@zigrivers/scaffold 3.17.0 → 3.18.1

package/dist/core/assembly/overlay-resolver.test.js

@@ -9,6 +9,7 @@ function makeOverlay(overrides = {}) {
         knowledgeOverrides: {},
         readsOverrides: {},
         dependencyOverrides: {},
+        crossReadsOverrides: {},
         ...overrides,
     };
 }
@@ -25,7 +26,7 @@ describe('applyOverlay', () => {
                     'game-design-document': { enabled: true },
                 },
             });
-            const result = applyOverlay(steps, {}, {}, {}, overlay);
+            const result = applyOverlay(steps, {}, {}, {}, {}, overlay);
             expect(result.steps['design-system']).toEqual({ enabled: false });
             expect(result.steps['game-design-document']).toEqual({ enabled: true });
             expect(result.steps['create-prd']).toEqual({ enabled: true });
@@ -39,7 +40,7 @@ describe('applyOverlay', () => {
                     'step-a': { enabled: false },
                 },
             });
-            const result = applyOverlay(steps, {}, {}, {}, overlay);
+            const result = applyOverlay(steps, {}, {}, {}, {}, overlay);
             expect(result.steps['step-a']).toEqual({ enabled: false, conditional: 'if-needed' });
         });
         it('preserves conditional field from overlay', () => {
@@ -51,7 +52,7 @@ describe('applyOverlay', () => {
                     'optional-step': { enabled: true, conditional: 'if-needed' },
                 },
             });
-            const result = applyOverlay(steps, {}, {}, {}, overlay);
+            const result = applyOverlay(steps, {}, {}, {}, {}, overlay);
             expect(result.steps['optional-step']).toEqual({ enabled: true, conditional: 'if-needed' });
         });
     });
@@ -65,7 +66,7 @@ describe('applyOverlay', () => {
                     'tech-stack': { append: ['game-engine-selection'] },
                 },
             });
-            const result = applyOverlay({}, knowledgeMap, {}, {}, overlay);
+            const result = applyOverlay({}, knowledgeMap, {}, {}, {}, overlay);
             expect(result.knowledge['tech-stack']).toEqual([
                 'tech-stack-selection',
                 'game-engine-selection',
@@ -80,7 +81,7 @@ describe('applyOverlay', () => {
                     'tech-stack': { append: ['game-engine-selection'] },
                 },
             });
-            const result = applyOverlay({}, knowledgeMap, {}, {}, overlay);
+            const result = applyOverlay({}, knowledgeMap, {}, {}, {}, overlay);
             expect(result.knowledge['tech-stack']).toEqual([
                 'tech-stack-selection',
                 'game-engine-selection',
@@ -97,7 +98,7 @@ describe('applyOverlay', () => {
                     'story-tests': { replace: { 'ux-spec': 'game-ui-spec' } },
                 },
             });
-            const result = applyOverlay({}, {}, readsMap, {}, overlay);
+            const result = applyOverlay({}, {}, readsMap, {}, {}, overlay);
             expect(result.reads['story-tests']).toEqual(['game-ui-spec', 'user-stories']);
         });
         it('appends new reads entries', () => {
@@ -109,7 +110,7 @@ describe('applyOverlay', () => {
                     'story-tests': { append: ['game-mechanics'] },
                 },
             });
-            const result = applyOverlay({}, {}, readsMap, {}, overlay);
+            const result = applyOverlay({}, {}, readsMap, {}, {}, overlay);
             expect(result.reads['story-tests']).toEqual(['ux-spec', 'game-mechanics']);
         });
         it('deduplicates after replace and append', () => {
@@ -124,7 +125,7 @@ describe('applyOverlay', () => {
                     },
                 },
             });
-            const result = applyOverlay({}, {}, readsMap, {}, overlay);
+            const result = applyOverlay({}, {}, readsMap, {}, {}, overlay);
             // user-stories should appear only once
             expect(result.reads['story-tests']).toEqual(['user-stories']);
         });
@@ -139,7 +140,7 @@ describe('applyOverlay', () => {
                     'user-stories': { append: ['review-gdd'] },
                 },
             });
-            const result = applyOverlay({}, {}, {}, dependencyMap, overlay);
+            const result = applyOverlay({}, {}, {}, dependencyMap, {}, overlay);
             expect(result.dependencies['user-stories']).toEqual(['review-prd', 'review-gdd']);
         });
         it('replaces dependencies', () => {
@@ -151,7 +152,7 @@ describe('applyOverlay', () => {
                     'user-stories': { replace: { 'review-prd': 'review-gdd' } },
                 },
             });
-            const result = applyOverlay({}, {}, {}, dependencyMap, overlay);
+            const result = applyOverlay({}, {}, {}, dependencyMap, {}, overlay);
             expect(result.dependencies['user-stories']).toEqual(['review-gdd']);
         });
         it('deduplicates after replace and append', () => {
@@ -166,7 +167,7 @@ describe('applyOverlay', () => {
                     },
                 },
             });
-            const result = applyOverlay({}, {}, {}, dependencyMap, overlay);
+            const result = applyOverlay({}, {}, {}, dependencyMap, {}, overlay);
             expect(result.dependencies['user-stories']).toEqual(['review-gdd']);
         });
     });
@@ -177,7 +178,7 @@ describe('applyOverlay', () => {
             const reads = { 'story-tests': ['ux-spec'] };
             const deps = { 'user-stories': ['review-prd'] };
             const overlay = makeOverlay();
-            const result = applyOverlay(steps, knowledge, reads, deps, overlay);
+            const result = applyOverlay(steps, knowledge, reads, deps, {}, overlay);
             expect(result.steps).toEqual(steps);
             expect(result.knowledge).toEqual(knowledge);
             expect(result.reads).toEqual(reads);
@@ -190,7 +191,7 @@ describe('applyOverlay', () => {
             const overlay = makeOverlay({
                 stepOverrides: { 'totally-new-step': { enabled: true } },
             });
-            const result = applyOverlay(steps, {}, {}, {}, overlay);
+            const result = applyOverlay(steps, {}, {}, {}, {}, overlay);
             expect(result.steps['totally-new-step']).toEqual({ enabled: true });
             expect(result.steps['create-prd']).toEqual({ enabled: true });
         });
@@ -200,7 +201,7 @@ describe('applyOverlay', () => {
                     'new-step': { append: ['new-knowledge'] },
                 },
             });
-            const result = applyOverlay({}, {}, {}, {}, overlay);
+            const result = applyOverlay({}, {}, {}, {}, {}, overlay);
             expect(result.knowledge['new-step']).toEqual(['new-knowledge']);
         });
         it('silently adds reads for unknown steps', () => {
@@ -209,7 +210,7 @@ describe('applyOverlay', () => {
                     'new-step': { append: ['some-doc'] },
                 },
             });
-            const result = applyOverlay({}, {}, {}, {}, overlay);
+            const result = applyOverlay({}, {}, {}, {}, {}, overlay);
             expect(result.reads['new-step']).toEqual(['some-doc']);
         });
         it('silently adds dependencies for unknown steps', () => {
@@ -218,7 +219,7 @@ describe('applyOverlay', () => {
                     'new-step': { append: ['some-dep'] },
                 },
             });
-            const result = applyOverlay({}, {}, {}, {}, overlay);
+            const result = applyOverlay({}, {}, {}, {}, {}, overlay);
             expect(result.dependencies['new-step']).toEqual(['some-dep']);
         });
     });
@@ -234,7 +235,7 @@ describe('applyOverlay', () => {
                 readsOverrides: { 'story-tests': { append: ['new-read'] } },
                 dependencyOverrides: { 'user-stories': { append: ['new-dep'] } },
             });
-            applyOverlay(steps, knowledge, reads, deps, overlay);
+            applyOverlay(steps, knowledge, reads, deps, {}, overlay);
             // Original inputs should be unchanged
             expect(steps).toEqual({ 'create-prd': { enabled: true } });
             expect(knowledge).toEqual({ 'tech-stack': ['tech-stack-selection'] });
@@ -243,4 +244,121 @@ describe('applyOverlay', () => {
         });
     });
 });
+describe('applyOverlay crossReads (Wave 3c+1)', () => {
+    function baseOverlay() {
+        return {
+            name: 'test',
+            description: 'desc',
+            stepOverrides: {},
+            knowledgeOverrides: {},
+            readsOverrides: {},
+            dependencyOverrides: {},
+            crossReadsOverrides: {},
+        };
+    }
+    it('appends to empty crossReadsMap[step]', () => {
+        const result = applyOverlay({}, {}, {}, {}, {}, // empty crossReadsMap
+        {
+            ...baseOverlay(),
+            crossReadsOverrides: {
+                'system-architecture': {
+                    append: [{ service: 'billing', step: 'api-contracts' }],
+                },
+            },
+        });
+        expect(result.crossReads['system-architecture']).toEqual([
+            { service: 'billing', step: 'api-contracts' },
+        ]);
+    });
+    it('appends to existing frontmatter crossReads (preserves originals + adds new)', () => {
+        const result = applyOverlay({}, {}, {}, {}, {
+            'system-architecture': [{ service: 'shared-lib', step: 'api-contracts' }],
+        }, {
+            ...baseOverlay(),
+            crossReadsOverrides: {
+                'system-architecture': {
+                    append: [{ service: 'billing', step: 'api-contracts' }],
+                },
+            },
+        });
+        expect(result.crossReads['system-architecture']).toEqual([
+            { service: 'shared-lib', step: 'api-contracts' },
+            { service: 'billing', step: 'api-contracts' },
+        ]);
+    });
+    it('dedupes by service:step pair (preserving first occurrence)', () => {
+        const result = applyOverlay({}, {}, {}, {}, {
+            'system-architecture': [{ service: 'shared-lib', step: 'api-contracts' }],
+        }, {
+            ...baseOverlay(),
+            crossReadsOverrides: {
+                'system-architecture': {
+                    append: [
+                        { service: 'shared-lib', step: 'api-contracts' }, // duplicate of frontmatter
+                        { service: 'billing', step: 'api-contracts' }, // new
+                    ],
+                },
+            },
+        });
+        expect(result.crossReads['system-architecture']).toEqual([
+            { service: 'shared-lib', step: 'api-contracts' }, // first occurrence
+            { service: 'billing', step: 'api-contracts' },
+        ]);
+    });
+    it('first-occurrence dedup: interleaved duplicates preserve insertion order', () => {
+        // frontmatter: [A]
+        // append: [B, A-dup, C]  (A-dup comes after B in the merged list)
+        // First-occurrence result: [A, B, C]  — A kept from frontmatter (earliest)
+        // Last-occurrence result would be:    [B, A, C]  — different order
+        // This test distinguishes the two dedup strategies by ordering.
+        const result = applyOverlay({}, {}, {}, {}, {
+            'system-architecture': [{ service: 'shared-lib', step: 'api-contracts' }],
+        }, {
+            ...baseOverlay(),
+            crossReadsOverrides: {
+                'system-architecture': {
+                    append: [
+                        { service: 'billing', step: 'api-contracts' },
+                        { service: 'shared-lib', step: 'api-contracts' }, // dup of frontmatter's A
+                        { service: 'inventory', step: 'domain-modeling' },
+                    ],
+                },
+            },
+        });
+        // Must be [A, B, C], not [B, A, C]
+        expect(result.crossReads['system-architecture']).toEqual([
+            { service: 'shared-lib', step: 'api-contracts' }, // A — first, from frontmatter
+            { service: 'billing', step: 'api-contracts' }, // B
+            { service: 'inventory', step: 'domain-modeling' }, // C
+        ]);
+    });
+    it('result entries are deep copies — mutating result does not affect inputs', () => {
+        const frontmatterEntry = { service: 'shared-lib', step: 'api-contracts' };
+        const frontmatterMap = { 'system-architecture': [frontmatterEntry] };
+        const appendEntry = { service: 'billing', step: 'api-contracts' };
+        const result = applyOverlay({}, {}, {}, {}, frontmatterMap, {
+            ...baseOverlay(),
+            crossReadsOverrides: {
+                'system-architecture': { append: [appendEntry] },
+            },
+        });
+        // Mutate the returned entries
+        result.crossReads['system-architecture'][0].service = 'mutated';
+        result.crossReads['system-architecture'][1].service = 'mutated';
+        // Inputs must be untouched (deep-copy guarantee)
+        expect(frontmatterEntry.service).toBe('shared-lib');
+        expect(appendEntry.service).toBe('billing');
+    });
+    it('applies overrides across multiple steps without cross-contamination', () => {
+        const result = applyOverlay({}, {}, {}, {}, {}, {
+            ...baseOverlay(),
+            crossReadsOverrides: {
+                'system-architecture': { append: [{ service: 'a', step: 'x' }] },
+                'api-contracts': { append: [{ service: 'b', step: 'y' }] },
+            },
+        });
+        expect(result.crossReads['system-architecture']).toEqual([{ service: 'a', step: 'x' }]);
+        expect(result.crossReads['api-contracts']).toEqual([{ service: 'b', step: 'y' }]);
+    });
+});
 //# sourceMappingURL=overlay-resolver.test.js.map

package/dist/core/assembly/overlay-resolver.test.js.map

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package/dist/core/assembly/overlay-state-resolver.d.ts

@@ -6,8 +6,12 @@ export interface OverlayState {
     knowledge: Record<string, string[]>;
     reads: Record<string, string[]>;
     dependencies: Record<string, string[]>;
-    /** Wave 3c — populated from frontmatter.crossReads; overlay-level overrides are post-release. */
-    crossReads?: Record<string, Array<{
+    /**
+     * Cross-reads for each step (keyed by step slug). Populated via overlay-first
+     * merge: `frontmatter.crossReads ∪ overlay.cross-reads-overrides` (spec §3.2).
+     * Consumers can read `overlay.crossReads[slug]` as authoritative.
+     */
+    crossReads: Record<string, Array<{
         service: string;
         step: string;
     }>>;

package/dist/core/assembly/overlay-state-resolver.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"overlay-state-resolver.d.ts","sourceRoot":"","sources":["../../../src/core/assembly/overlay-state-resolver.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,cAAc,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAA;AAC/E,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAA;AACvE,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,6BAA6B,CAAA;AAIhE,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,mBAAmB,CAAC,CAAA;IAC1C,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;IACnC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;IAC/B,YAAY,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;IACtC,iGAAiG;IACjG,UAAU,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC,CAAA;CACtE;AAED;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE;IAC3C,MAAM,EAAE,cAAc,CAAA;IACtB,cAAc,EAAE,MAAM,CAAA;IACtB,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE;QAAE,WAAW,EAAE,qBAAqB,CAAA;KAAE,CAAC,CAAA;IAChE,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,mBAAmB,CAAC,CAAA;IAChD,MAAM,EAAE,aAAa,CAAA;CACtB,GAAG,YAAY,CA4If"}
+{"version":3,"file":"overlay-state-resolver.d.ts","sourceRoot":"","sources":["../../../src/core/assembly/overlay-state-resolver.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,cAAc,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAA;AAC/E,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAA;AACvE,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,6BAA6B,CAAA;AAIhE,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,mBAAmB,CAAC,CAAA;IAC1C,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;IACnC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;IAC/B,YAAY,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAA;IACtC;;;;OAIG;IACH,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC,CAAA;CACrE;AAED;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE;IAC3C,MAAM,EAAE,cAAc,CAAA;IACtB,cAAc,EAAE,MAAM,CAAA;IACtB,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE;QAAE,WAAW,EAAE,qBAAqB,CAAA;KAAE,CAAC,CAAA;IAChE,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,mBAAmB,CAAC,CAAA;IAChD,MAAM,EAAE,aAAa,CAAA;CACtB,GAAG,YAAY,CAmJf"}

package/dist/core/assembly/overlay-state-resolver.js

@@ -15,20 +15,19 @@ export function resolveOverlayState(options) {
     const knowledgeMap = {};
     const readsMap = {};
     const dependencyMap = {};
-    // Wave 3c: crossReads is an OVERLAY-OVERRIDE seam (empty until the follow-on
-    // 'crossReads-overrides' feature lands). Consumers read frontmatter via the
-    // overlay-first fallback: `overlay.crossReads?.[slug] ?? frontmatter.crossReads`.
     const crossReadsMap = {};
     for (const [name, mp] of metaPrompts) {
         knowledgeMap[name] = [...(mp.frontmatter.knowledgeBase ?? [])];
         readsMap[name] = [...(mp.frontmatter.reads ?? [])];
         dependencyMap[name] = [...(mp.frontmatter.dependencies ?? [])];
+        crossReadsMap[name] = [...(mp.frontmatter.crossReads ?? [])];
     }
     // Start with preset defaults
     let overlaySteps = { ...presetSteps };
     let overlayKnowledge = knowledgeMap;
     let overlayReads = readsMap;
     let overlayDependencies = dependencyMap;
+    let overlayCrossReads = crossReadsMap;
     // Load and apply project-type overlay if configured
     const projectType = config.project?.projectType;
     if (projectType) {
@@ -48,11 +47,16 @@ export function resolveOverlayState(options) {
                 }
             }
             if (overlay) {
-                const merged = applyOverlay(overlaySteps, knowledgeMap, readsMap, dependencyMap, overlay);
+                // Use the tracked overlay* working variables uniformly (parity with the
+                // structural-overlay pass below). At this point the working vars are
+                // reference-identical to the frontmatter maps, so behavior is unchanged;
+                // the symmetry avoids a footgun if a future pre-pass mutates the vars.
+                const merged = applyOverlay(overlaySteps, overlayKnowledge, overlayReads, overlayDependencies, overlayCrossReads, overlay);
                 overlaySteps = merged.steps;
                 overlayKnowledge = merged.knowledge;
                 overlayReads = merged.reads;
                 overlayDependencies = merged.dependencies;
+                overlayCrossReads = merged.crossReads;
             }
         }
         // Generic domain sub-overlay: types with a 'domain' config field get sub-overlay injection
@@ -113,11 +117,12 @@ export function resolveOverlayState(options) {
                         output.warn(`Structural overlay targets unknown step "${step}"`);
                     }
                 }
-                const merged = applyOverlay(overlaySteps, overlayKnowledge, overlayReads, overlayDependencies, msOverlay);
+                const merged = applyOverlay(overlaySteps, overlayKnowledge, overlayReads, overlayDependencies, overlayCrossReads, msOverlay);
                 overlaySteps = merged.steps;
                 overlayKnowledge = merged.knowledge;
                 overlayReads = merged.reads;
                 overlayDependencies = merged.dependencies;
+                overlayCrossReads = merged.crossReads;
             }
         }
     }
@@ -126,7 +131,7 @@ export function resolveOverlayState(options) {
         knowledge: overlayKnowledge,
         reads: overlayReads,
         dependencies: overlayDependencies,
-        crossReads: crossReadsMap,
+        crossReads: overlayCrossReads,
     };
 }
 //# sourceMappingURL=overlay-state-resolver.js.map

package/dist/core/assembly/overlay-state-resolver.js.map

@@ -1 +1 @@
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package/dist/core/assembly/overlay-state-resolver.test.js

@@ -557,10 +557,10 @@ step-overrides:
     });
 });
 describe('crossReads on OverlayState (Wave 3c)', () => {
-    // Per spec §2.1, crossReads is an OVERLAY-OVERRIDE seam (empty until the
-    // follow-on 'crossReads-overrides' feature lands). Consumers use the
-    // overlay-first fallback: `overlay.crossReads?.[slug] ?? frontmatter.crossReads`.
-    it('returns crossReads as empty object even when frontmatter has crossReads', () => {
+    // With Wave 3c+1, resolveOverlayState populates OverlayState.crossReads from
+    // frontmatter merged with any overlay cross-reads-overrides. Consumers should
+    // read `overlay.crossReads?.[slug]` as authoritative.
+    it('returns crossReads populated from frontmatter when no overlay overrides configured', () => {
         const metaPrompts = new Map([
             ['system-architecture', {
                     frontmatter: makeFrontmatter({
@@ -579,21 +579,80 @@ describe('crossReads on OverlayState (Wave 3c)', () => {
             presetSteps: {},
             output: makeOutput(),
         });
-        // The overlay map is empty; consumers fall back to frontmatter.crossReads.
-        expect(result.crossReads).toEqual({});
+        expect(result.crossReads['system-architecture']).toEqual([
+            { service: 'shared-lib', step: 'api-contracts' },
+        ]);
     });
-    it('returns crossReads as empty object when no step has crossReads', () => {
+    it('returns crossReads keyed per-step with empty arrays when no step has crossReads', () => {
         const metaPrompts = new Map([
             ['some-step', { frontmatter: makeFrontmatter({ name: 'some-step' }) }],
         ]);
         const result = resolveOverlayState({
-            config: makeConfig(),
-            methodologyDir: '/nonexistent',
-            metaPrompts,
-            presetSteps: {},
-            output: makeOutput(),
+            config: makeConfig(), methodologyDir: '/nonexistent', metaPrompts, presetSteps: {}, output: makeOutput(),
         });
-        expect(result.crossReads).toEqual({});
+        expect(result.crossReads['some-step']).toEqual([]);
+    });
+    it('threads crossReadsMap through BOTH project-type (pass 1) and structural (pass 2) passes', () => {
+        const tmpDir = fs.mkdtempSync(path.join(os.tmpdir(), 'cross-reads-both-'));
+        try {
+            // Pass-1 overlay (project-type: backend) — no cross-reads-overrides (forbidden per §4.1)
+            fs.writeFileSync(path.join(tmpDir, 'backend-overlay.yml'), `
+name: backend
+description: pass-1 overlay
+project-type: backend
+step-overrides:
+  system-architecture: { enabled: true }
+`);
+            // Pass-2 overlay (structural multi-service) — owns cross-reads-overrides
+            fs.writeFileSync(path.join(tmpDir, 'multi-service-overlay.yml'), `
+name: multi-service
+description: pass-2 overlay
+step-overrides:
+  system-architecture: { enabled: true }
+cross-reads-overrides:
+  system-architecture:
+    append:
+      - service: billing
+        step: api-contracts
+`);
+            const metaPrompts = new Map([
+                ['system-architecture', {
+                        frontmatter: makeFrontmatter({
+                            name: 'system-architecture',
+                            phase: 'architecture', order: 700,
+                            outputs: ['docs/arch.md'],
+                            // Frontmatter entry MUST survive both passes. Pass 1 is a no-op for
+                            // cross-reads (§4.1), pass 2 appends. A bug that zeroes the map
+                            // before pass 2 would drop this entry.
+                            crossReads: [{ service: 'shared-lib', step: 'api-contracts' }],
+                        }),
+                    }],
+            ]);
+            const result = resolveOverlayState({
+                config: makeConfig({
+                    project: {
+                        projectType: 'backend', // triggers pass 1
+                        services: [{
+                                name: 'api', projectType: 'backend',
+                                backendConfig: { apiStyle: 'rest' },
+                            }],
+                    },
+                    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+                }),
+                methodologyDir: tmpDir,
+                metaPrompts,
+                presetSteps: {},
+                output: makeOutput(),
+            });
+            // Frontmatter entry (preserved through pass 1) + overlay append from pass 2
+            expect(result.crossReads['system-architecture']).toEqual([
+                { service: 'shared-lib', step: 'api-contracts' }, // from frontmatter
+                { service: 'billing', step: 'api-contracts' }, // from structural overlay
+            ]);
+        }
+        finally {
+            fs.rmSync(tmpDir, { recursive: true, force: true });
+        }
     });
 });
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