDefinition } from "../tool.ts";
-
-const GrepMatchSchema = z.object({
-  ref: z.string(),
-  drive: z.string(),
-  path: z.string(),
-  line: z.number(),
-  content: z.string(),
-  context_lines: z.array(z.string()),
-});
-
-const inputSchema = z.object({
-  pattern: z.string().describe("Regex pattern to search for"),
-  drive: z
-    .string()
-    .optional()
-    .describe("Restrict search to a single drive (defaults to all drives)"),
-  path: z
-    .string()
-    .optional()
-    .describe(
-      "Directory to search under within the drive (defaults to /). Requires `drive`.",
-    ),
-  glob: z
-    .string()
-    .optional()
-    .describe("Only search files whose basename matches this glob pattern"),
-  ignore_case: z.boolean().optional().describe("Case-insensitive search"),
-  context: z
-    .number()
-    .optional()
-    .describe("Number of context lines before and after each match"),
-  max_results: z
-    .number()
-    .optional()
-    .describe("Maximum number of matches to return"),
-});
-
-const outputSchema = z.object({
-  matches: z.array(GrepMatchSchema),
-  is_error: z.boolean(),
-  error_type: z.string().optional(),
-  message: z.string().optional(),
-});
-
-export const searchGrepTool = {
-  name: "search_grep",
-  description: "Search file contents by regex pattern across context drives.",
-  group: "search",
-  inputSchema,
-  outputSchema,
-  execute: async (input, ctx) => {
-    // `path` scopes to a directory within a single drive; requiring `drive`
-    // alongside prevents a silent full-DB scan when only `path` is passed.
-    if (input.path && !input.drive) {
-      return {
-        matches: [],
-        is_error: true,
-        error_type: "invalid_arguments",
-        message:
-          "`path` requires `drive` — use context_list_drives to see which drives exist, then pass `drive` alongside `path`.",
-      };
-    }
-
-    const items = input.drive
-      ? await listContextItemsByPrefix(
-          ctx.conn,
-          input.drive,
-          input.path ?? "/",
-          {
-            recursive: true,
-          },
-        )
-      : await listContextItems(ctx.conn);
-
-    const flags = input.ignore_case ? "gi" : "g";
-    const regex = new RegExp(input.pattern, flags);
-    const globRegex = input.glob ? globToRegex(input.glob) : null;
-    const contextLines = input.context ?? 0;
-    const maxResults = input.max_results ?? 100;
-
-    const matches: z.infer<typeof GrepMatchSchema>[] = [];
-
-    for (const item of items) {
-      if (item.content == null) continue;
-
-      if (globRegex) {
-        const filename = item.path.split("/").pop() ?? "";
-        if (!globRegex.test(filename)) continue;
-      }
-
-      const lines = item.content.split("\n");
-      for (let i = 0; i < lines.length; i++) {
-        regex.lastIndex = 0;
-        const line = lines[i];
-        if (line !== undefined && regex.test(line)) {
-          const start = Math.max(0, i - contextLines);
-          const end = Math.min(lines.length, i + contextLines + 1);
-          matches.push({
-            ref: formatDriveRef(item),
-            drive: item.drive,
-            path: item.path,
-            line: i + 1,
-            content: line,
-            context_lines: lines.slice(start, end),
-          });
-          if (matches.length >= maxResults) return { matches, is_error: false };
-        }
-      }
-    }
-
-    return { matches, is_error: false };
-  },
-} satisfies ToolDefinition<typeof inputSchema, typeof outputSchema>;
-
-function globToRegex(glob: string): RegExp {
-  const escaped = glob
-    .replace(/[.+^${}()|[\]\\]/g, "\\$&")
-    .replace(/\*/g, ".*")
-    .replace(/\?/g, ".");
-  return new RegExp(`^${escaped}$`, "i");
-}