@zigrivers/scaffold 3.14.0 → 3.16.0

package/dist/project/adopt.js.map

@@ -1 +1 @@
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package/dist/project/detectors/disambiguate.js

@@ -5,7 +5,7 @@
 //   'no-eligible-matches' — disambiguate() called with empty matches
 const PROJECT_TYPE_PREFERENCE = [
     'web-app', 'backend', 'cli', 'library', 'mobile-app',
-    'data-pipeline', 'ml', 'browser-extension', 'game',
+    'data-pipeline', 'ml', 'research', 'browser-extension', 'game',
 ];
 function tierRank(c) {
     return c === 'high' ? 2 : c === 'medium' ? 1 : 0;

package/dist/project/detectors/disambiguate.js.map

@@ -1 +1 @@
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package/dist/project/detectors/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/project/detectors/index.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AACjD,OAAO,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,YAAY,CAAA;AAa1D,eAAO,MAAM,aAAa,EAAE,SAAS,QAAQ,EAO5C,CAAA;AAED,wBAAgB,YAAY,CAC1B,GAAG,EAAE,aAAa,EAClB,SAAS,GAAE,SAAS,QAAQ,EAAkB,GAC7C,cAAc,EAAE,CAOlB"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/project/detectors/index.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AACjD,OAAO,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,YAAY,CAAA;AAc1D,eAAO,MAAM,aAAa,EAAE,SAAS,QAAQ,EAO5C,CAAA;AAED,wBAAgB,YAAY,CAC1B,GAAG,EAAE,aAAa,EAClB,SAAS,GAAE,SAAS,QAAQ,EAAkB,GAC7C,cAAc,EAAE,CAOlB"}

package/dist/project/detectors/index.js

@@ -5,6 +5,7 @@ import { detectDataPipeline } from './data-pipeline.js';
 import { detectWebApp } from './web-app.js';
 import { detectBackend } from './backend.js';
 import { detectMl } from './ml.js';
+import { detectResearch } from './research.js';
 import { detectCli } from './cli.js';
 import { detectLibrary } from './library.js';
 // Order is a PERFORMANCE optimization only. Correctness does NOT depend on order
@@ -13,7 +14,7 @@ export const ALL_DETECTORS = [
     // Tier 1: distinctive root-file detectors (cheap distinctive failures)
     detectGame, detectBrowserExtension, detectMobileApp, detectDataPipeline,
     // Tier 2: dep-heavy detectors
-    detectWebApp, detectBackend, detectMl, detectCli,
+    detectWebApp, detectBackend, detectMl, detectResearch, detectCli,
     // Tier 3: catch-all
     detectLibrary,
 ];

package/dist/project/detectors/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/project/detectors/index.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,UAAU,EAAE,MAAM,WAAW,CAAA;AACtC,OAAO,EAAE,sBAAsB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAA;AACjD,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAA;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AAC5C,OAAO,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAA;AAClC,OAAO,EAAE,SAAS,EAAE,MAAM,UAAU,CAAA;AACpC,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AAE5C,iFAAiF;AACjF,wEAAwE;AACxE,MAAM,CAAC,MAAM,aAAa,GAAwB;IAChD,uEAAuE;IACvE,UAAU,EAAE,sBAAsB,EAAE,eAAe,EAAE,kBAAkB;IACvE,8BAA8B;IAC9B,YAAY,EAAE,aAAa,EAAE,QAAQ,EAAE,SAAS;IAChD,oBAAoB;IACpB,aAAa;CACd,CAAA;AAED,MAAM,UAAU,YAAY,CAC1B,GAAkB,EAClB,YAAiC,aAAa;IAE9C,MAAM,OAAO,GAAqB,EAAE,CAAA;IACpC,KAAK,MAAM,MAAM,IAAI,SAAS,EAAE,CAAC;QAC/B,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,CAAA;QACzB,IAAI,KAAK;YAAE,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAChC,CAAC;IACD,OAAO,OAAO,CAAA;AAChB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/project/detectors/index.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,UAAU,EAAE,MAAM,WAAW,CAAA;AACtC,OAAO,EAAE,sBAAsB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAA;AACjD,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAA;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AAC5C,OAAO,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAA;AAClC,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAA;AAC9C,OAAO,EAAE,SAAS,EAAE,MAAM,UAAU,CAAA;AACpC,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AAE5C,iFAAiF;AACjF,wEAAwE;AACxE,MAAM,CAAC,MAAM,aAAa,GAAwB;IAChD,uEAAuE;IACvE,UAAU,EAAE,sBAAsB,EAAE,eAAe,EAAE,kBAAkB;IACvE,8BAA8B;IAC9B,YAAY,EAAE,aAAa,EAAE,QAAQ,EAAE,cAAc,EAAE,SAAS;IAChE,oBAAoB;IACpB,aAAa;CACd,CAAA;AAED,MAAM,UAAU,YAAY,CAC1B,GAAkB,EAClB,YAAiC,aAAa;IAE9C,MAAM,OAAO,GAAqB,EAAE,CAAA;IACpC,KAAK,MAAM,MAAM,IAAI,SAAS,EAAE,CAAC;QAC/B,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,CAAA;QACzB,IAAI,KAAK;YAAE,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAChC,CAAC;IACD,OAAO,OAAO,CAAA;AAChB,CAAC"}

package/dist/project/detectors/ml.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ml.d.ts","sourceRoot":"","sources":["../../../src/project/detectors/ml.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AACjD,OAAO,KAAK,EAAE,OAAO,EAAqB,MAAM,YAAY,CAAA;AAS5D,wBAAgB,QAAQ,CAAC,GAAG,EAAE,aAAa,GAAG,OAAO,GAAG,IAAI,CAuG3D"}
+{"version":3,"file":"ml.d.ts","sourceRoot":"","sources":["../../../src/project/detectors/ml.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AACjD,OAAO,KAAK,EAAE,OAAO,EAAqB,MAAM,YAAY,CAAA;AAI5D,wBAAgB,QAAQ,CAAC,GAAG,EAAE,aAAa,GAAG,OAAO,GAAG,IAAI,CAuG3D"}

package/dist/project/detectors/ml.js

@@ -1,9 +1,5 @@
 import { evidence } from './types.js';
-const ML_FRAMEWORK_DEPS = [
-    'torch', 'pytorch-lightning', 'tensorflow', 'keras', 'jax',
-    'scikit-learn', 'xgboost', 'lightgbm', 'catboost',
-    'transformers', 'sentence-transformers',
-];
+import { ML_FRAMEWORK_DEPS, EXPERIMENT_TRACKING_DEPS } from './shared-signals.js';
 export function detectMl(ctx) {
     const ev = [];
     const hasMlDep = ctx.hasAnyDep(ML_FRAMEWORK_DEPS, 'py');
@@ -28,7 +24,7 @@ export function detectMl(ctx) {
     const hasTrainPy = ctx.hasFile('train.py') || ctx.hasFile('training.py') || ctx.hasFile('scripts/train.py');
     const hasServePy = ctx.hasFile('serve.py') || ctx.hasFile('predict.py')
         || ctx.hasFile('serving/main.py') || ctx.hasFile('inference/main.py');
-    const hasTrackingDep = ctx.hasAnyDep(['mlflow', 'wandb', 'neptune-client', 'clearml', 'dvc'], 'py');
+    const hasTrackingDep = ctx.hasAnyDep([...EXPERIMENT_TRACKING_DEPS], 'py');
     const hasStructure = hasModelsDir || hasNotebooks || hasTrainPy || hasServePy || hasTrackingDep;
     if (!isHfModelCard && !hasMlDep && !hasNotebooks)
         return null;

package/dist/project/detectors/ml.js.map

@@ -1 +1 @@
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package/dist/project/detectors/research.d.ts

@@ -0,0 +1,4 @@
+import type { SignalContext } from './context.js';
+import type { ResearchMatch } from './types.js';
+export declare function detectResearch(ctx: SignalContext): ResearchMatch | null;
+//# sourceMappingURL=research.d.ts.map

package/dist/project/detectors/research.d.ts.map

@@ -0,0 +1 @@
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package/dist/project/detectors/research.js

@@ -0,0 +1,141 @@
+import { evidence } from './types.js';
+import { ML_FRAMEWORK_DEPS, EXPERIMENT_TRACKING_DEPS } from './shared-signals.js';
+const TRADING_DEPS = ['backtrader', 'zipline', 'vectorbt', 'ccxt', 'ta-lib'];
+const OPTIMIZATION_DEPS = ['optuna', 'hyperopt', 'pymoo', 'nevergrad'];
+const SIMULATION_DEPS = ['openfoam', 'fenics', 'simpy', 'pyomo', 'deap'];
+const LLM_SDK_DEPS = ['openai', 'anthropic', 'langchain'];
+const WEB_FRAMEWORK_DEPS = ['express', 'fastapi', 'django', 'flask', 'hono', 'nestjs'];
+const AUTORESEARCH_MARKERS = /\b(loop|iterate|experiment|run|evaluate)\b/i;
+const TRADING_IMPORTS = /from backtrader|import backtrader|from zipline|import zipline|from vectorbt/;
+const WANDB_SWEEP_KEYS = ['method:', 'metric:', 'parameters:'];
+export function detectResearch(ctx) {
+    const ev = [];
+    // ML dep check — used as a negative gate ONLY for the medium-tier optimization branch.
+    // A repo with autoresearch markers + ML deps (e.g. PyTorch) is still research.
+    const hasMlDep = ctx.hasAnyDep([...ML_FRAMEWORK_DEPS], 'py');
+    // Dep checks
+    const hasTradingDep = ctx.hasAnyDep([...TRADING_DEPS], 'py');
+    const hasOptDep = ctx.hasAnyDep([...OPTIMIZATION_DEPS], 'py');
+    const hasSimDep = ctx.hasAnyDep([...SIMULATION_DEPS], 'py');
+    const hasLlmDep = ctx.hasAnyDep([...LLM_SDK_DEPS], 'py');
+    const hasWebDep = ctx.hasAnyDep([...WEB_FRAMEWORK_DEPS], 'py');
+    const hasTrackingDep = ctx.hasAnyDep([...EXPERIMENT_TRACKING_DEPS], 'py');
+    const hasTrainPy = ctx.hasFile('train.py') || ctx.hasFile('training.py') || ctx.hasFile('scripts/train.py');
+    // Structure checks
+    const hasExperimentsDir = ctx.dirExists('experiments');
+    const hasResultsDir = ctx.dirExists('results');
+    const hasEvalsDir = ctx.dirExists('evals');
+    const hasNotebooks = ctx.rootEntries().some(f => f.endsWith('.ipynb'));
+    const hasExperimentPy = ctx.hasFile('experiment.py');
+    // Academic markers — check root entry extensions + well-known filenames + paper/ dir
+    const hasAcademic = ctx.rootEntries().some(f => f.endsWith('.tex') || f.endsWith('.bib'))
+        || ctx.hasFile('paper.tex') || ctx.hasFile('main.tex')
+        || ctx.hasFile('references.bib') || ctx.hasFile('paper.bib')
+        || ctx.dirExists('paper');
+    let confidence;
+    let driver;
+    let domain;
+    let interactionMode;
+    let backtestMatched = false;
+    // --- HIGH: autoresearch pattern ---
+    if (ctx.hasFile('program.md') && ctx.hasFile('results.tsv')) {
+        const content = ctx.readFileText('program.md', 512) ?? '';
+        if (AUTORESEARCH_MARKERS.test(content)) {
+            confidence = 'high';
+            driver = 'code-driven';
+            interactionMode = 'autonomous';
+            ev.push(evidence('autoresearch-pattern', 'program.md', 'experiment markers found'));
+            ev.push(evidence('autoresearch-results', 'results.tsv'));
+        }
+    }
+    // --- HIGH: trading backtest ---
+    if (!confidence && (ctx.hasFile('backtest.py') || ctx.hasFile('strategy.py')) && hasTradingDep) {
+        const file = ctx.hasFile('backtest.py') ? 'backtest.py' : 'strategy.py';
+        const content = ctx.readFileText(file) ?? '';
+        if (TRADING_IMPORTS.test(content)) {
+            confidence = 'high';
+            driver = 'code-driven';
+            domain = 'quant-finance';
+            backtestMatched = true;
+            ev.push(evidence('trading-backtest', file, 'trading import verified'));
+        }
+    }
+    // --- MEDIUM: optimization + experiments (no ML — negative gate applies here only) ---
+    if (!confidence && hasOptDep && (hasExperimentsDir || hasResultsDir) && !hasMlDep) {
+        confidence = 'medium';
+        driver = 'config-driven';
+        ev.push(evidence('optimization-deps'));
+        ev.push(evidence('experiment-structure', hasExperimentsDir ? 'experiments/' : 'results/'));
+    }
+    // --- MEDIUM: sweep config + experiment structure (non-W&B) ---
+    if (!confidence && (hasExperimentsDir || hasResultsDir)) {
+        const sweepFile = ctx.hasFile('sweep.yaml') ? 'sweep.yaml'
+            : ctx.hasFile('sweep_config.yaml') ? 'sweep_config.yaml'
+                : undefined;
+        if (sweepFile) {
+            const content = ctx.readFileText(sweepFile, 4096) ?? '';
+            const isWandb = WANDB_SWEEP_KEYS.every(k => content.includes(k));
+            if (!isWandb) {
+                confidence = 'medium';
+                driver = 'config-driven';
+                interactionMode = 'autonomous';
+                ev.push(evidence('sweep-config', sweepFile, 'non-W&B sweep config'));
+                ev.push(evidence('experiment-structure', hasExperimentsDir ? 'experiments/' : 'results/'));
+            }
+        }
+    }
+    // --- MEDIUM: trading deps alone (no web, no backtest already matched) ---
+    if (!confidence && hasTradingDep && !hasWebDep && !backtestMatched) {
+        confidence = 'medium';
+        driver = 'code-driven';
+        domain = 'quant-finance';
+        ev.push(evidence('trading-deps'));
+    }
+    // --- MEDIUM: simulation deps + experiment structure ---
+    if (!confidence && hasSimDep && (hasExperimentsDir || hasResultsDir)) {
+        confidence = 'medium';
+        driver = 'code-driven';
+        domain = 'simulation';
+        ev.push(evidence('simulation-deps'));
+        ev.push(evidence('experiment-structure', hasExperimentsDir ? 'experiments/' : 'results/'));
+    }
+    // --- MEDIUM: LLM SDK + eval structure (no train.py) ---
+    const hasEvalStructure = hasEvalsDir || ctx.hasFile('results.jsonl');
+    if (!confidence && hasLlmDep && hasEvalStructure && !hasTrainPy) {
+        confidence = 'medium';
+        driver = 'api-driven';
+        ev.push(evidence('llm-sdk-deps'));
+        ev.push(evidence('eval-structure', hasEvalsDir ? 'evals/' : 'results.jsonl'));
+    }
+    // --- Academic upgrade: medium signals + academic markers → high ---
+    if (confidence === 'medium' && hasAcademic) {
+        confidence = 'high';
+        ev.push(evidence('academic-markers'));
+    }
+    // --- LOW: notebooks + optimization deps ---
+    if (!confidence && hasNotebooks && hasOptDep) {
+        confidence = 'low';
+        driver = 'notebook-driven';
+        ev.push(evidence('notebooks-optimization'));
+    }
+    // --- LOW: experiment.py or experiments/ dir alone ---
+    if (!confidence && (hasExperimentPy || hasExperimentsDir)) {
+        confidence = 'low';
+        driver = 'code-driven';
+        if (hasExperimentPy)
+            ev.push(evidence('experiment-script', 'experiment.py'));
+        if (hasExperimentsDir)
+            ev.push(evidence('experiments-dir', 'experiments/'));
+    }
+    if (!confidence || !driver)
+        return null;
+    const partialConfig = { experimentDriver: driver };
+    if (interactionMode)
+        partialConfig.interactionMode = interactionMode;
+    if (domain)
+        partialConfig.domain = domain;
+    if (hasTrackingDep)
+        partialConfig.hasExperimentTracking = true;
+    return { projectType: 'research', confidence, partialConfig, evidence: ev };
+}
+//# sourceMappingURL=research.js.map

package/dist/project/detectors/research.js.map

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package/dist/project/detectors/research.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=research.test.d.ts.map

package/dist/project/detectors/research.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"research.test.d.ts","sourceRoot":"","sources":["../../../src/project/detectors/research.test.ts"],"names":[],"mappings":""}

package/dist/project/detectors/research.test.js

@@ -0,0 +1,235 @@
+import { describe, it, expect } from 'vitest';
+import { createFakeSignalContext } from './context.js';
+import { detectResearch } from './research.js';
+describe('detectResearch', () => {
+    it('high: autoresearch pattern — program.md + results.tsv with experiment markers', () => {
+        const ctx = createFakeSignalContext({
+            files: {
+                'program.md': '# My Research\n\nLoop through experiments and evaluate results.\n',
+                'results.tsv': 'run\tmetric\tvalue\n1\tacc\t0.95\n',
+            },
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.projectType).toBe('research');
+        expect(m.confidence).toBe('high');
+        expect(m.partialConfig.experimentDriver).toBe('code-driven');
+        expect(m.partialConfig.interactionMode).toBe('autonomous');
+    });
+    it('high: trading backtest — backtest.py + trading dep with import verification', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'quant', dependencies: ['backtrader'] } },
+            files: {
+                'backtest.py': 'from backtrader import Cerebro\nbt = Cerebro()\n',
+            },
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.projectType).toBe('research');
+        expect(m.confidence).toBe('high');
+        expect(m.partialConfig.experimentDriver).toBe('code-driven');
+        expect(m.partialConfig.domain).toBe('quant-finance');
+    });
+    it('medium: optimization deps + experiments dir (no ML deps) → config-driven', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'opt', dependencies: ['optuna'] } },
+            dirs: ['experiments'],
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.projectType).toBe('research');
+        expect(m.confidence).toBe('medium');
+        expect(m.partialConfig.experimentDriver).toBe('config-driven');
+    });
+    it('medium: optimization + ML deps → ML gate blocks medium-tier, falls through to low', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'ml-proj', dependencies: ['torch', 'optuna'] } },
+            dirs: ['experiments'],
+        });
+        const m = detectResearch(ctx);
+        // ML gate blocks the medium-tier optimization branch, but experiments/ dir
+        // alone still fires at low confidence (the ML gate is scoped to medium only).
+        expect(m).not.toBeNull();
+        expect(m.confidence).toBe('low');
+        expect(m.partialConfig.experimentDriver).toBe('code-driven');
+    });
+    it('medium: simulation deps + experiments dir → domain: simulation', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'sim', dependencies: ['simpy'] } },
+            dirs: ['experiments'],
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.projectType).toBe('research');
+        expect(m.confidence).toBe('medium');
+        expect(m.partialConfig.experimentDriver).toBe('code-driven');
+        expect(m.partialConfig.domain).toBe('simulation');
+    });
+    it('medium: trading deps + no web framework → domain: quant-finance', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'trading', dependencies: ['ccxt'] } },
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.projectType).toBe('research');
+        expect(m.confidence).toBe('medium');
+        expect(m.partialConfig.experimentDriver).toBe('code-driven');
+        expect(m.partialConfig.domain).toBe('quant-finance');
+    });
+    it('medium: LLM SDK + evals dir (no train.py) → api-driven', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'llm-eval', dependencies: ['openai'] } },
+            dirs: ['evals'],
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.projectType).toBe('research');
+        expect(m.confidence).toBe('medium');
+        expect(m.partialConfig.experimentDriver).toBe('api-driven');
+    });
+    it('academic upgrade: medium signals + .tex file → upgrades to high', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'paper', dependencies: ['simpy'] } },
+            dirs: ['experiments'],
+            files: { 'paper.tex': '\\documentclass{article}' },
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.confidence).toBe('high');
+    });
+    it('low: experiments dir alone → code-driven', () => {
+        const ctx = createFakeSignalContext({
+            dirs: ['experiments'],
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.projectType).toBe('research');
+        expect(m.confidence).toBe('low');
+        expect(m.partialConfig.experimentDriver).toBe('code-driven');
+    });
+    it('null: empty repo', () => {
+        const ctx = createFakeSignalContext({});
+        expect(detectResearch(ctx)).toBeNull();
+    });
+    it('experiment tracking dep sets hasExperimentTracking', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'tracked', dependencies: ['optuna', 'mlflow'] } },
+            dirs: ['experiments'],
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.partialConfig.hasExperimentTracking).toBe(true);
+    });
+    // --- P0: autoresearch + ML deps should still detect as high ---
+    it('high: autoresearch pattern with ML deps (torch) → still detected as research-high', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'autoresearch', dependencies: ['torch'] } },
+            files: {
+                'program.md': '# Experiment\n\nLoop through parameter sweeps and evaluate.\n',
+                'results.tsv': 'run\tmetric\n1\t0.9\n',
+            },
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.confidence).toBe('high');
+        expect(m.partialConfig.experimentDriver).toBe('code-driven');
+        expect(m.partialConfig.interactionMode).toBe('autonomous');
+    });
+    // --- P1: sweep.yaml signals ---
+    it('medium: sweep.yaml + results dir (non-W&B) → config-driven autonomous', () => {
+        const ctx = createFakeSignalContext({
+            dirs: ['results'],
+            files: {
+                'sweep.yaml': 'lr: [0.001, 0.01]\nbatch_size: [16, 32]\n',
+            },
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.confidence).toBe('medium');
+        expect(m.partialConfig.experimentDriver).toBe('config-driven');
+        expect(m.partialConfig.interactionMode).toBe('autonomous');
+    });
+    it('medium: sweep_config.yaml + experiments dir (non-W&B) → config-driven autonomous', () => {
+        const ctx = createFakeSignalContext({
+            dirs: ['experiments'],
+            files: {
+                'sweep_config.yaml': 'search_space:\n  lr: [0.01, 0.1]\n',
+            },
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.confidence).toBe('medium');
+        expect(m.partialConfig.experimentDriver).toBe('config-driven');
+        expect(m.partialConfig.interactionMode).toBe('autonomous');
+    });
+    it('null: sweep.yaml with all W&B keys (method + metric + parameters) → skip', () => {
+        const ctx = createFakeSignalContext({
+            dirs: ['results'],
+            files: {
+                'sweep.yaml': 'method: bayes\nmetric:\n  name: val_loss\n'
+                    + '  goal: minimize\nparameters:\n  lr:\n    min: 0.001\n',
+            },
+        });
+        const m = detectResearch(ctx);
+        // W&B sweep config is ML territory — no research match
+        expect(m).toBeNull();
+    });
+    // --- P1: results.jsonl for LLM eval ---
+    it('medium: LLM SDK + results.jsonl (no evals dir, no train.py) → api-driven', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'llm-bench', dependencies: ['openai'] } },
+            files: {
+                'results.jsonl': '{"prompt":"test","response":"ok"}\n',
+            },
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.confidence).toBe('medium');
+        expect(m.partialConfig.experimentDriver).toBe('api-driven');
+    });
+    // --- P2: trading deps + web framework → null ---
+    it('null: trading deps + web framework → not research (likely a trading app)', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'trading-app', dependencies: ['ccxt', 'fastapi'] } },
+        });
+        const m = detectResearch(ctx);
+        expect(m).toBeNull();
+    });
+    // --- P2: LLM SDK + evals + train.py → should NOT match LLM eval path ---
+    it('null: LLM SDK + evals dir + train.py → not research (ML training project)', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'fine-tune', dependencies: ['openai'] } },
+            dirs: ['evals'],
+            files: { 'train.py': 'import openai\n' },
+        });
+        const m = detectResearch(ctx);
+        // train.py blocks the LLM eval path; no other signals match
+        expect(m).toBeNull();
+    });
+    // --- P2: notebooks + optimization deps WITH ML deps → still match low ---
+    it('low: notebooks + optimization deps + ML deps → still matches low (ML gate only blocks medium)', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'nb-opt', dependencies: ['optuna', 'torch'] } },
+            rootEntries: ['analysis.ipynb'],
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.confidence).toBe('low');
+        expect(m.partialConfig.experimentDriver).toBe('notebook-driven');
+    });
+    // --- P2: strategy.py trading path ---
+    it('high: strategy.py + trading dep with import verification → quant-finance', () => {
+        const ctx = createFakeSignalContext({
+            pyprojectToml: { project: { name: 'algo', dependencies: ['backtrader'] } },
+            files: {
+                'strategy.py': 'from backtrader import Strategy\nclass MyStrat(Strategy): pass\n',
+            },
+        });
+        const m = detectResearch(ctx);
+        expect(m).not.toBeNull();
+        expect(m.confidence).toBe('high');
+        expect(m.partialConfig.experimentDriver).toBe('code-driven');
+        expect(m.partialConfig.domain).toBe('quant-finance');
+    });
+});
+//# sourceMappingURL=research.test.js.map

package/dist/project/detectors/research.test.js.map

@@ -0,0 +1 @@
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package/dist/project/detectors/shared-signals.d.ts

@@ -0,0 +1,3 @@
+export declare const ML_FRAMEWORK_DEPS: readonly ["torch", "pytorch-lightning", "tensorflow", "keras", "jax", "scikit-learn", "xgboost", "lightgbm", "catboost", "transformers", "sentence-transformers", "mlx"];
+export declare const EXPERIMENT_TRACKING_DEPS: readonly ["mlflow", "wandb", "neptune-client", "clearml", "dvc"];
+//# sourceMappingURL=shared-signals.d.ts.map

package/dist/project/detectors/shared-signals.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"shared-signals.d.ts","sourceRoot":"","sources":["../../../src/project/detectors/shared-signals.ts"],"names":[],"mappings":"AAAA,eAAO,MAAM,iBAAiB,0KAIpB,CAAA;AAEV,eAAO,MAAM,wBAAwB,kEAE3B,CAAA"}

package/dist/project/detectors/shared-signals.js

@@ -0,0 +1,9 @@
+export const ML_FRAMEWORK_DEPS = [
+    'torch', 'pytorch-lightning', 'tensorflow', 'keras', 'jax',
+    'scikit-learn', 'xgboost', 'lightgbm', 'catboost',
+    'transformers', 'sentence-transformers', 'mlx',
+];
+export const EXPERIMENT_TRACKING_DEPS = [
+    'mlflow', 'wandb', 'neptune-client', 'clearml', 'dvc',
+];
+//# sourceMappingURL=shared-signals.js.map

package/dist/project/detectors/shared-signals.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"shared-signals.js","sourceRoot":"","sources":["../../../src/project/detectors/shared-signals.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,iBAAiB,GAAG;IAC/B,OAAO,EAAE,mBAAmB,EAAE,YAAY,EAAE,OAAO,EAAE,KAAK;IAC1D,cAAc,EAAE,SAAS,EAAE,UAAU,EAAE,UAAU;IACjD,cAAc,EAAE,uBAAuB,EAAE,KAAK;CACtC,CAAA;AAEV,MAAM,CAAC,MAAM,wBAAwB,GAAG;IACtC,QAAQ,EAAE,OAAO,EAAE,gBAAgB,EAAE,SAAS,EAAE,KAAK;CAC7C,CAAA"}