@tangle-network/agent-runtime 0.17.2 → 0.18.0

package/README.md

@@ -232,7 +232,6 @@ Runnable in [`examples/`](./examples/). Every example imports from
 - [`model-resolution/`](./examples/model-resolution/) — router catalog + fail-closed admission
 - [`agent-into-reviewer/`](./examples/agent-into-reviewer/) — pipe one runtime's stream into a reviewer agent
 - [`chat-handler/`](./examples/chat-handler/) — `handleChatTurn` (the centerpiece production pattern)
-- [`production-trace-sink/`](./examples/production-trace-sink/) — `createProductionTraceSink` data capture
 
 ## Tests
 

package/dist/agent.d.ts

@@ -1,5 +1,5 @@
 import * as _tangle_network_agent_eval from '@tangle-network/agent-eval';
-import { FindingSubject, TraceAnalystKindSpec, AnalystFinding, TraceStore, RunCompleteHook, FeedbackLabel, FeedbackTrajectoryStore } from '@tangle-network/agent-eval';
+import { FindingSubject, TraceAnalystKindSpec, AnalystFinding } from '@tangle-network/agent-eval';
 import { R as RuntimeStreamEvent } from './types-ByIhNRFk.js';
 import { I as ImprovementAdapter, K as KnowledgeAdapter, a as RunAnalystLoopResult } from './types-D_MXrmJP.js';
 
@@ -580,166 +580,4 @@ declare function measureOutcome<TProposal, TEdit>(result: RunAnalystLoopResult<T
     outcome: OutcomeMeasurement;
 }>;
 
-/**
- * `createProductionTraceSink` — the production-side capture primitive
- * every vertical agent's chat handler wires in once.
- *
- * Closes the data-leak: until now, every production chat session emitted
- * zero replayable trace data. Eval runs captured everything; production
- * captured nothing. RL training corpora, research analyses, and the
- * self-improvement loop all ran on synthetic personas. This primitive
- * makes every real user conversation a piece of data the downstream
- * channels (Prime Intellect, GEPA, research, canaries, analyst loop)
- * can consume.
- *
- * Wiring (per agent, ~10 lines in the production chat handler):
- *
- *   ```ts
- *   const sink = createProductionTraceSink({
- *     projectId: 'tax-agent',
- *     otlp: { endpoint: env.LANGFUSE_OTEL_ENDPOINT, authHeader: env.LANGFUSE_OTEL_AUTH },
- *     runRecordStore: drizzleRunRecordStore(db),
- *     feedbackStore: drizzleFeedbackStore(db),
- *   })
- *
- *   const emitter = new TraceEmitter(sink.traceStore, {
- *     onRunComplete: [sink.onRunComplete],
- *   })
- *   await emitter.startRun({
- *     scenarioId: sessionId,
- *     projectId: 'tax-agent',
- *     layer: 'app-runtime',
- *   })
- *   // ... existing chat flow, with LLM/tool spans emitted ...
- *   await emitter.endRun({ pass, score })
- *   // sink.onRunComplete fires automatically:
- *   //   1. composes RunRecord, persists to runRecordStore
- *   //   2. exports run as OTLP, POSTs to Langfuse
- *   //   3. logs failures (does NOT throw — never crashes the chat handler)
- *   ```
- *
- * Separately, the agent's feedback endpoint calls `sink.recordFeedback`
- * to write user thumbs-up/thumbs-down (or richer labels) into the
- * FeedbackTrajectory store — the corpus DPO/KTO trainers consume.
- *
- * Cloudflare Worker semantics: the sink buffers spans in memory through
- * the request lifetime (via agent-eval's `InMemoryTraceStore`).
- * `onRunComplete` is awaited (typically inside `ctx.waitUntil`) so the
- * worker stays alive long enough to flush. The OTLP POST is fire-and-
- * forget — failures are logged but never surface to the chat user.
- */
-
-interface ProductionTraceSinkOpts {
-    /**
-     * Stable agent identifier — appears in OTLP `service.name`, every
-     * RunRecord row, every FeedbackTrajectory row. MUST match the
-     * agent's repo name to keep cross-repo telemetry joinable.
-     */
-    projectId: string;
-    /**
-     * OTLP forwarding target. Typically Langfuse's HTTP receiver. Omit to
-     * disable OTLP export (RunRecord persistence still works).
-     *
-     * `authHeader` is the full header value (e.g. `Basic <base64>`); the
-     * sink does NOT base64-encode for you.
-     */
-    otlp?: {
-        endpoint: string;
-        authHeader?: string;
-        /** Optional resource attributes merged into every span batch. */
-        resourceAttributes?: Record<string, string | number | boolean>;
-    };
-    /**
-     * Durable RunRecord persistence. Per-vertical agents implement this
-     * over their own DB (Drizzle / D1 / Postgres). Optional — when omitted,
-     * RunRecords stay in-memory and are lost when the worker isolate ends.
-     */
-    runRecordStore?: ProductionRunRecordStore;
-    /**
-     * Durable feedback persistence. Used by `recordFeedback`; agents wire
-     * their thumbs-up/down + free-text feedback endpoints to call into the
-     * sink, which writes a `FeedbackLabel` into a `FeedbackTrajectory`.
-     *
-     * Optional — when omitted, `recordFeedback` is a no-op.
-     */
-    feedbackStore?: FeedbackTrajectoryStore;
-    /**
-     * Pluggable fetch — defaults to globalThis.fetch. Tests inject a
-     * mocked fetch.
-     */
-    fetch?: typeof fetch;
-    /**
-     * Pluggable structured logger — defaults to console.warn for failures.
-     * The sink NEVER throws on flush failure; it logs and returns.
-     */
-    log?: (msg: string, fields?: Record<string, unknown>) => void;
-}
-/**
- * Durable per-agent RunRecord persistence. Each vertical implements over
- * its own DB. The sink calls `append` once per `endRun`.
- */
-interface ProductionRunRecordStore {
-    append(record: ProductionRunRecord): Promise<void>;
-}
-/**
- * Minimal canonical row the sink composes on `endRun`. Per-agent DB
- * adapters extend with their own fields; the sink only writes what
- * the runtime canonically captures.
- */
-interface ProductionRunRecord {
-    runId: string;
-    projectId: string;
-    scenarioId: string;
-    variantId?: string;
-    startedAt: string;
-    endedAt: string;
-    status: 'completed' | 'failed' | 'aborted';
-    pass?: boolean;
-    score?: number;
-    failureClass?: string;
-    notes?: string;
-    /** Echoed back from `emitter.startRun({ tags })`. */
-    tags?: Record<string, string>;
-    /** Span row count — useful for diagnostics. */
-    spanCount: number;
-}
-interface ProductionTraceSink {
-    /**
-     * The TraceStore the agent's `TraceEmitter` writes to. In-memory by
-     * design: spans accumulate through the chat session, flush at
-     * `onRunComplete`. The runtime never reads from this store directly —
-     * the sink reads from it during the flush step.
-     */
-    traceStore: TraceStore;
-    /**
-     * Hook the agent passes into
-     * `new TraceEmitter(store, { onRunComplete: [sink.onRunComplete] })`.
-     * Fires once per chat session at `endRun` time. Composes the
-     * RunRecord, persists, and ships OTLP. Errors are logged, never thrown.
-     */
-    onRunComplete: RunCompleteHook;
-    /**
-     * Append a user feedback label (thumbs-up/down, correction, severity)
-     * to the FeedbackTrajectory for a completed run. Creates a minimal
-     * trajectory anchored to the run if one doesn't exist; appends the
-     * label if it does. No-op when `feedbackStore` is undefined.
-     *
-     * Returns the trajectory id (existing or freshly created) for the
-     * agent's API to link back to the session, or `null` on no-op /
-     * error.
-     */
-    recordFeedback(input: RecordFeedbackInput): Promise<string | null>;
-}
-interface RecordFeedbackInput {
-    /** Run id from the original `emitter.startRun`. */
-    runId: string;
-    /** The user-supplied feedback label. */
-    label: FeedbackLabel;
-    /** Optional scenario id (mirrors the run's). */
-    scenarioId?: string;
-    /** Optional pre-existing trajectory id if the agent tracks them separately. */
-    trajectoryId?: string;
-}
-declare function createProductionTraceSink(opts: ProductionTraceSinkOpts): ProductionTraceSink;
-
-export { type AgentManifest, AgentManifestError, type AgentRubric, type AgentRunContext, type AgentRunInvocation, type AgentRuntime, type AgentSurfaces, type AnalystConfig, type AutoApplyPolicy, type CreateSurfaceImprovementAdapterOpts, type CreateSurfaceKnowledgeAdapterOpts, type DraftPatchInput, type DraftPatchOutput, type JudgeConfig, type KnowledgeAdapterDeps, type OutcomeMeasurement, type OutcomeMeasurementOpts, type ProductionRunRecord, type ProductionRunRecordStore, type ProductionTraceSink, type ProductionTraceSinkOpts, type RecordFeedbackInput, type ResolvedSurface, type RubricDimension, type SurfaceImprovementEdit, type SurfaceValidationIssue, collectAgentRun, createProductionTraceSink, createSurfaceImprovementAdapter, createSurfaceKnowledgeAdapter, defineAgent, measureOutcome, renderSurfaceIssues, resolveSubjectPath, unimplementedAgentRun, validateSurfaces };
+export { type AgentManifest, AgentManifestError, type AgentRubric, type AgentRunContext, type AgentRunInvocation, type AgentRuntime, type AgentSurfaces, type AnalystConfig, type AutoApplyPolicy, type CreateSurfaceImprovementAdapterOpts, type CreateSurfaceKnowledgeAdapterOpts, type DraftPatchInput, type DraftPatchOutput, type JudgeConfig, type KnowledgeAdapterDeps, type OutcomeMeasurement, type OutcomeMeasurementOpts, type ResolvedSurface, type RubricDimension, type SurfaceImprovementEdit, type SurfaceValidationIssue, collectAgentRun, createSurfaceImprovementAdapter, createSurfaceKnowledgeAdapter, defineAgent, measureOutcome, renderSurfaceIssues, resolveSubjectPath, unimplementedAgentRun, validateSurfaces };

package/dist/agent.js

@@ -493,117 +493,9 @@ function meanComposite(rows) {
   if (rows.length === 0) return 0;
   return rows.reduce((acc, r) => acc + r.composite, 0) / rows.length;
 }
-
-// src/agent/production-trace-sink.ts
-import {
-  exportRunAsOtlp,
-  InMemoryTraceStore
-} from "@tangle-network/agent-eval";
-function createProductionTraceSink(opts) {
-  const log = opts.log ?? defaultLog;
-  const fetchImpl = opts.fetch ?? globalThis.fetch;
-  const traceStore = new InMemoryTraceStore();
-  const onRunComplete = async (ctx) => {
-    if (opts.runRecordStore) {
-      try {
-        const record = await composeRunRecord(traceStore, ctx, opts.projectId);
-        await opts.runRecordStore.append(record);
-      } catch (err) {
-        log("runRecordStore.append failed", {
-          runId: ctx.runId,
-          error: err instanceof Error ? err.message : String(err)
-        });
-      }
-    }
-    if (opts.otlp) {
-      try {
-        const resourceAttrs = {
-          "service.name": opts.projectId,
-          ...opts.otlp.resourceAttributes ?? {}
-        };
-        const otlpPayload = await exportRunAsOtlp(traceStore, ctx.runId, resourceAttrs);
-        const headers = { "content-type": "application/json" };
-        if (opts.otlp.authHeader) headers.authorization = opts.otlp.authHeader;
-        const res = await fetchImpl(opts.otlp.endpoint, {
-          method: "POST",
-          headers,
-          body: JSON.stringify(otlpPayload)
-        });
-        if (!res.ok) {
-          log("OTLP POST non-2xx", {
-            runId: ctx.runId,
-            status: res.status,
-            endpoint: opts.otlp.endpoint
-          });
-        }
-      } catch (err) {
-        log("OTLP POST threw", {
-          runId: ctx.runId,
-          error: err instanceof Error ? err.message : String(err),
-          endpoint: opts.otlp.endpoint
-        });
-      }
-    }
-  };
-  const recordFeedback = async (input) => {
-    if (!opts.feedbackStore) return null;
-    const trajectoryId = input.trajectoryId ?? `traj-${input.runId}`;
-    try {
-      const existing = await opts.feedbackStore.get(trajectoryId);
-      if (existing) {
-        await opts.feedbackStore.appendLabel(trajectoryId, input.label);
-        return trajectoryId;
-      }
-      await opts.feedbackStore.save({
-        id: trajectoryId,
-        projectId: opts.projectId,
-        scenarioId: input.scenarioId ?? input.runId,
-        task: { intent: "chat", context: { runId: input.runId } },
-        attempts: [],
-        labels: [input.label],
-        createdAt: (/* @__PURE__ */ new Date()).toISOString()
-      });
-      return trajectoryId;
-    } catch (err) {
-      log("feedbackStore write failed", {
-        runId: input.runId,
-        error: err instanceof Error ? err.message : String(err)
-      });
-      return null;
-    }
-  };
-  return { traceStore, onRunComplete, recordFeedback };
-}
-async function composeRunRecord(store, ctx, projectId) {
-  const run = await store.getRun(ctx.runId);
-  const spans = await store.spans({ runId: ctx.runId });
-  const now = Date.now();
-  const startedAtMs = run?.startedAt ?? now;
-  const endedAtMs = run?.endedAt ?? now;
-  return {
-    runId: ctx.runId,
-    projectId,
-    scenarioId: run?.scenarioId ?? ctx.runId,
-    variantId: run?.variantId,
-    startedAt: new Date(startedAtMs).toISOString(),
-    endedAt: new Date(endedAtMs).toISOString(),
-    status: ctx.status,
-    pass: ctx.outcome?.pass,
-    score: ctx.outcome?.score,
-    failureClass: ctx.outcome?.failureClass,
-    notes: ctx.outcome?.notes,
-    tags: run?.tags,
-    spanCount: spans.length
-  };
-}
-function defaultLog(msg, fields) {
-  if (fields) console.warn(`[production-trace-sink] ${msg}`, fields);
-  else console.warn(`[production-trace-sink] ${msg}`);
-}
 export {
   AgentManifestError,
   collectAgentRun,
-  createProductionTraceSink,
   createSurfaceImprovementAdapter,
   createSurfaceKnowledgeAdapter,
   defineAgent,

package/dist/agent.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/agent/surfaces.ts","../src/agent/define-agent.ts","../src/agent/improvement-adapter.ts","../src/agent/knowledge-adapter.ts","../src/agent/outcome.ts","../src/agent/production-trace-sink.ts"],"sourcesContent":["/**\n * `AgentSurfaces` — declarative map of the mutable file/directory paths\n * the self-improvement loop can edit on behalf of an agent.\n *\n * The substrate uses this map to resolve every parsed `FindingSubject`\n * (from agent-eval) to a real on-disk path. No per-vertical glue;\n * no fabricated paths; no silent `existsSync(...)` skips that hide\n * misconfiguration from the operator.\n *\n * Surfaces are validated at `defineAgent` time — missing paths fail\n * loud with a list of every offender. A surface that's not needed\n * (e.g. an agent with no RAG corpora) is simply omitted; the loop\n * refuses to route those subjects rather than fabricating a target.\n */\n\nimport { existsSync } from 'node:fs'\nimport { isAbsolute, join } from 'node:path'\nimport type { FindingSubject } from '@tangle-network/agent-eval'\n\n/**\n * Surface declarations. Every path is repo-relative (or absolute) at\n * `defineAgent` time. At resolution time, paths are joined against the\n * agent's `repoRoot`.\n *\n * `systemPrompt`, `tools`, `personas` are DIRECTORIES; the loop appends\n * `<section>.md`, `<tool>/README.md`, `<persona-id>.yaml` etc.\n * `rubric`, `outputSchema` are SINGLE FILES; the loop edits them in\n * place.\n *\n * `knowledge` is the agent-knowledge root (typically `.agent-knowledge`);\n * `applyKnowledgeWriteBlocks` writes pages relative to it.\n *\n * Optional surfaces (`scaffolding`, `memory`, `rag`, `outputSchema`)\n * can be omitted — the loop will reject findings targeting them with a\n * clear log message instead of fabricating a path.\n */\nexport interface AgentSurfaces {\n  /** Directory containing one markdown file per system-prompt section. */\n  systemPrompt: string\n  /** Directory containing one subdir per tool (`<tool>/README.md`). */\n  tools: string\n  /** Single file (TypeScript module) defining the rubric weights + dimensions. */\n  rubric: string\n  /** Knowledge-base root; typically `.agent-knowledge`. */\n  knowledge: string\n  /** Directory containing one YAML/JSON file per persona. */\n  personas: string\n  /** Optional: directory containing scaffolding rules (precondition checks, retry policies). */\n  scaffolding?: string\n  /** Optional: memory store path (JSONL / SQLite / DB). */\n  memory?: string\n  /** Optional: directory containing RAG corpora (`<corpus>/<doc-id>.md`). */\n  rag?: string\n  /** Optional: single file defining the output schema (Zod / JSON Schema). */\n  outputSchema?: string\n}\n\nexport interface ResolvedSurface {\n  /** Absolute filesystem path the operator can `cat` / `vim`. */\n  absolutePath: string\n  /** Repo-relative path for PR descriptions, diffs, audit logs. */\n  repoRelativePath: string\n  /** Whether the path currently exists on disk. */\n  exists: boolean\n  /** The substrate's intent: edit an existing file or create a new one. */\n  intent: 'edit-existing' | 'create-new'\n}\n\n/**\n * Resolve a parsed `FindingSubject` to the file path the substrate\n * should edit (or create) on disk.\n *\n * Returns `null` when:\n *   - the subject targets a surface the agent didn't declare\n *     (e.g. `rag:*` when `surfaces.rag` is undefined), OR\n *   - the subject is a `cluster` (failure-mode emits these as evidence,\n *     not actionable mutations — they don't route to a file).\n *\n * Returns a `ResolvedSurface` with `intent: 'create-new'` when the\n * subject names a path that doesn't yet exist (e.g. a new wiki page).\n * The caller chooses whether to honour the create — for tightly-managed\n * surfaces like `systemPrompt` it's usually a contract violation\n * (the analyst named a section that doesn't exist); for `knowledge`\n * it's the whole point.\n */\nexport function resolveSubjectPath(\n  subject: FindingSubject,\n  surfaces: AgentSurfaces,\n  repoRoot: string,\n): ResolvedSurface | null {\n  const candidates = candidatePathsForSubject(subject, surfaces)\n  if (candidates.length === 0) return null\n\n  // Probe candidates in order, preferring the first one that exists on disk.\n  // Lets the substrate accept both the flat `<section>.md` convention and\n  // the skill-dir `<section>/SKILL.md` convention without forcing one layout.\n  // When none exists, fall back to the first candidate (canonical create-new).\n  for (const rel of candidates) {\n    const abs = isAbsolute(rel) ? rel : join(repoRoot, rel)\n    if (existsSync(abs)) {\n      return { absolutePath: abs, repoRelativePath: rel, exists: true, intent: 'edit-existing' }\n    }\n  }\n  const fallback = candidates[0]!\n  const fallbackAbs = isAbsolute(fallback) ? fallback : join(repoRoot, fallback)\n  return {\n    absolutePath: fallbackAbs,\n    repoRelativePath: fallback,\n    exists: false,\n    intent: 'create-new',\n  }\n}\n\nfunction candidatePathsForSubject(\n  subject: FindingSubject,\n  surfaces: AgentSurfaces,\n): ReadonlyArray<string> {\n  switch (subject.kind) {\n    case 'knowledge.wiki':\n    case 'knowledge.stale':\n      return [join(surfaces.knowledge, `${subject.slug}.md`)]\n    case 'knowledge.claim':\n      // Claims land in a per-topic claims directory under the knowledge root.\n      return [join(surfaces.knowledge, 'claims', `${slugify(subject.topic)}.md`)]\n    case 'knowledge.raw':\n      return [join(surfaces.knowledge, 'raw', `${subject.sourceId}.md`)]\n    case 'system-prompt': {\n      const slug = slugify(subject.section)\n      // Prefer flat layout for create-new (canonical); probe skill-dir layout\n      // in case the existing repo (tax/legal/gtm/creative) uses\n      // `<section>/SKILL.md` already.\n      return [\n        join(surfaces.systemPrompt, `${slug}.md`),\n        join(surfaces.systemPrompt, slug, 'SKILL.md'),\n        join(surfaces.systemPrompt, slug, 'index.md'),\n      ]\n    }\n    case 'tool-doc':\n      if (subject.aspect) {\n        return [join(surfaces.tools, subject.tool, `${slugify(subject.aspect)}.md`)]\n      }\n      // tool-doc default: `<tool>/README.md`; also probe `<tool>.md` for flat\n      // tool-list repos.\n      return [\n        join(surfaces.tools, subject.tool, 'README.md'),\n        join(surfaces.tools, `${subject.tool}.md`),\n      ]\n    case 'new-tool':\n      return [join(surfaces.tools, subject.name, 'README.md')]\n    case 'rag':\n      if (!surfaces.rag) return []\n      return [join(surfaces.rag, subject.corpus, `${subject.docId}.md`)]\n    case 'memory':\n      if (!surfaces.memory) return []\n      return [join(surfaces.memory, `${slugify(subject.key)}.json`)]\n    case 'scaffolding':\n      if (!surfaces.scaffolding) return []\n      return [join(surfaces.scaffolding, `${slugify(subject.concern)}.md`)]\n    case 'output-schema':\n      if (!surfaces.outputSchema) return []\n      return [surfaces.outputSchema]\n    case 'websearch.outdated':\n    case 'prior-run-summary':\n      // Stale signals don't map to a single file — handled by the knowledge\n      // adapter as `agent-knowledge:stale:*` after operator review.\n      return []\n    case 'cluster':\n      // failure-mode cluster labels are evidence, not mutations.\n      return []\n  }\n}\n\nfunction slugify(s: string): string {\n  return (\n    s\n      .toLowerCase()\n      .replace(/[^a-z0-9-]+/g, '-')\n      .replace(/^-+|-+$/g, '')\n      .slice(0, 200) || 'untitled'\n  )\n}\n\n/**\n * Validate that every declared surface exists on disk under `repoRoot`.\n *\n * Returns an array of `SurfaceValidationIssue` — empty when all required\n * surfaces resolve. `defineAgent` throws with the issues rendered, so\n * a misconfigured manifest fails at startup (not at the first finding\n * the loop produces 20 minutes later).\n */\nexport interface SurfaceValidationIssue {\n  surface: keyof AgentSurfaces\n  path: string\n  reason: 'missing' | 'not-directory' | 'not-file'\n}\n\nexport function validateSurfaces(\n  surfaces: AgentSurfaces,\n  repoRoot: string,\n): ReadonlyArray<SurfaceValidationIssue> {\n  const issues: SurfaceValidationIssue[] = []\n  const dirSurfaces: ReadonlyArray<keyof AgentSurfaces> = [\n    'systemPrompt',\n    'tools',\n    'personas',\n    'knowledge',\n  ]\n  const fileSurfaces: ReadonlyArray<keyof AgentSurfaces> = ['rubric']\n  const optionalDirSurfaces: ReadonlyArray<keyof AgentSurfaces> = ['scaffolding', 'memory', 'rag']\n  const optionalFileSurfaces: ReadonlyArray<keyof AgentSurfaces> = ['outputSchema']\n\n  for (const key of dirSurfaces) {\n    const p = surfaces[key] as string | undefined\n    if (!p) {\n      issues.push({ surface: key, path: '', reason: 'missing' })\n      continue\n    }\n    const abs = isAbsolute(p) ? p : join(repoRoot, p)\n    if (!existsSync(abs)) {\n      issues.push({ surface: key, path: p, reason: 'missing' })\n    }\n  }\n  for (const key of fileSurfaces) {\n    const p = surfaces[key] as string | undefined\n    if (!p) {\n      issues.push({ surface: key, path: '', reason: 'missing' })\n      continue\n    }\n    const abs = isAbsolute(p) ? p : join(repoRoot, p)\n    if (!existsSync(abs)) {\n      issues.push({ surface: key, path: p, reason: 'missing' })\n    }\n  }\n  for (const key of [...optionalDirSurfaces, ...optionalFileSurfaces]) {\n    const p = surfaces[key] as string | undefined\n    if (p === undefined) continue\n    const abs = isAbsolute(p) ? p : join(repoRoot, p)\n    if (!existsSync(abs)) {\n      issues.push({ surface: key, path: p, reason: 'missing' })\n    }\n  }\n  return issues\n}\n\nexport function renderSurfaceIssues(\n  issues: ReadonlyArray<SurfaceValidationIssue>,\n  repoRoot: string,\n): string {\n  if (issues.length === 0) return ''\n  const lines = issues.map(\n    (i) => `  - ${i.surface}: ${i.path ? `\"${i.path}\"` : '<not set>'} (${i.reason})`,\n  )\n  return [\n    `Agent surface validation failed against repoRoot=${repoRoot}:`,\n    ...lines,\n    '',\n    'Fix the manifest: every required surface must point at an existing',\n    'directory (systemPrompt / tools / personas / knowledge) or file',\n    '(rubric). Optional surfaces (scaffolding / memory / rag / outputSchema)',\n    'may be omitted; the loop will reject findings targeting omitted',\n    'surfaces rather than fabricating a path.',\n  ].join('\\n')\n}\n","/**\n * `defineAgent` — typed, validated manifest API for declarative agent\n * configuration. The substrate consumes this manifest to wire the\n * canonical eval pattern + analyst self-improvement loop without any\n * per-vertical glue.\n *\n * Design goal: scale to 1000s of vertical agents. Every agent declares\n * its surfaces, rubric, runtime, and analyst configuration in ~50 lines.\n * No per-vertical `ImprovementAdapter`. No per-vertical CLI. No\n * fabricated paths.\n *\n * Validation: `defineAgent` runs `validateSurfaces` synchronously and\n * throws a structured error if any required surface is missing on\n * disk. The cost is one filesystem stat per surface (cheap); the\n * benefit is a manifest that can't ship broken.\n */\n\nimport type { TraceAnalystKindSpec } from '@tangle-network/agent-eval'\nimport type { RuntimeStreamEvent } from '../types'\nimport { type AgentSurfaces, renderSurfaceIssues, validateSurfaces } from './surfaces'\n\n// ── manifest ─────────────────────────────────────────────────────────\n\n/**\n * The full agent manifest. Each agent ships ONE of these.\n *\n * Generics:\n *   `TPersona` — the agent's persona shape (loaded from\n *     `surfaces.personas`). Defaults to `unknown` so the substrate's\n *     persona discovery (`loadPersonas`) can accept anything; per-agent\n *     code re-narrows when it matters.\n *   `TRunOutput` — the shape `runtime.act` returns. Used by the rubric\n *     scorers and emitted into the trace.\n */\nexport interface AgentManifest<TPersona = unknown, TRunOutput = unknown> {\n  /**\n   * Stable identifier — used as `projectId` in traces, as the analyst\n   * loop's `runId` prefix, and as the namespace under which findings\n   * are persisted. MUST match the agent's repo name to keep\n   * cross-repo telemetry joinable.\n   */\n  id: string\n\n  /**\n   * Filesystem root the substrate resolves surface paths against.\n   * Typically `process.cwd()` or a fixed absolute path. Use an\n   * absolute path when the agent's tests may run from subdirectories\n   * (vitest sometimes shifts cwd).\n   */\n  repoRoot: string\n\n  /**\n   * Map of mutable surfaces the self-improvement loop can edit. See\n   * `AgentSurfaces` — required: `systemPrompt`, `tools`, `rubric`,\n   * `knowledge`, `personas`. Optional: `scaffolding`, `memory`, `rag`,\n   * `outputSchema`.\n   *\n   * Every required path is validated at `defineAgent` time. Missing\n   * paths throw with the full list of offenders.\n   */\n  surfaces: AgentSurfaces\n\n  /**\n   * Rubric the substrate uses to score each run. Dimensions × weights\n   * × judges. The substrate computes the weighted composite and\n   * stamps it into the RunRecord.\n   */\n  rubric: AgentRubric<TRunOutput>\n\n  /**\n   * Runtime adapter — how the substrate INVOKES the agent against a\n   * persona. The `act` function takes a persona + a context (with the\n   * tracer the substrate threads through for span emission) and\n   * returns the run output the rubric will score.\n   *\n   * The agent's existing production runtime goes in here; the\n   * substrate is intentionally thin around it.\n   */\n  runtime: AgentRuntime<TPersona, TRunOutput>\n\n  /**\n   * Persona discovery — the substrate loads personas via this function\n   * at eval start. Can read from `surfaces.personas`, an API, or be\n   * hardcoded. The substrate calls it once per `runAgentEval` call;\n   * persona ordering is preserved.\n   */\n  personas: () => Promise<ReadonlyArray<TPersona>>\n\n  /**\n   * Analyst kinds the substrate runs against each persona's trace.\n   * Defaults to `DEFAULT_TRACE_ANALYST_KINDS` from agent-eval. Per-agent\n   * authors can prune (e.g. skip `knowledge-poisoning` when there's no\n   * knowledge base) or extend (custom domain kinds).\n   *\n   * Empty array disables the loop — useful for `pnpm eval --no-analyst`.\n   */\n  analystKinds: ReadonlyArray<TraceAnalystKindSpec>\n\n  /**\n   * Analyst LLM configuration. The substrate uses these for all four\n   * kinds (override per-kind via `analystKinds` if needed).\n   */\n  analyst: AnalystConfig\n\n  /**\n   * Auto-apply policy. Knowledge / improvement edits land only when\n   * `enabled === true` AND the source finding's confidence meets the\n   * threshold. `mode` controls how applies happen: `'write'` mutates\n   * files in-place; `'open-pr'` writes to a branch and opens a PR.\n   *\n   * Default: knowledge auto-applies at confidence ≥0.85 in `'write'`\n   * mode (wiki edits are git-reversible); improvement stays at\n   * `enabled: false` until the agent author has measured precision.\n   */\n  autoApply?: AutoApplyPolicy\n}\n\nexport interface AgentRubric<TRunOutput> {\n  /** Dimensions composing the weighted score. Weights sum to 1.0 by convention. */\n  dimensions: ReadonlyArray<RubricDimension<TRunOutput>>\n  /**\n   * Optional judges layered on top of deterministic dimensions. Each\n   * judge returns a score per dimension; the substrate averages judges\n   * (mean by default) for the LLM contribution.\n   */\n  judges?: ReadonlyArray<JudgeConfig<TRunOutput>>\n}\n\nexport interface RubricDimension<TRunOutput> {\n  /** Unique identifier — appears in finding subjects (`rubric:<id>`). */\n  id: string\n  /** 0..1 — weight in the composite. */\n  weight: number\n  /**\n   * Deterministic scorer: given the persona + run output, returns a\n   * 0..1 score. The substrate sums weight × score across dimensions\n   * for the deterministic composite; judges supplement subjective dims.\n   */\n  score: (input: { persona: unknown; output: TRunOutput }) => number\n  /** Optional human-readable label for reports. */\n  label?: string\n}\n\nexport interface JudgeConfig<TRunOutput> {\n  /** Judge identifier — appears in trace spans + manifest. */\n  id: string\n  /** Model snapshot to invoke. Pin the snapshot (`claude-sonnet-4-6@2025-04-15`); the validator rejects bare aliases. */\n  model: string\n  /** Dimensions this judge scores. */\n  dimensions: ReadonlyArray<string>\n  /**\n   * Optional rubric anchors — text examples the judge sees as a\n   * few-shot prompt to calibrate. STRONGLY recommended for subjective\n   * dimensions; required by the calibration gate (Pearson ≥0.7).\n   */\n  anchors?: ReadonlyArray<{ input: string; output: TRunOutput; expected: Record<string, number> }>\n}\n\nexport interface AgentRuntime<TPersona, TRunOutput> {\n  /**\n   * Invoke the agent against one persona. Returns BOTH:\n   *   - `events`: an `AsyncIterable<RuntimeStreamEvent>` the chat-centric\n   *     product consumes verbatim (SSE / WebSocket / inline render).\n   *     **Streaming is mandatory — never collapse this to a single Promise.**\n   *     The agent's existing `runChatTurn` (or equivalent async generator)\n   *     plugs in here directly.\n   *   - `output`: a `Promise<TRunOutput>` resolved AFTER the event stream\n   *     drains. The eval substrate awaits this for rubric scoring; chat\n   *     products usually ignore it (they already rendered incrementally).\n   *\n   * Implementation contract:\n   *   1. `act` MUST return immediately (synchronous construction of the\n   *      `events` iterator + the `output` promise).\n   *   2. Iterating `events` drives the underlying LLM/tool calls — the\n   *      caller chooses when to consume.\n   *   3. `output` resolves only after the iterator yields its terminal\n   *      event (typically `task_end`); see `collectAgentRun` helper.\n   *\n   * `ctx.emitter` is the substrate-threaded `TraceEmitter` — runtimes\n   * SHOULD record LLM/tool spans through it for capture integrity.\n   * `ctx.deadlineMs` is wall-clock; the runtime SHOULD honour for graceful\n   * cancel. `ctx.signal` is the standard abort signal.\n   */\n  act: (persona: TPersona, ctx: AgentRunContext) => AgentRunInvocation<TRunOutput>\n}\n\nexport interface AgentRunInvocation<TRunOutput> {\n  /** Live stream of typed runtime events. Consumed by chat UX directly. */\n  events: AsyncIterable<RuntimeStreamEvent>\n  /** Final structured output the rubric scores. Resolves after `events` drains. */\n  output: Promise<TRunOutput>\n}\n\n/**\n * Stub for agents whose `runtime.act` is not yet wired to the substrate's\n * eval path. Preserves the streaming contract (empty event stream + a\n * rejected `output` promise that tells the caller exactly what to fix).\n *\n * Per-vertical manifests usually start with this stub and replace it with\n * the agent's real streaming runtime (`runChatTurn` or equivalent) once\n * the eval path consumes the manifest end-to-end.\n */\nexport function unimplementedAgentRun<TRunOutput = unknown>(\n  reason = 'AgentRuntime.act is not yet wired for this manifest',\n): AgentRunInvocation<TRunOutput> {\n  return {\n    events: (async function* empty(): AsyncIterable<RuntimeStreamEvent> {})(),\n    output: Promise.reject(new Error(reason)),\n  }\n}\n\n/**\n * Drain `act`'s `events` into an array AND await its `output`. Useful for\n * eval / outcome-measurement code paths that don't care about live\n * rendering. The events array is preserved so the substrate can inspect\n * tool calls / readiness / questions retrospectively.\n *\n * IMPORTANT: chat-centric UX MUST NOT call this — it defeats streaming\n * (no incremental render). Use `for await (const ev of invocation.events)`\n * directly in the chat surface.\n */\nexport async function collectAgentRun<TRunOutput>(\n  invocation: AgentRunInvocation<TRunOutput>,\n): Promise<{ events: ReadonlyArray<RuntimeStreamEvent>; output: TRunOutput }> {\n  const events: RuntimeStreamEvent[] = []\n  for await (const ev of invocation.events) events.push(ev)\n  const output = await invocation.output\n  return { events, output }\n}\n\nexport interface AgentRunContext {\n  /** Substrate-managed trace emitter. */\n  emitter: import('@tangle-network/agent-eval').TraceEmitter\n  /** Stable run id for this persona × variant cell. */\n  runId: string\n  /** Variant the runtime is exercising (e.g. `'baseline'`, `'source-grounded'`). */\n  variantId?: string\n  /** Wall-clock deadline (epoch ms). The runtime SHOULD honour for graceful cancel. */\n  deadlineMs?: number\n  /** Optional abort signal. */\n  signal?: AbortSignal\n}\n\nexport interface AnalystConfig {\n  /** Model the analyst kinds use. Override per-kind via `analystKinds[i].cost.models`. */\n  model: string\n  /** Optional total budget across all kinds for one run. Substrate enforces via `BudgetGuard`. */\n  budgetUsd?: number\n  /** Backend hint for the AxAIService factory — same shape every kind uses. */\n  backend?: {\n    name?: 'openai' | 'router'\n    apiKey?: string\n    baseUrl?: string\n  }\n}\n\nexport interface AutoApplyPolicy {\n  knowledge?: {\n    enabled: boolean\n    confidenceThreshold?: number\n    mode?: 'write' | 'open-pr'\n  }\n  improvement?: {\n    enabled: boolean\n    confidenceThreshold?: number\n    mode?: 'write' | 'open-pr'\n  }\n}\n\n// ── factory + validation ─────────────────────────────────────────────\n\nexport class AgentManifestError extends Error {\n  constructor(\n    message: string,\n    public readonly agentId: string,\n    public readonly issues: ReadonlyArray<unknown> = [],\n  ) {\n    super(message)\n    this.name = 'AgentManifestError'\n  }\n}\n\n/**\n * Construct a validated agent manifest. Throws `AgentManifestError`\n * if any required surface is missing on disk.\n *\n * Generics: pass your persona / output types if you want narrowed\n * `runtime.act` signatures:\n *   `defineAgent<TaxPersona, TaxRunOutput>({ ... })`\n *\n * Most callers don't need the generics — the substrate operates on\n * `unknown` payloads internally and the manifest's `score` /\n * `runtime.act` see the typed shapes via TypeScript inference at\n * the call site.\n */\nexport function defineAgent<TPersona = unknown, TRunOutput = unknown>(\n  manifest: AgentManifest<TPersona, TRunOutput>,\n): AgentManifest<TPersona, TRunOutput> {\n  if (!manifest.id || manifest.id.trim().length === 0) {\n    throw new AgentManifestError('defineAgent: `id` is required', manifest.id ?? '')\n  }\n  if (!manifest.repoRoot || manifest.repoRoot.trim().length === 0) {\n    throw new AgentManifestError('defineAgent: `repoRoot` is required', manifest.id)\n  }\n  const issues = validateSurfaces(manifest.surfaces, manifest.repoRoot)\n  if (issues.length > 0) {\n    throw new AgentManifestError(\n      renderSurfaceIssues(issues, manifest.repoRoot),\n      manifest.id,\n      issues,\n    )\n  }\n  // Lightweight rubric sanity: weights sum to ~1.0 (no hard requirement —\n  // the substrate normalizes — but flag wildly miscalibrated weights).\n  const total = manifest.rubric.dimensions.reduce((acc, d) => acc + d.weight, 0)\n  if (manifest.rubric.dimensions.length > 0 && (total < 0.5 || total > 1.5)) {\n    throw new AgentManifestError(\n      `defineAgent(${manifest.id}): rubric dimension weights sum to ${total.toFixed(3)} — should be ~1.0`,\n      manifest.id,\n    )\n  }\n  return manifest\n}\n","/**\n * Substrate-default `ImprovementAdapter` — surfaces-driven, LLM-drafted\n * patches, optional auto-apply or PR-open.\n *\n * This is the one ImprovementAdapter every vertical agent uses. The\n * substrate parses each finding's `subject` via\n * `parseFindingSubject` (agent-eval), resolves it to a real file path\n * via the agent's `AgentSurfaces`, reads the current content, and asks\n * an LLM to draft a unified-diff patch given the finding + current\n * content + per-kind editing-discipline rules.\n *\n * Auto-apply gates on the source-finding's confidence and the\n * autoApply.improvement policy. Two modes:\n *   `write` — apply the patch in-place via `git apply -p0`. Operator\n *     reviews via `git diff`.\n *   `open-pr` — write to a branch, commit, push, open a PR via `gh`.\n *     Operator reviews via the PR UI.\n *\n * Fail-loud rules:\n *   - Findings whose subject doesn't parse → counted in `errors`.\n *   - Findings whose subject targets an undeclared surface → counted in\n *     `errors` with the offending kind in the message.\n *   - Findings whose target path doesn't exist AND the kind isn't a\n *     create-new variant (`new-tool`, `knowledge.wiki`) → counted in\n *     `errors` with the resolved path in the message.\n *   - LLM drafts that fail JSON-schema validation → counted in\n *     `errors` with the schema issue.\n *\n * No silent skips. Every dropped finding has a recorded reason the\n * loop's report surfaces.\n */\n\nimport { spawnSync } from 'node:child_process'\nimport { readFileSync } from 'node:fs'\nimport {\n  type AnalystFinding,\n  type FindingSubject,\n  parseFindingSubject,\n} from '@tangle-network/agent-eval'\nimport type { ImprovementAdapter } from '../analyst-loop/types'\nimport type { AgentSurfaces, ResolvedSurface } from './surfaces'\nimport { resolveSubjectPath } from './surfaces'\n\n// ── proposal shape ───────────────────────────────────────────────────\n\nexport interface SurfaceImprovementEdit {\n  /** Stable id derived from the source finding so re-proposals are idempotent. */\n  id: string\n  /** The finding that produced this edit — for revert + audit trail. */\n  sourceFindingId: string\n  /** Parsed subject; included so the apply step doesn't re-parse. */\n  subject: FindingSubject\n  /** Resolved on-disk target. */\n  target: ResolvedSurface\n  /** SHA-256 of the current file content the patch was drafted against. */\n  baseSha256: string\n  /** Unified-diff patch the LLM drafted (relative to `target.absolutePath`). */\n  patch: string\n  /** One-line summary the operator sees in the report / PR title. */\n  summary: string\n  /** Multi-line rationale for the PR body — finding context + LLM reasoning. */\n  rationale: string\n  /** Carry-forward from the finding so the apply gate can check the threshold. */\n  confidence: number\n  /** Carry-forward severity for prioritization. */\n  severity: AnalystFinding['severity']\n}\n\nexport interface CreateSurfaceImprovementAdapterOpts {\n  surfaces: AgentSurfaces\n  repoRoot: string\n  /**\n   * LLM-draft callback. Given a finding + current file content + the\n   * resolved target, returns a unified-diff patch + summary + rationale.\n   *\n   * Required — the substrate doesn't ship a hardcoded prompt; the agent\n   * author picks the model (Haiku for cheap routine drafts, Sonnet for\n   * substantive prompt rewrites, etc.) via this callback.\n   */\n  draftPatch: (input: DraftPatchInput) => Promise<DraftPatchOutput>\n  /**\n   * Apply mode:\n   *   `write` — `git apply` in-place; operator reviews via `git diff`\n   *   `open-pr` — branch + commit + push + `gh pr create`\n   *   `none` — never apply; collect proposals for the report only\n   *\n   * The `apply` method honours this even when the loop calls it; the\n   * effective behaviour is also gated on the per-finding confidence\n   * threshold via `runAnalystLoop`'s `autoApply` policy.\n   */\n  mode?: 'write' | 'open-pr' | 'none'\n  /** When `mode === 'open-pr'`, the base branch new PRs target. Default: `main`. */\n  baseBranch?: string\n  /** Required for `mode === 'open-pr'` — the GH owner/repo (`tangle-network/tax-agent`). */\n  ghRepo?: string\n  /**\n   * When the resolved target doesn't exist, allow the substrate to\n   * CREATE the file (for `knowledge.wiki`, `new-tool` subjects). Default\n   * true for those kinds, false for `system-prompt` / `rubric` / etc.\n   * (named sections that don't exist are a contract violation, not a\n   * scaffolding opportunity).\n   */\n  allowCreateForKinds?: ReadonlyArray<FindingSubject['kind']>\n}\n\nexport interface DraftPatchInput {\n  finding: AnalystFinding\n  subject: FindingSubject\n  target: ResolvedSurface\n  /** Current file content (empty string when `intent === 'create-new'`). */\n  currentContent: string\n}\n\nexport interface DraftPatchOutput {\n  /** Unified diff against the current file content. Empty string skips this finding. */\n  patch: string\n  /** One-line summary for the operator. */\n  summary: string\n  /** Multi-line rationale for the PR body. */\n  rationale: string\n}\n\n// ── factory ──────────────────────────────────────────────────────────\n\nconst DEFAULT_CREATE_KINDS: ReadonlyArray<FindingSubject['kind']> = [\n  'knowledge.wiki',\n  'knowledge.claim',\n  'knowledge.raw',\n  'new-tool',\n]\n\nexport function createSurfaceImprovementAdapter(\n  opts: CreateSurfaceImprovementAdapterOpts,\n): ImprovementAdapter<SurfaceImprovementEdit> {\n  const mode = opts.mode ?? 'none'\n  const allowCreate = opts.allowCreateForKinds ?? DEFAULT_CREATE_KINDS\n\n  return {\n    async proposeFromFindings(findings) {\n      const edits: SurfaceImprovementEdit[] = []\n      const errors: Array<{ findingId: string; subject: string; message: string }> = []\n      let skipped = 0\n\n      for (const f of findings) {\n        const subject = parseFindingSubject(f.subject)\n        if (subject === null) {\n          if (f.subject !== undefined) {\n            errors.push({\n              findingId: f.finding_id,\n              subject: f.subject,\n              message: 'subject does not parse against the finding-subject grammar',\n            })\n          } else {\n            // Subject-less findings are descriptive, not actionable —\n            // legitimate; count in `skipped` not `errors`.\n            skipped += 1\n          }\n          continue\n        }\n\n        // `cluster` findings (failure-mode) are evidence, not mutations.\n        if (subject.kind === 'cluster') {\n          skipped += 1\n          continue\n        }\n\n        // `agent-knowledge:*` findings flow to the KnowledgeAdapter;\n        // the ImprovementAdapter skips them so subjects don't double-route.\n        if (subject.kind.startsWith('knowledge.')) {\n          skipped += 1\n          continue\n        }\n\n        const target = resolveSubjectPath(subject, opts.surfaces, opts.repoRoot)\n        if (target === null) {\n          errors.push({\n            findingId: f.finding_id,\n            subject: f.subject ?? '',\n            message: `subject kind \"${subject.kind}\" targets an undeclared surface; declare it in AgentSurfaces or stop emitting this subject`,\n          })\n          continue\n        }\n\n        if (target.intent === 'create-new' && !allowCreate.includes(subject.kind)) {\n          errors.push({\n            findingId: f.finding_id,\n            subject: f.subject ?? '',\n            message: `target ${target.repoRelativePath} does not exist; the kind \"${subject.kind}\" requires an existing target (analyst named a section that isn't in the codebase)`,\n          })\n          continue\n        }\n\n        const currentContent = target.exists ? readFileSync(target.absolutePath, 'utf-8') : ''\n\n        let draft: DraftPatchOutput\n        try {\n          draft = await opts.draftPatch({ finding: f, subject, target, currentContent })\n        } catch (err) {\n          errors.push({\n            findingId: f.finding_id,\n            subject: f.subject ?? '',\n            message: `draftPatch threw: ${err instanceof Error ? err.message : String(err)}`,\n          })\n          continue\n        }\n\n        if (draft.patch.trim().length === 0) {\n          skipped += 1\n          continue\n        }\n\n        edits.push({\n          id: `imp-${f.finding_id}`,\n          sourceFindingId: f.finding_id,\n          subject,\n          target,\n          baseSha256: sha256(currentContent),\n          patch: draft.patch,\n          summary: draft.summary,\n          rationale: draft.rationale,\n          confidence: f.confidence,\n          severity: f.severity,\n        })\n      }\n\n      return { edits, skipped, errors }\n    },\n\n    async apply(edits) {\n      const applied: string[] = []\n      const warnings: string[] = []\n\n      if (mode === 'none') {\n        warnings.push(\n          'createSurfaceImprovementAdapter: mode=none; no edits applied — adjust manifest.autoApply.improvement.mode',\n        )\n        return { applied, warnings }\n      }\n\n      if (mode === 'open-pr' && !opts.ghRepo) {\n        warnings.push(\n          'createSurfaceImprovementAdapter: mode=open-pr requires `ghRepo`; falling back to no-op',\n        )\n        return { applied, warnings }\n      }\n\n      for (const edit of edits) {\n        // Race-detection: confirm the file content hasn't moved since the\n        // patch was drafted. A diff applied against drifted content is a\n        // recipe for silent corruption.\n        const current = edit.target.exists ? readFileSync(edit.target.absolutePath, 'utf-8') : ''\n        if (sha256(current) !== edit.baseSha256) {\n          warnings.push(\n            `${edit.target.repoRelativePath}: base SHA mismatch; file changed after draft. Skipping.`,\n          )\n          continue\n        }\n\n        const ok = applyPatchInPlace(edit, opts.repoRoot)\n        if (!ok) {\n          warnings.push(`${edit.target.repoRelativePath}: git apply failed`)\n          continue\n        }\n        applied.push(edit.target.repoRelativePath)\n      }\n\n      if (mode === 'open-pr' && applied.length > 0 && opts.ghRepo) {\n        const prUrl = openPullRequest(\n          applied,\n          edits.filter((e) => applied.includes(e.target.repoRelativePath)),\n          opts.repoRoot,\n          opts.ghRepo,\n          opts.baseBranch ?? 'main',\n        )\n        if (prUrl) warnings.push(`opened PR: ${prUrl}`)\n        else warnings.push('PR creation failed; edits are committed to a local branch only')\n      }\n\n      return { applied, warnings }\n    },\n  }\n}\n\n// ── apply helpers ────────────────────────────────────────────────────\n\nfunction applyPatchInPlace(edit: SurfaceImprovementEdit, repoRoot: string): boolean {\n  const result = spawnSync('git', ['apply', '--whitespace=fix', '-p0', '-'], {\n    cwd: repoRoot,\n    input: edit.patch,\n    encoding: 'utf-8',\n  })\n  return result.status === 0\n}\n\nfunction openPullRequest(\n  paths: ReadonlyArray<string>,\n  edits: ReadonlyArray<SurfaceImprovementEdit>,\n  repoRoot: string,\n  ghRepo: string,\n  baseBranch: string,\n): string | null {\n  const branch = `analyst-loop/${Date.now()}-${edits[0]?.sourceFindingId.slice(0, 12) ?? 'edits'}`\n  // Create branch, stage, commit\n  const checkout = spawnSync('git', ['checkout', '-b', branch], { cwd: repoRoot })\n  if (checkout.status !== 0) return null\n  const add = spawnSync('git', ['add', ...paths], { cwd: repoRoot })\n  if (add.status !== 0) return null\n  const title = `analyst-loop: ${edits[0]?.summary ?? `${edits.length} improvement edits`}`\n  const body = [\n    `Automated analyst-loop edits — review carefully before merge.`,\n    '',\n    `Source findings:`,\n    ...edits.map(\n      (e) =>\n        `  - ${e.sourceFindingId} (confidence ${e.confidence.toFixed(2)}, severity ${e.severity})`,\n    ),\n    '',\n    'Rationales:',\n    ...edits.map((e) => `\\n## ${e.target.repoRelativePath}\\n\\n${e.rationale}`),\n  ].join('\\n')\n  const commit = spawnSync('git', ['commit', '-m', title, '-m', body], { cwd: repoRoot })\n  if (commit.status !== 0) return null\n  const push = spawnSync('git', ['push', '-u', 'origin', branch], { cwd: repoRoot })\n  if (push.status !== 0) return null\n  const pr = spawnSync(\n    'gh',\n    [\n      'pr',\n      'create',\n      '--repo',\n      ghRepo,\n      '--title',\n      title,\n      '--body',\n      body,\n      '--base',\n      baseBranch,\n      '--head',\n      branch,\n    ],\n    { cwd: repoRoot, encoding: 'utf-8' },\n  )\n  if (pr.status !== 0) return null\n  return pr.stdout.trim()\n}\n\nfunction sha256(s: string): string {\n  // node:crypto is dynamic-imported lazily so the adapter can be tested in\n  // environments without crypto (browser tests, mocked envs).\n  const crypto = require('node:crypto') as typeof import('node:crypto')\n  return crypto.createHash('sha256').update(s, 'utf-8').digest('hex')\n}\n","/**\n * Substrate-default `KnowledgeAdapter` — wraps agent-knowledge's\n * `proposeFromFindings` + `applyKnowledgeWriteBlocks` with substrate\n * defaults (auto-lint after apply, source linkage via finding id).\n *\n * Every agent that ships a `.agent-knowledge/` tree uses this adapter\n * unmodified. Per-agent customization happens at the manifest level\n * (`autoApply.knowledge.confidenceThreshold`, etc.), not by writing a\n * new adapter.\n *\n * Lint discipline: after each apply we run agent-knowledge's\n * `lintKnowledgeIndex` to catch broken links / circular claims /\n * duplicate pages introduced by the new writes. Findings that fail the\n * post-apply lint are recorded in `warnings`; the apply itself is not\n * rolled back (lint failures are soft — humans review the wiki state).\n */\n\nimport type { AnalystFinding } from '@tangle-network/agent-eval'\nimport type { KnowledgeAdapter } from '../analyst-loop/types'\n\nexport interface CreateSurfaceKnowledgeAdapterOpts {\n  /** `.agent-knowledge/` root (absolute path the substrate writes blocks against). */\n  knowledgeRoot: string\n}\n\n/**\n * Build the adapter. We accept the agent-knowledge functions as DI so\n * the substrate stays decoupled from a specific agent-knowledge\n * version — the agent author imports them in their manifest module\n * and hands them to the factory.\n *\n * `proposeFromFindings(findings)` returns\n *   `{ proposals: KnowledgeProposal[]; skipped: number; errors: ... }`.\n *\n * `applyKnowledgeWriteBlocks(root, content)` returns\n *   `{ written: string[]; warnings: string[] }`.\n *\n * `lintKnowledgeIndex(index)` (optional) returns `KnowledgeLintFinding[]`.\n */\nexport interface KnowledgeAdapterDeps<TProposal> {\n  proposeFromFindings: (findings: ReadonlyArray<AnalystFinding>) => {\n    proposals: TProposal[]\n    skipped: number\n    errors: Array<{ findingId: string; subject: string; message: string }>\n  }\n  applyKnowledgeWriteBlocks: (\n    root: string,\n    proposalText: string,\n  ) => Promise<{ written: string[]; warnings: string[] }>\n  /**\n   * Optional post-apply lint hook. The substrate runs it after each\n   * batch of writes; failures land in `warnings` (the apply is not\n   * rolled back — lint signals drift to review, not block).\n   */\n  lintAfterApply?: (root: string) => Promise<ReadonlyArray<string>>\n}\n\nexport function createSurfaceKnowledgeAdapter<TProposal>(\n  opts: CreateSurfaceKnowledgeAdapterOpts,\n  deps: KnowledgeAdapterDeps<TProposal>,\n): KnowledgeAdapter<TProposal> {\n  return {\n    proposeFromFindings(findings) {\n      const batch = deps.proposeFromFindings(findings)\n      return {\n        proposals: batch.proposals,\n        skipped: batch.skipped,\n        errors: batch.errors,\n      }\n    },\n    async apply(proposals) {\n      const written: string[] = []\n      const warnings: string[] = []\n      for (const p of proposals) {\n        const proposalText = renderProposalAsWriteBlock(p)\n        if (proposalText === null) {\n          warnings.push(\n            `proposal has no writeBlocks/content; skipping (sourceFindingId=${getSourceFindingId(p)})`,\n          )\n          continue\n        }\n        try {\n          const r = await deps.applyKnowledgeWriteBlocks(opts.knowledgeRoot, proposalText)\n          written.push(...r.written)\n          warnings.push(...r.warnings)\n        } catch (err) {\n          warnings.push(\n            `applyKnowledgeWriteBlocks failed: ${err instanceof Error ? err.message : String(err)}`,\n          )\n        }\n      }\n      if (deps.lintAfterApply && written.length > 0) {\n        try {\n          const lintIssues = await deps.lintAfterApply(opts.knowledgeRoot)\n          for (const issue of lintIssues) warnings.push(`lint: ${issue}`)\n        } catch (err) {\n          warnings.push(\n            `lintAfterApply failed: ${err instanceof Error ? err.message : String(err)}`,\n          )\n        }\n      }\n      return { written, warnings }\n    },\n  }\n}\n\n/**\n * Pluck the canonical write-block text from a proposal regardless of\n * which exact agent-knowledge version produced it. We accept either:\n *   - `{ writeBlocks: Array<{ path, content }> }` — the typed shape\n *     1.3.0+ emits\n *   - `{ proposalText: string }` — legacy single-block shape\n *   - `{ content: string }` — minimal raw form\n *\n * Returns `null` when nothing parseable is present (warned upstream).\n */\nfunction renderProposalAsWriteBlock(p: unknown): string | null {\n  if (!p || typeof p !== 'object') return null\n  const obj = p as Record<string, unknown>\n  if (Array.isArray(obj.writeBlocks)) {\n    const blocks = obj.writeBlocks as Array<{ path?: string; content?: string }>\n    if (blocks.length === 0) return null\n    return blocks\n      .map((b) => (typeof b.content === 'string' ? b.content : ''))\n      .filter((s) => s.length > 0)\n      .join('\\n\\n')\n  }\n  if (typeof obj.proposalText === 'string') return obj.proposalText\n  if (typeof obj.content === 'string') return obj.content\n  return null\n}\n\nfunction getSourceFindingId(p: unknown): string {\n  if (!p || typeof p !== 'object') return '<unknown>'\n  const obj = p as Record<string, unknown>\n  if (typeof obj.sourceFindingId === 'string') return obj.sourceFindingId\n  if (typeof obj.id === 'string') return obj.id\n  return '<unknown>'\n}\n","/**\n * `OutcomeMeasurement` — the missing metric that turns the analyst\n * loop from \"observability\" into \"self-improvement\".\n *\n * Without this hook, the loop reports process counts (`findings: 42`,\n * `applied: 7`) and never proves the applied edits actually improved\n * anything. With this hook, the substrate re-runs the cohort against\n * the same personas after each apply pass and reports a composite\n * score delta. A negative delta is the substrate's strongest signal\n * to either roll back or surface for review.\n *\n * Wiring is intentionally simple: pass the manifest + the `runAgentEval`\n * function and a list of `personaIds` to re-run. The wrapper:\n *   1. Captures the baseline composite from the just-finished run.\n *   2. After `runAnalystLoop` returns, re-invokes `runAgentEval` against\n *      the same persona slice.\n *   3. Computes the delta and appends to `loop-report.json`.\n *   4. If `rollbackOnRegression` and delta < 0, reverts applied edits.\n */\n\nimport type { RunAnalystLoopResult } from '../analyst-loop/types'\n\nexport interface OutcomeMeasurement {\n  /** Baseline composite before applies — captured from the most-recent eval run. */\n  baselineComposite: number\n  /** Composite after re-running the cohort with applied edits. */\n  afterComposite: number\n  /** `afterComposite - baselineComposite`. Positive = the loop improved the agent. */\n  delta: number\n  /** Per-persona deltas for finer-grained review. */\n  perPersona: ReadonlyArray<{ personaId: string; before: number; after: number; delta: number }>\n  /** When the substrate rolled back applies due to regression, the paths reverted. */\n  rolledBackPaths: ReadonlyArray<string>\n}\n\nexport interface OutcomeMeasurementOpts {\n  /** Composite scores from the run that produced the findings. */\n  baseline: ReadonlyArray<{ personaId: string; composite: number }>\n  /**\n   * Re-run callback — the substrate invokes this after applies. The\n   * agent author provides their `runAgentEval`-equivalent so the\n   * substrate can ask \"score this persona slice now.\"\n   *\n   * The callback SHOULD reuse the same cohort + judges + variant as\n   * the baseline run; only the agent's mutable surfaces have changed.\n   */\n  reRunCohort: (\n    personaIds: ReadonlyArray<string>,\n  ) => Promise<ReadonlyArray<{ personaId: string; composite: number }>>\n  /** When `true`, applied edits are reverted on negative delta. Default `false`. */\n  rollbackOnRegression?: boolean\n  /** Callback to revert a list of paths (typically `git checkout HEAD --`). */\n  revert?: (paths: ReadonlyArray<string>) => Promise<void>\n}\n\n/**\n * Run `runAnalystLoop` and stamp an `OutcomeMeasurement` onto the\n * result. The substrate calls this after each canonical eval; the\n * delta lands in `loop-report.json` for cross-run trend analysis.\n *\n * The function returns the original `RunAnalystLoopResult` enriched\n * with `outcome` so callers stay backwards-compatible (the field is\n * optional on the type; missing means no measurement was wired).\n */\nexport async function measureOutcome<TProposal, TEdit>(\n  result: RunAnalystLoopResult<TProposal, TEdit>,\n  opts: OutcomeMeasurementOpts,\n): Promise<RunAnalystLoopResult<TProposal, TEdit> & { outcome: OutcomeMeasurement }> {\n  const applied = result.knowledge?.applied ?? []\n  const improvementsApplied = result.improvement?.applied ?? []\n  const allApplied = [...applied, ...improvementsApplied]\n\n  // No applies → no outcome to measure. Return a zero-delta to keep the\n  // shape stable for consumers; baseline / after equal.\n  if (allApplied.length === 0) {\n    return {\n      ...result,\n      outcome: {\n        baselineComposite: meanComposite(opts.baseline),\n        afterComposite: meanComposite(opts.baseline),\n        delta: 0,\n        perPersona: opts.baseline.map((b) => ({\n          personaId: b.personaId,\n          before: b.composite,\n          after: b.composite,\n          delta: 0,\n        })),\n        rolledBackPaths: [],\n      },\n    }\n  }\n\n  const personaIds = opts.baseline.map((b) => b.personaId)\n  const after = await opts.reRunCohort(personaIds)\n  const afterByPersona = new Map(after.map((r) => [r.personaId, r.composite]))\n\n  const perPersona = opts.baseline.map((b) => {\n    const a = afterByPersona.get(b.personaId) ?? b.composite\n    return { personaId: b.personaId, before: b.composite, after: a, delta: a - b.composite }\n  })\n  const baselineComposite = meanComposite(opts.baseline)\n  const afterComposite = meanComposite(after)\n  const delta = afterComposite - baselineComposite\n\n  let rolledBackPaths: string[] = []\n  if (delta < 0 && opts.rollbackOnRegression && opts.revert) {\n    await opts.revert(allApplied)\n    rolledBackPaths = [...allApplied]\n  }\n\n  return {\n    ...result,\n    outcome: {\n      baselineComposite,\n      afterComposite,\n      delta,\n      perPersona,\n      rolledBackPaths,\n    },\n  }\n}\n\nfunction meanComposite(rows: ReadonlyArray<{ composite: number }>): number {\n  if (rows.length === 0) return 0\n  return rows.reduce((acc, r) => acc + r.composite, 0) / rows.length\n}\n","/**\n * `createProductionTraceSink` — the production-side capture primitive\n * every vertical agent's chat handler wires in once.\n *\n * Closes the data-leak: until now, every production chat session emitted\n * zero replayable trace data. Eval runs captured everything; production\n * captured nothing. RL training corpora, research analyses, and the\n * self-improvement loop all ran on synthetic personas. This primitive\n * makes every real user conversation a piece of data the downstream\n * channels (Prime Intellect, GEPA, research, canaries, analyst loop)\n * can consume.\n *\n * Wiring (per agent, ~10 lines in the production chat handler):\n *\n *   ```ts\n *   const sink = createProductionTraceSink({\n *     projectId: 'tax-agent',\n *     otlp: { endpoint: env.LANGFUSE_OTEL_ENDPOINT, authHeader: env.LANGFUSE_OTEL_AUTH },\n *     runRecordStore: drizzleRunRecordStore(db),\n *     feedbackStore: drizzleFeedbackStore(db),\n *   })\n *\n *   const emitter = new TraceEmitter(sink.traceStore, {\n *     onRunComplete: [sink.onRunComplete],\n *   })\n *   await emitter.startRun({\n *     scenarioId: sessionId,\n *     projectId: 'tax-agent',\n *     layer: 'app-runtime',\n *   })\n *   // ... existing chat flow, with LLM/tool spans emitted ...\n *   await emitter.endRun({ pass, score })\n *   // sink.onRunComplete fires automatically:\n *   //   1. composes RunRecord, persists to runRecordStore\n *   //   2. exports run as OTLP, POSTs to Langfuse\n *   //   3. logs failures (does NOT throw — never crashes the chat handler)\n *   ```\n *\n * Separately, the agent's feedback endpoint calls `sink.recordFeedback`\n * to write user thumbs-up/thumbs-down (or richer labels) into the\n * FeedbackTrajectory store — the corpus DPO/KTO trainers consume.\n *\n * Cloudflare Worker semantics: the sink buffers spans in memory through\n * the request lifetime (via agent-eval's `InMemoryTraceStore`).\n * `onRunComplete` is awaited (typically inside `ctx.waitUntil`) so the\n * worker stays alive long enough to flush. The OTLP POST is fire-and-\n * forget — failures are logged but never surface to the chat user.\n */\n\nimport {\n  exportRunAsOtlp,\n  type FeedbackLabel,\n  type FeedbackTrajectoryStore,\n  InMemoryTraceStore,\n  type RunCompleteHook,\n  type RunCompleteHookContext,\n  type TraceStore,\n} from '@tangle-network/agent-eval'\n\n// ── public API ───────────────────────────────────────────────────────\n\nexport interface ProductionTraceSinkOpts {\n  /**\n   * Stable agent identifier — appears in OTLP `service.name`, every\n   * RunRecord row, every FeedbackTrajectory row. MUST match the\n   * agent's repo name to keep cross-repo telemetry joinable.\n   */\n  projectId: string\n\n  /**\n   * OTLP forwarding target. Typically Langfuse's HTTP receiver. Omit to\n   * disable OTLP export (RunRecord persistence still works).\n   *\n   * `authHeader` is the full header value (e.g. `Basic <base64>`); the\n   * sink does NOT base64-encode for you.\n   */\n  otlp?: {\n    endpoint: string\n    authHeader?: string\n    /** Optional resource attributes merged into every span batch. */\n    resourceAttributes?: Record<string, string | number | boolean>\n  }\n\n  /**\n   * Durable RunRecord persistence. Per-vertical agents implement this\n   * over their own DB (Drizzle / D1 / Postgres). Optional — when omitted,\n   * RunRecords stay in-memory and are lost when the worker isolate ends.\n   */\n  runRecordStore?: ProductionRunRecordStore\n\n  /**\n   * Durable feedback persistence. Used by `recordFeedback`; agents wire\n   * their thumbs-up/down + free-text feedback endpoints to call into the\n   * sink, which writes a `FeedbackLabel` into a `FeedbackTrajectory`.\n   *\n   * Optional — when omitted, `recordFeedback` is a no-op.\n   */\n  feedbackStore?: FeedbackTrajectoryStore\n\n  /**\n   * Pluggable fetch — defaults to globalThis.fetch. Tests inject a\n   * mocked fetch.\n   */\n  fetch?: typeof fetch\n\n  /**\n   * Pluggable structured logger — defaults to console.warn for failures.\n   * The sink NEVER throws on flush failure; it logs and returns.\n   */\n  log?: (msg: string, fields?: Record<string, unknown>) => void\n}\n\n/**\n * Durable per-agent RunRecord persistence. Each vertical implements over\n * its own DB. The sink calls `append` once per `endRun`.\n */\nexport interface ProductionRunRecordStore {\n  append(record: ProductionRunRecord): Promise<void>\n}\n\n/**\n * Minimal canonical row the sink composes on `endRun`. Per-agent DB\n * adapters extend with their own fields; the sink only writes what\n * the runtime canonically captures.\n */\nexport interface ProductionRunRecord {\n  runId: string\n  projectId: string\n  scenarioId: string\n  variantId?: string\n  startedAt: string\n  endedAt: string\n  status: 'completed' | 'failed' | 'aborted'\n  pass?: boolean\n  score?: number\n  failureClass?: string\n  notes?: string\n  /** Echoed back from `emitter.startRun({ tags })`. */\n  tags?: Record<string, string>\n  /** Span row count — useful for diagnostics. */\n  spanCount: number\n}\n\nexport interface ProductionTraceSink {\n  /**\n   * The TraceStore the agent's `TraceEmitter` writes to. In-memory by\n   * design: spans accumulate through the chat session, flush at\n   * `onRunComplete`. The runtime never reads from this store directly —\n   * the sink reads from it during the flush step.\n   */\n  traceStore: TraceStore\n\n  /**\n   * Hook the agent passes into\n   * `new TraceEmitter(store, { onRunComplete: [sink.onRunComplete] })`.\n   * Fires once per chat session at `endRun` time. Composes the\n   * RunRecord, persists, and ships OTLP. Errors are logged, never thrown.\n   */\n  onRunComplete: RunCompleteHook\n\n  /**\n   * Append a user feedback label (thumbs-up/down, correction, severity)\n   * to the FeedbackTrajectory for a completed run. Creates a minimal\n   * trajectory anchored to the run if one doesn't exist; appends the\n   * label if it does. No-op when `feedbackStore` is undefined.\n   *\n   * Returns the trajectory id (existing or freshly created) for the\n   * agent's API to link back to the session, or `null` on no-op /\n   * error.\n   */\n  recordFeedback(input: RecordFeedbackInput): Promise<string | null>\n}\n\nexport interface RecordFeedbackInput {\n  /** Run id from the original `emitter.startRun`. */\n  runId: string\n  /** The user-supplied feedback label. */\n  label: FeedbackLabel\n  /** Optional scenario id (mirrors the run's). */\n  scenarioId?: string\n  /** Optional pre-existing trajectory id if the agent tracks them separately. */\n  trajectoryId?: string\n}\n\n// ── factory ──────────────────────────────────────────────────────────\n\nexport function createProductionTraceSink(opts: ProductionTraceSinkOpts): ProductionTraceSink {\n  const log = opts.log ?? defaultLog\n  const fetchImpl = opts.fetch ?? globalThis.fetch\n  const traceStore = new InMemoryTraceStore()\n\n  const onRunComplete: RunCompleteHook = async (ctx: RunCompleteHookContext) => {\n    // 1. Compose canonical RunRecord and persist if a store is wired.\n    if (opts.runRecordStore) {\n      try {\n        const record = await composeRunRecord(traceStore, ctx, opts.projectId)\n        await opts.runRecordStore.append(record)\n      } catch (err) {\n        log('runRecordStore.append failed', {\n          runId: ctx.runId,\n          error: err instanceof Error ? err.message : String(err),\n        })\n      }\n    }\n\n    // 2. Export the run as OTLP and POST to the configured collector.\n    if (opts.otlp) {\n      try {\n        const resourceAttrs: Record<string, string | number | boolean> = {\n          'service.name': opts.projectId,\n          ...(opts.otlp.resourceAttributes ?? {}),\n        }\n        const otlpPayload = await exportRunAsOtlp(traceStore, ctx.runId, resourceAttrs)\n        const headers: Record<string, string> = { 'content-type': 'application/json' }\n        if (opts.otlp.authHeader) headers.authorization = opts.otlp.authHeader\n        const res = await fetchImpl(opts.otlp.endpoint, {\n          method: 'POST',\n          headers,\n          body: JSON.stringify(otlpPayload),\n        })\n        if (!res.ok) {\n          log('OTLP POST non-2xx', {\n            runId: ctx.runId,\n            status: res.status,\n            endpoint: opts.otlp.endpoint,\n          })\n        }\n      } catch (err) {\n        log('OTLP POST threw', {\n          runId: ctx.runId,\n          error: err instanceof Error ? err.message : String(err),\n          endpoint: opts.otlp.endpoint,\n        })\n      }\n    }\n  }\n\n  const recordFeedback = async (input: RecordFeedbackInput): Promise<string | null> => {\n    if (!opts.feedbackStore) return null\n    const trajectoryId = input.trajectoryId ?? `traj-${input.runId}`\n    try {\n      const existing = await opts.feedbackStore.get(trajectoryId)\n      if (existing) {\n        await opts.feedbackStore.appendLabel(trajectoryId, input.label)\n        return trajectoryId\n      }\n      // Create a minimal trajectory anchored to the run; the agent's eval-time\n      // pipeline can backfill richer task / attempts data when it replays.\n      await opts.feedbackStore.save({\n        id: trajectoryId,\n        projectId: opts.projectId,\n        scenarioId: input.scenarioId ?? input.runId,\n        task: { intent: 'chat', context: { runId: input.runId } },\n        attempts: [],\n        labels: [input.label],\n        createdAt: new Date().toISOString(),\n      })\n      return trajectoryId\n    } catch (err) {\n      log('feedbackStore write failed', {\n        runId: input.runId,\n        error: err instanceof Error ? err.message : String(err),\n      })\n      return null\n    }\n  }\n\n  return { traceStore, onRunComplete, recordFeedback }\n}\n\n// ── helpers ──────────────────────────────────────────────────────────\n\nasync function composeRunRecord(\n  store: TraceStore,\n  ctx: RunCompleteHookContext,\n  projectId: string,\n): Promise<ProductionRunRecord> {\n  const run = await store.getRun(ctx.runId)\n  const spans = await store.spans({ runId: ctx.runId })\n  // Run timestamps are epoch ms in the trace schema; consumers downstream\n  // expect ISO strings (DB columns, dashboards, dataset joins) so we convert\n  // at the sink boundary.\n  const now = Date.now()\n  const startedAtMs = run?.startedAt ?? now\n  const endedAtMs = run?.endedAt ?? now\n  return {\n    runId: ctx.runId,\n    projectId,\n    scenarioId: run?.scenarioId ?? ctx.runId,\n    variantId: run?.variantId,\n    startedAt: new Date(startedAtMs).toISOString(),\n    endedAt: new Date(endedAtMs).toISOString(),\n    status: ctx.status,\n    pass: ctx.outcome?.pass,\n    score: ctx.outcome?.score,\n    failureClass: ctx.outcome?.failureClass,\n    notes: ctx.outcome?.notes,\n    tags: run?.tags,\n    spanCount: spans.length,\n  }\n}\n\nfunction defaultLog(msg: string, fields?: Record<string, unknown>): void {\n  if (fields) console.warn(`[production-trace-sink] ${msg}`, fields)\n  else console.warn(`[production-trace-sink] 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A surface that's not needed\n * (e.g. an agent with no RAG corpora) is simply omitted; the loop\n * refuses to route those subjects rather than fabricating a target.\n */\n\nimport { existsSync } from 'node:fs'\nimport { isAbsolute, join } from 'node:path'\nimport type { FindingSubject } from '@tangle-network/agent-eval'\n\n/**\n * Surface declarations. Every path is repo-relative (or absolute) at\n * `defineAgent` time. At resolution time, paths are joined against the\n * agent's `repoRoot`.\n *\n * `systemPrompt`, `tools`, `personas` are DIRECTORIES; the loop appends\n * `<section>.md`, `<tool>/README.md`, `<persona-id>.yaml` etc.\n * `rubric`, `outputSchema` are SINGLE FILES; the loop edits them in\n * place.\n *\n * `knowledge` is the agent-knowledge root (typically `.agent-knowledge`);\n * `applyKnowledgeWriteBlocks` writes pages relative to it.\n *\n * Optional surfaces (`scaffolding`, `memory`, `rag`, `outputSchema`)\n * can be omitted — the loop will reject findings targeting them with a\n * clear log message instead of fabricating a path.\n */\nexport interface AgentSurfaces {\n  /** Directory containing one markdown file per system-prompt section. */\n  systemPrompt: string\n  /** Directory containing one subdir per tool (`<tool>/README.md`). */\n  tools: string\n  /** Single file (TypeScript module) defining the rubric weights + dimensions. */\n  rubric: string\n  /** Knowledge-base root; typically `.agent-knowledge`. */\n  knowledge: string\n  /** Directory containing one YAML/JSON file per persona. */\n  personas: string\n  /** Optional: directory containing scaffolding rules (precondition checks, retry policies). */\n  scaffolding?: string\n  /** Optional: memory store path (JSONL / SQLite / DB). */\n  memory?: string\n  /** Optional: directory containing RAG corpora (`<corpus>/<doc-id>.md`). */\n  rag?: string\n  /** Optional: single file defining the output schema (Zod / JSON Schema). */\n  outputSchema?: string\n}\n\nexport interface ResolvedSurface {\n  /** Absolute filesystem path the operator can `cat` / `vim`. */\n  absolutePath: string\n  /** Repo-relative path for PR descriptions, diffs, audit logs. */\n  repoRelativePath: string\n  /** Whether the path currently exists on disk. */\n  exists: boolean\n  /** The substrate's intent: edit an existing file or create a new one. */\n  intent: 'edit-existing' | 'create-new'\n}\n\n/**\n * Resolve a parsed `FindingSubject` to the file path the substrate\n * should edit (or create) on disk.\n *\n * Returns `null` when:\n *   - the subject targets a surface the agent didn't declare\n *     (e.g. `rag:*` when `surfaces.rag` is undefined), OR\n *   - the subject is a `cluster` (failure-mode emits these as evidence,\n *     not actionable mutations — they don't route to a file).\n *\n * Returns a `ResolvedSurface` with `intent: 'create-new'` when the\n * subject names a path that doesn't yet exist (e.g. a new wiki page).\n * The caller chooses whether to honour the create — for tightly-managed\n * surfaces like `systemPrompt` it's usually a contract violation\n * (the analyst named a section that doesn't exist); for `knowledge`\n * it's the whole point.\n */\nexport function resolveSubjectPath(\n  subject: FindingSubject,\n  surfaces: AgentSurfaces,\n  repoRoot: string,\n): ResolvedSurface | null {\n  const candidates = candidatePathsForSubject(subject, surfaces)\n  if (candidates.length === 0) return null\n\n  // Probe candidates in order, preferring the first one that exists on disk.\n  // Lets the substrate accept both the flat `<section>.md` convention and\n  // the skill-dir `<section>/SKILL.md` convention without forcing one layout.\n  // When none exists, fall back to the first candidate (canonical create-new).\n  for (const rel of candidates) {\n    const abs = isAbsolute(rel) ? rel : join(repoRoot, rel)\n    if (existsSync(abs)) {\n      return { absolutePath: abs, repoRelativePath: rel, exists: true, intent: 'edit-existing' }\n    }\n  }\n  const fallback = candidates[0]!\n  const fallbackAbs = isAbsolute(fallback) ? fallback : join(repoRoot, fallback)\n  return {\n    absolutePath: fallbackAbs,\n    repoRelativePath: fallback,\n    exists: false,\n    intent: 'create-new',\n  }\n}\n\nfunction candidatePathsForSubject(\n  subject: FindingSubject,\n  surfaces: AgentSurfaces,\n): ReadonlyArray<string> {\n  switch (subject.kind) {\n    case 'knowledge.wiki':\n    case 'knowledge.stale':\n      return [join(surfaces.knowledge, `${subject.slug}.md`)]\n    case 'knowledge.claim':\n      // Claims land in a per-topic claims directory under the knowledge root.\n      return [join(surfaces.knowledge, 'claims', `${slugify(subject.topic)}.md`)]\n    case 'knowledge.raw':\n      return [join(surfaces.knowledge, 'raw', `${subject.sourceId}.md`)]\n    case 'system-prompt': {\n      const slug = slugify(subject.section)\n      // Prefer flat layout for create-new (canonical); probe skill-dir layout\n      // in case the existing repo (tax/legal/gtm/creative) uses\n      // `<section>/SKILL.md` already.\n      return [\n        join(surfaces.systemPrompt, `${slug}.md`),\n        join(surfaces.systemPrompt, slug, 'SKILL.md'),\n        join(surfaces.systemPrompt, slug, 'index.md'),\n      ]\n    }\n    case 'tool-doc':\n      if (subject.aspect) {\n        return [join(surfaces.tools, subject.tool, `${slugify(subject.aspect)}.md`)]\n      }\n      // tool-doc default: `<tool>/README.md`; also probe `<tool>.md` for flat\n      // tool-list repos.\n      return [\n        join(surfaces.tools, subject.tool, 'README.md'),\n        join(surfaces.tools, `${subject.tool}.md`),\n      ]\n    case 'new-tool':\n      return [join(surfaces.tools, subject.name, 'README.md')]\n    case 'rag':\n      if (!surfaces.rag) return []\n      return [join(surfaces.rag, subject.corpus, `${subject.docId}.md`)]\n    case 'memory':\n      if (!surfaces.memory) return []\n      return [join(surfaces.memory, `${slugify(subject.key)}.json`)]\n    case 'scaffolding':\n      if (!surfaces.scaffolding) return []\n      return [join(surfaces.scaffolding, `${slugify(subject.concern)}.md`)]\n    case 'output-schema':\n      if (!surfaces.outputSchema) return []\n      return [surfaces.outputSchema]\n    case 'websearch.outdated':\n    case 'prior-run-summary':\n      // Stale signals don't map to a single file — handled by the knowledge\n      // adapter as `agent-knowledge:stale:*` after operator review.\n      return []\n    case 'cluster':\n      // failure-mode cluster labels are evidence, not mutations.\n      return []\n  }\n}\n\nfunction slugify(s: string): string {\n  return (\n    s\n      .toLowerCase()\n      .replace(/[^a-z0-9-]+/g, '-')\n      .replace(/^-+|-+$/g, '')\n      .slice(0, 200) || 'untitled'\n  )\n}\n\n/**\n * Validate that every declared surface exists on disk under `repoRoot`.\n *\n * Returns an array of `SurfaceValidationIssue` — empty when all required\n * surfaces resolve. `defineAgent` throws with the issues rendered, so\n * a misconfigured manifest fails at startup (not at the first finding\n * the loop produces 20 minutes later).\n */\nexport interface SurfaceValidationIssue {\n  surface: keyof AgentSurfaces\n  path: string\n  reason: 'missing' | 'not-directory' | 'not-file'\n}\n\nexport function validateSurfaces(\n  surfaces: AgentSurfaces,\n  repoRoot: string,\n): ReadonlyArray<SurfaceValidationIssue> {\n  const issues: SurfaceValidationIssue[] = []\n  const dirSurfaces: ReadonlyArray<keyof AgentSurfaces> = [\n    'systemPrompt',\n    'tools',\n    'personas',\n    'knowledge',\n  ]\n  const fileSurfaces: ReadonlyArray<keyof AgentSurfaces> = ['rubric']\n  const optionalDirSurfaces: ReadonlyArray<keyof AgentSurfaces> = ['scaffolding', 'memory', 'rag']\n  const optionalFileSurfaces: ReadonlyArray<keyof AgentSurfaces> = ['outputSchema']\n\n  for (const key of dirSurfaces) {\n    const p = surfaces[key] as string | undefined\n    if (!p) {\n      issues.push({ surface: key, path: '', reason: 'missing' })\n      continue\n    }\n    const abs = isAbsolute(p) ? p : join(repoRoot, p)\n    if (!existsSync(abs)) {\n      issues.push({ surface: key, path: p, reason: 'missing' })\n    }\n  }\n  for (const key of fileSurfaces) {\n    const p = surfaces[key] as string | undefined\n    if (!p) {\n      issues.push({ surface: key, path: '', reason: 'missing' })\n      continue\n    }\n    const abs = isAbsolute(p) ? p : join(repoRoot, p)\n    if (!existsSync(abs)) {\n      issues.push({ surface: key, path: p, reason: 'missing' })\n    }\n  }\n  for (const key of [...optionalDirSurfaces, ...optionalFileSurfaces]) {\n    const p = surfaces[key] as string | undefined\n    if (p === undefined) continue\n    const abs = isAbsolute(p) ? p : join(repoRoot, p)\n    if (!existsSync(abs)) {\n      issues.push({ surface: key, path: p, reason: 'missing' })\n    }\n  }\n  return issues\n}\n\nexport function renderSurfaceIssues(\n  issues: ReadonlyArray<SurfaceValidationIssue>,\n  repoRoot: string,\n): string {\n  if (issues.length === 0) return ''\n  const lines = issues.map(\n    (i) => `  - ${i.surface}: ${i.path ? `\"${i.path}\"` : '<not set>'} (${i.reason})`,\n  )\n  return [\n    `Agent surface validation failed against repoRoot=${repoRoot}:`,\n    ...lines,\n    '',\n    'Fix the manifest: every required surface must point at an existing',\n    'directory (systemPrompt / tools / personas / knowledge) or file',\n    '(rubric). Optional surfaces (scaffolding / memory / rag / outputSchema)',\n    'may be omitted; the loop will reject findings targeting omitted',\n    'surfaces rather than fabricating a path.',\n  ].join('\\n')\n}\n","/**\n * `defineAgent` — typed, validated manifest API for declarative agent\n * configuration. The substrate consumes this manifest to wire the\n * canonical eval pattern + analyst self-improvement loop without any\n * per-vertical glue.\n *\n * Design goal: scale to 1000s of vertical agents. Every agent declares\n * its surfaces, rubric, runtime, and analyst configuration in ~50 lines.\n * No per-vertical `ImprovementAdapter`. No per-vertical CLI. No\n * fabricated paths.\n *\n * Validation: `defineAgent` runs `validateSurfaces` synchronously and\n * throws a structured error if any required surface is missing on\n * disk. The cost is one filesystem stat per surface (cheap); the\n * benefit is a manifest that can't ship broken.\n */\n\nimport type { TraceAnalystKindSpec } from '@tangle-network/agent-eval'\nimport type { RuntimeStreamEvent } from '../types'\nimport { type AgentSurfaces, renderSurfaceIssues, validateSurfaces } from './surfaces'\n\n// ── manifest ─────────────────────────────────────────────────────────\n\n/**\n * The full agent manifest. Each agent ships ONE of these.\n *\n * Generics:\n *   `TPersona` — the agent's persona shape (loaded from\n *     `surfaces.personas`). Defaults to `unknown` so the substrate's\n *     persona discovery (`loadPersonas`) can accept anything; per-agent\n *     code re-narrows when it matters.\n *   `TRunOutput` — the shape `runtime.act` returns. Used by the rubric\n *     scorers and emitted into the trace.\n */\nexport interface AgentManifest<TPersona = unknown, TRunOutput = unknown> {\n  /**\n   * Stable identifier — used as `projectId` in traces, as the analyst\n   * loop's `runId` prefix, and as the namespace under which findings\n   * are persisted. MUST match the agent's repo name to keep\n   * cross-repo telemetry joinable.\n   */\n  id: string\n\n  /**\n   * Filesystem root the substrate resolves surface paths against.\n   * Typically `process.cwd()` or a fixed absolute path. Use an\n   * absolute path when the agent's tests may run from subdirectories\n   * (vitest sometimes shifts cwd).\n   */\n  repoRoot: string\n\n  /**\n   * Map of mutable surfaces the self-improvement loop can edit. See\n   * `AgentSurfaces` — required: `systemPrompt`, `tools`, `rubric`,\n   * `knowledge`, `personas`. Optional: `scaffolding`, `memory`, `rag`,\n   * `outputSchema`.\n   *\n   * Every required path is validated at `defineAgent` time. Missing\n   * paths throw with the full list of offenders.\n   */\n  surfaces: AgentSurfaces\n\n  /**\n   * Rubric the substrate uses to score each run. Dimensions × weights\n   * × judges. The substrate computes the weighted composite and\n   * stamps it into the RunRecord.\n   */\n  rubric: AgentRubric<TRunOutput>\n\n  /**\n   * Runtime adapter — how the substrate INVOKES the agent against a\n   * persona. The `act` function takes a persona + a context (with the\n   * tracer the substrate threads through for span emission) and\n   * returns the run output the rubric will score.\n   *\n   * The agent's existing production runtime goes in here; the\n   * substrate is intentionally thin around it.\n   */\n  runtime: AgentRuntime<TPersona, TRunOutput>\n\n  /**\n   * Persona discovery — the substrate loads personas via this function\n   * at eval start. Can read from `surfaces.personas`, an API, or be\n   * hardcoded. The substrate calls it once per `runAgentEval` call;\n   * persona ordering is preserved.\n   */\n  personas: () => Promise<ReadonlyArray<TPersona>>\n\n  /**\n   * Analyst kinds the substrate runs against each persona's trace.\n   * Defaults to `DEFAULT_TRACE_ANALYST_KINDS` from agent-eval. Per-agent\n   * authors can prune (e.g. skip `knowledge-poisoning` when there's no\n   * knowledge base) or extend (custom domain kinds).\n   *\n   * Empty array disables the loop — useful for `pnpm eval --no-analyst`.\n   */\n  analystKinds: ReadonlyArray<TraceAnalystKindSpec>\n\n  /**\n   * Analyst LLM configuration. The substrate uses these for all four\n   * kinds (override per-kind via `analystKinds` if needed).\n   */\n  analyst: AnalystConfig\n\n  /**\n   * Auto-apply policy. Knowledge / improvement edits land only when\n   * `enabled === true` AND the source finding's confidence meets the\n   * threshold. `mode` controls how applies happen: `'write'` mutates\n   * files in-place; `'open-pr'` writes to a branch and opens a PR.\n   *\n   * Default: knowledge auto-applies at confidence ≥0.85 in `'write'`\n   * mode (wiki edits are git-reversible); improvement stays at\n   * `enabled: false` until the agent author has measured precision.\n   */\n  autoApply?: AutoApplyPolicy\n}\n\nexport interface AgentRubric<TRunOutput> {\n  /** Dimensions composing the weighted score. Weights sum to 1.0 by convention. */\n  dimensions: ReadonlyArray<RubricDimension<TRunOutput>>\n  /**\n   * Optional judges layered on top of deterministic dimensions. Each\n   * judge returns a score per dimension; the substrate averages judges\n   * (mean by default) for the LLM contribution.\n   */\n  judges?: ReadonlyArray<JudgeConfig<TRunOutput>>\n}\n\nexport interface RubricDimension<TRunOutput> {\n  /** Unique identifier — appears in finding subjects (`rubric:<id>`). */\n  id: string\n  /** 0..1 — weight in the composite. */\n  weight: number\n  /**\n   * Deterministic scorer: given the persona + run output, returns a\n   * 0..1 score. The substrate sums weight × score across dimensions\n   * for the deterministic composite; judges supplement subjective dims.\n   */\n  score: (input: { persona: unknown; output: TRunOutput }) => number\n  /** Optional human-readable label for reports. */\n  label?: string\n}\n\nexport interface JudgeConfig<TRunOutput> {\n  /** Judge identifier — appears in trace spans + manifest. */\n  id: string\n  /** Model snapshot to invoke. Pin the snapshot (`claude-sonnet-4-6@2025-04-15`); the validator rejects bare aliases. */\n  model: string\n  /** Dimensions this judge scores. */\n  dimensions: ReadonlyArray<string>\n  /**\n   * Optional rubric anchors — text examples the judge sees as a\n   * few-shot prompt to calibrate. STRONGLY recommended for subjective\n   * dimensions; required by the calibration gate (Pearson ≥0.7).\n   */\n  anchors?: ReadonlyArray<{ input: string; output: TRunOutput; expected: Record<string, number> }>\n}\n\nexport interface AgentRuntime<TPersona, TRunOutput> {\n  /**\n   * Invoke the agent against one persona. Returns BOTH:\n   *   - `events`: an `AsyncIterable<RuntimeStreamEvent>` the chat-centric\n   *     product consumes verbatim (SSE / WebSocket / inline render).\n   *     **Streaming is mandatory — never collapse this to a single Promise.**\n   *     The agent's existing `runChatTurn` (or equivalent async generator)\n   *     plugs in here directly.\n   *   - `output`: a `Promise<TRunOutput>` resolved AFTER the event stream\n   *     drains. The eval substrate awaits this for rubric scoring; chat\n   *     products usually ignore it (they already rendered incrementally).\n   *\n   * Implementation contract:\n   *   1. `act` MUST return immediately (synchronous construction of the\n   *      `events` iterator + the `output` promise).\n   *   2. Iterating `events` drives the underlying LLM/tool calls — the\n   *      caller chooses when to consume.\n   *   3. `output` resolves only after the iterator yields its terminal\n   *      event (typically `task_end`); see `collectAgentRun` helper.\n   *\n   * `ctx.emitter` is the substrate-threaded `TraceEmitter` — runtimes\n   * SHOULD record LLM/tool spans through it for capture integrity.\n   * `ctx.deadlineMs` is wall-clock; the runtime SHOULD honour for graceful\n   * cancel. `ctx.signal` is the standard abort signal.\n   */\n  act: (persona: TPersona, ctx: AgentRunContext) => AgentRunInvocation<TRunOutput>\n}\n\nexport interface AgentRunInvocation<TRunOutput> {\n  /** Live stream of typed runtime events. Consumed by chat UX directly. */\n  events: AsyncIterable<RuntimeStreamEvent>\n  /** Final structured output the rubric scores. Resolves after `events` drains. */\n  output: Promise<TRunOutput>\n}\n\n/**\n * Stub for agents whose `runtime.act` is not yet wired to the substrate's\n * eval path. Preserves the streaming contract (empty event stream + a\n * rejected `output` promise that tells the caller exactly what to fix).\n *\n * Per-vertical manifests usually start with this stub and replace it with\n * the agent's real streaming runtime (`runChatTurn` or equivalent) once\n * the eval path consumes the manifest end-to-end.\n */\nexport function unimplementedAgentRun<TRunOutput = unknown>(\n  reason = 'AgentRuntime.act is not yet wired for this manifest',\n): AgentRunInvocation<TRunOutput> {\n  return {\n    events: (async function* empty(): AsyncIterable<RuntimeStreamEvent> {})(),\n    output: Promise.reject(new Error(reason)),\n  }\n}\n\n/**\n * Drain `act`'s `events` into an array AND await its `output`. Useful for\n * eval / outcome-measurement code paths that don't care about live\n * rendering. The events array is preserved so the substrate can inspect\n * tool calls / readiness / questions retrospectively.\n *\n * IMPORTANT: chat-centric UX MUST NOT call this — it defeats streaming\n * (no incremental render). Use `for await (const ev of invocation.events)`\n * directly in the chat surface.\n */\nexport async function collectAgentRun<TRunOutput>(\n  invocation: AgentRunInvocation<TRunOutput>,\n): Promise<{ events: ReadonlyArray<RuntimeStreamEvent>; output: TRunOutput }> {\n  const events: RuntimeStreamEvent[] = []\n  for await (const ev of invocation.events) events.push(ev)\n  const output = await invocation.output\n  return { events, output }\n}\n\nexport interface AgentRunContext {\n  /** Substrate-managed trace emitter. */\n  emitter: import('@tangle-network/agent-eval').TraceEmitter\n  /** Stable run id for this persona × variant cell. */\n  runId: string\n  /** Variant the runtime is exercising (e.g. `'baseline'`, `'source-grounded'`). */\n  variantId?: string\n  /** Wall-clock deadline (epoch ms). The runtime SHOULD honour for graceful cancel. */\n  deadlineMs?: number\n  /** Optional abort signal. */\n  signal?: AbortSignal\n}\n\nexport interface AnalystConfig {\n  /** Model the analyst kinds use. Override per-kind via `analystKinds[i].cost.models`. */\n  model: string\n  /** Optional total budget across all kinds for one run. Substrate enforces via `BudgetGuard`. */\n  budgetUsd?: number\n  /** Backend hint for the AxAIService factory — same shape every kind uses. */\n  backend?: {\n    name?: 'openai' | 'router'\n    apiKey?: string\n    baseUrl?: string\n  }\n}\n\nexport interface AutoApplyPolicy {\n  knowledge?: {\n    enabled: boolean\n    confidenceThreshold?: number\n    mode?: 'write' | 'open-pr'\n  }\n  improvement?: {\n    enabled: boolean\n    confidenceThreshold?: number\n    mode?: 'write' | 'open-pr'\n  }\n}\n\n// ── factory + validation ─────────────────────────────────────────────\n\nexport class AgentManifestError extends Error {\n  constructor(\n    message: string,\n    public readonly agentId: string,\n    public readonly issues: ReadonlyArray<unknown> = [],\n  ) {\n    super(message)\n    this.name = 'AgentManifestError'\n  }\n}\n\n/**\n * Construct a validated agent manifest. Throws `AgentManifestError`\n * if any required surface is missing on disk.\n *\n * Generics: pass your persona / output types if you want narrowed\n * `runtime.act` signatures:\n *   `defineAgent<TaxPersona, TaxRunOutput>({ ... })`\n *\n * Most callers don't need the generics — the substrate operates on\n * `unknown` payloads internally and the manifest's `score` /\n * `runtime.act` see the typed shapes via TypeScript inference at\n * the call site.\n */\nexport function defineAgent<TPersona = unknown, TRunOutput = unknown>(\n  manifest: AgentManifest<TPersona, TRunOutput>,\n): AgentManifest<TPersona, TRunOutput> {\n  if (!manifest.id || manifest.id.trim().length === 0) {\n    throw new AgentManifestError('defineAgent: `id` is required', manifest.id ?? '')\n  }\n  if (!manifest.repoRoot || manifest.repoRoot.trim().length === 0) {\n    throw new AgentManifestError('defineAgent: `repoRoot` is required', manifest.id)\n  }\n  const issues = validateSurfaces(manifest.surfaces, manifest.repoRoot)\n  if (issues.length > 0) {\n    throw new AgentManifestError(\n      renderSurfaceIssues(issues, manifest.repoRoot),\n      manifest.id,\n      issues,\n    )\n  }\n  // Lightweight rubric sanity: weights sum to ~1.0 (no hard requirement —\n  // the substrate normalizes — but flag wildly miscalibrated weights).\n  const total = manifest.rubric.dimensions.reduce((acc, d) => acc + d.weight, 0)\n  if (manifest.rubric.dimensions.length > 0 && (total < 0.5 || total > 1.5)) {\n    throw new AgentManifestError(\n      `defineAgent(${manifest.id}): rubric dimension weights sum to ${total.toFixed(3)} — should be ~1.0`,\n      manifest.id,\n    )\n  }\n  return manifest\n}\n","/**\n * Substrate-default `ImprovementAdapter` — surfaces-driven, LLM-drafted\n * patches, optional auto-apply or PR-open.\n *\n * This is the one ImprovementAdapter every vertical agent uses. The\n * substrate parses each finding's `subject` via\n * `parseFindingSubject` (agent-eval), resolves it to a real file path\n * via the agent's `AgentSurfaces`, reads the current content, and asks\n * an LLM to draft a unified-diff patch given the finding + current\n * content + per-kind editing-discipline rules.\n *\n * Auto-apply gates on the source-finding's confidence and the\n * autoApply.improvement policy. Two modes:\n *   `write` — apply the patch in-place via `git apply -p0`. Operator\n *     reviews via `git diff`.\n *   `open-pr` — write to a branch, commit, push, open a PR via `gh`.\n *     Operator reviews via the PR UI.\n *\n * Fail-loud rules:\n *   - Findings whose subject doesn't parse → counted in `errors`.\n *   - Findings whose subject targets an undeclared surface → counted in\n *     `errors` with the offending kind in the message.\n *   - Findings whose target path doesn't exist AND the kind isn't a\n *     create-new variant (`new-tool`, `knowledge.wiki`) → counted in\n *     `errors` with the resolved path in the message.\n *   - LLM drafts that fail JSON-schema validation → counted in\n *     `errors` with the schema issue.\n *\n * No silent skips. Every dropped finding has a recorded reason the\n * loop's report surfaces.\n */\n\nimport { spawnSync } from 'node:child_process'\nimport { readFileSync } from 'node:fs'\nimport {\n  type AnalystFinding,\n  type FindingSubject,\n  parseFindingSubject,\n} from '@tangle-network/agent-eval'\nimport type { ImprovementAdapter } from '../analyst-loop/types'\nimport type { AgentSurfaces, ResolvedSurface } from './surfaces'\nimport { resolveSubjectPath } from './surfaces'\n\n// ── proposal shape ───────────────────────────────────────────────────\n\nexport interface SurfaceImprovementEdit {\n  /** Stable id derived from the source finding so re-proposals are idempotent. */\n  id: string\n  /** The finding that produced this edit — for revert + audit trail. */\n  sourceFindingId: string\n  /** Parsed subject; included so the apply step doesn't re-parse. */\n  subject: FindingSubject\n  /** Resolved on-disk target. */\n  target: ResolvedSurface\n  /** SHA-256 of the current file content the patch was drafted against. */\n  baseSha256: string\n  /** Unified-diff patch the LLM drafted (relative to `target.absolutePath`). */\n  patch: string\n  /** One-line summary the operator sees in the report / PR title. */\n  summary: string\n  /** Multi-line rationale for the PR body — finding context + LLM reasoning. */\n  rationale: string\n  /** Carry-forward from the finding so the apply gate can check the threshold. */\n  confidence: number\n  /** Carry-forward severity for prioritization. */\n  severity: AnalystFinding['severity']\n}\n\nexport interface CreateSurfaceImprovementAdapterOpts {\n  surfaces: AgentSurfaces\n  repoRoot: string\n  /**\n   * LLM-draft callback. Given a finding + current file content + the\n   * resolved target, returns a unified-diff patch + summary + rationale.\n   *\n   * Required — the substrate doesn't ship a hardcoded prompt; the agent\n   * author picks the model (Haiku for cheap routine drafts, Sonnet for\n   * substantive prompt rewrites, etc.) via this callback.\n   */\n  draftPatch: (input: DraftPatchInput) => Promise<DraftPatchOutput>\n  /**\n   * Apply mode:\n   *   `write` — `git apply` in-place; operator reviews via `git diff`\n   *   `open-pr` — branch + commit + push + `gh pr create`\n   *   `none` — never apply; collect proposals for the report only\n   *\n   * The `apply` method honours this even when the loop calls it; the\n   * effective behaviour is also gated on the per-finding confidence\n   * threshold via `runAnalystLoop`'s `autoApply` policy.\n   */\n  mode?: 'write' | 'open-pr' | 'none'\n  /** When `mode === 'open-pr'`, the base branch new PRs target. Default: `main`. */\n  baseBranch?: string\n  /** Required for `mode === 'open-pr'` — the GH owner/repo (`tangle-network/tax-agent`). */\n  ghRepo?: string\n  /**\n   * When the resolved target doesn't exist, allow the substrate to\n   * CREATE the file (for `knowledge.wiki`, `new-tool` subjects). Default\n   * true for those kinds, false for `system-prompt` / `rubric` / etc.\n   * (named sections that don't exist are a contract violation, not a\n   * scaffolding opportunity).\n   */\n  allowCreateForKinds?: ReadonlyArray<FindingSubject['kind']>\n}\n\nexport interface DraftPatchInput {\n  finding: AnalystFinding\n  subject: FindingSubject\n  target: ResolvedSurface\n  /** Current file content (empty string when `intent === 'create-new'`). */\n  currentContent: string\n}\n\nexport interface DraftPatchOutput {\n  /** Unified diff against the current file content. Empty string skips this finding. */\n  patch: string\n  /** One-line summary for the operator. */\n  summary: string\n  /** Multi-line rationale for the PR body. */\n  rationale: string\n}\n\n// ── factory ──────────────────────────────────────────────────────────\n\nconst DEFAULT_CREATE_KINDS: ReadonlyArray<FindingSubject['kind']> = [\n  'knowledge.wiki',\n  'knowledge.claim',\n  'knowledge.raw',\n  'new-tool',\n]\n\nexport function createSurfaceImprovementAdapter(\n  opts: CreateSurfaceImprovementAdapterOpts,\n): ImprovementAdapter<SurfaceImprovementEdit> {\n  const mode = opts.mode ?? 'none'\n  const allowCreate = opts.allowCreateForKinds ?? DEFAULT_CREATE_KINDS\n\n  return {\n    async proposeFromFindings(findings) {\n      const edits: SurfaceImprovementEdit[] = []\n      const errors: Array<{ findingId: string; subject: string; message: string }> = []\n      let skipped = 0\n\n      for (const f of findings) {\n        const subject = parseFindingSubject(f.subject)\n        if (subject === null) {\n          if (f.subject !== undefined) {\n            errors.push({\n              findingId: f.finding_id,\n              subject: f.subject,\n              message: 'subject does not parse against the finding-subject grammar',\n            })\n          } else {\n            // Subject-less findings are descriptive, not actionable —\n            // legitimate; count in `skipped` not `errors`.\n            skipped += 1\n          }\n          continue\n        }\n\n        // `cluster` findings (failure-mode) are evidence, not mutations.\n        if (subject.kind === 'cluster') {\n          skipped += 1\n          continue\n        }\n\n        // `agent-knowledge:*` findings flow to the KnowledgeAdapter;\n        // the ImprovementAdapter skips them so subjects don't double-route.\n        if (subject.kind.startsWith('knowledge.')) {\n          skipped += 1\n          continue\n        }\n\n        const target = resolveSubjectPath(subject, opts.surfaces, opts.repoRoot)\n        if (target === null) {\n          errors.push({\n            findingId: f.finding_id,\n            subject: f.subject ?? '',\n            message: `subject kind \"${subject.kind}\" targets an undeclared surface; declare it in AgentSurfaces or stop emitting this subject`,\n          })\n          continue\n        }\n\n        if (target.intent === 'create-new' && !allowCreate.includes(subject.kind)) {\n          errors.push({\n            findingId: f.finding_id,\n            subject: f.subject ?? '',\n            message: `target ${target.repoRelativePath} does not exist; the kind \"${subject.kind}\" requires an existing target (analyst named a section that isn't in the codebase)`,\n          })\n          continue\n        }\n\n        const currentContent = target.exists ? readFileSync(target.absolutePath, 'utf-8') : ''\n\n        let draft: DraftPatchOutput\n        try {\n          draft = await opts.draftPatch({ finding: f, subject, target, currentContent })\n        } catch (err) {\n          errors.push({\n            findingId: f.finding_id,\n            subject: f.subject ?? '',\n            message: `draftPatch threw: ${err instanceof Error ? err.message : String(err)}`,\n          })\n          continue\n        }\n\n        if (draft.patch.trim().length === 0) {\n          skipped += 1\n          continue\n        }\n\n        edits.push({\n          id: `imp-${f.finding_id}`,\n          sourceFindingId: f.finding_id,\n          subject,\n          target,\n          baseSha256: sha256(currentContent),\n          patch: draft.patch,\n          summary: draft.summary,\n          rationale: draft.rationale,\n          confidence: f.confidence,\n          severity: f.severity,\n        })\n      }\n\n      return { edits, skipped, errors }\n    },\n\n    async apply(edits) {\n      const applied: string[] = []\n      const warnings: string[] = []\n\n      if (mode === 'none') {\n        warnings.push(\n          'createSurfaceImprovementAdapter: mode=none; no edits applied — adjust manifest.autoApply.improvement.mode',\n        )\n        return { applied, warnings }\n      }\n\n      if (mode === 'open-pr' && !opts.ghRepo) {\n        warnings.push(\n          'createSurfaceImprovementAdapter: mode=open-pr requires `ghRepo`; falling back to no-op',\n        )\n        return { applied, warnings }\n      }\n\n      for (const edit of edits) {\n        // Race-detection: confirm the file content hasn't moved since the\n        // patch was drafted. A diff applied against drifted content is a\n        // recipe for silent corruption.\n        const current = edit.target.exists ? readFileSync(edit.target.absolutePath, 'utf-8') : ''\n        if (sha256(current) !== edit.baseSha256) {\n          warnings.push(\n            `${edit.target.repoRelativePath}: base SHA mismatch; file changed after draft. Skipping.`,\n          )\n          continue\n        }\n\n        const ok = applyPatchInPlace(edit, opts.repoRoot)\n        if (!ok) {\n          warnings.push(`${edit.target.repoRelativePath}: git apply failed`)\n          continue\n        }\n        applied.push(edit.target.repoRelativePath)\n      }\n\n      if (mode === 'open-pr' && applied.length > 0 && opts.ghRepo) {\n        const prUrl = openPullRequest(\n          applied,\n          edits.filter((e) => applied.includes(e.target.repoRelativePath)),\n          opts.repoRoot,\n          opts.ghRepo,\n          opts.baseBranch ?? 'main',\n        )\n        if (prUrl) warnings.push(`opened PR: ${prUrl}`)\n        else warnings.push('PR creation failed; edits are committed to a local branch only')\n      }\n\n      return { applied, warnings }\n    },\n  }\n}\n\n// ── apply helpers ────────────────────────────────────────────────────\n\nfunction applyPatchInPlace(edit: SurfaceImprovementEdit, repoRoot: string): boolean {\n  const result = spawnSync('git', ['apply', '--whitespace=fix', '-p0', '-'], {\n    cwd: repoRoot,\n    input: edit.patch,\n    encoding: 'utf-8',\n  })\n  return result.status === 0\n}\n\nfunction openPullRequest(\n  paths: ReadonlyArray<string>,\n  edits: ReadonlyArray<SurfaceImprovementEdit>,\n  repoRoot: string,\n  ghRepo: string,\n  baseBranch: string,\n): string | null {\n  const branch = `analyst-loop/${Date.now()}-${edits[0]?.sourceFindingId.slice(0, 12) ?? 'edits'}`\n  // Create branch, stage, commit\n  const checkout = spawnSync('git', ['checkout', '-b', branch], { cwd: repoRoot })\n  if (checkout.status !== 0) return null\n  const add = spawnSync('git', ['add', ...paths], { cwd: repoRoot })\n  if (add.status !== 0) return null\n  const title = `analyst-loop: ${edits[0]?.summary ?? `${edits.length} improvement edits`}`\n  const body = [\n    `Automated analyst-loop edits — review carefully before merge.`,\n    '',\n    `Source findings:`,\n    ...edits.map(\n      (e) =>\n        `  - ${e.sourceFindingId} (confidence ${e.confidence.toFixed(2)}, severity ${e.severity})`,\n    ),\n    '',\n    'Rationales:',\n    ...edits.map((e) => `\\n## ${e.target.repoRelativePath}\\n\\n${e.rationale}`),\n  ].join('\\n')\n  const commit = spawnSync('git', ['commit', '-m', title, '-m', body], { cwd: repoRoot })\n  if (commit.status !== 0) return null\n  const push = spawnSync('git', ['push', '-u', 'origin', branch], { cwd: repoRoot })\n  if (push.status !== 0) return null\n  const pr = spawnSync(\n    'gh',\n    [\n      'pr',\n      'create',\n      '--repo',\n      ghRepo,\n      '--title',\n      title,\n      '--body',\n      body,\n      '--base',\n      baseBranch,\n      '--head',\n      branch,\n    ],\n    { cwd: repoRoot, encoding: 'utf-8' },\n  )\n  if (pr.status !== 0) return null\n  return pr.stdout.trim()\n}\n\nfunction sha256(s: string): string {\n  // node:crypto is dynamic-imported lazily so the adapter can be tested in\n  // environments without crypto (browser tests, mocked envs).\n  const crypto = require('node:crypto') as typeof import('node:crypto')\n  return crypto.createHash('sha256').update(s, 'utf-8').digest('hex')\n}\n","/**\n * Substrate-default `KnowledgeAdapter` — wraps agent-knowledge's\n * `proposeFromFindings` + `applyKnowledgeWriteBlocks` with substrate\n * defaults (auto-lint after apply, source linkage via finding id).\n *\n * Every agent that ships a `.agent-knowledge/` tree uses this adapter\n * unmodified. Per-agent customization happens at the manifest level\n * (`autoApply.knowledge.confidenceThreshold`, etc.), not by writing a\n * new adapter.\n *\n * Lint discipline: after each apply we run agent-knowledge's\n * `lintKnowledgeIndex` to catch broken links / circular claims /\n * duplicate pages introduced by the new writes. Findings that fail the\n * post-apply lint are recorded in `warnings`; the apply itself is not\n * rolled back (lint failures are soft — humans review the wiki state).\n */\n\nimport type { AnalystFinding } from '@tangle-network/agent-eval'\nimport type { KnowledgeAdapter } from '../analyst-loop/types'\n\nexport interface CreateSurfaceKnowledgeAdapterOpts {\n  /** `.agent-knowledge/` root (absolute path the substrate writes blocks against). */\n  knowledgeRoot: string\n}\n\n/**\n * Build the adapter. We accept the agent-knowledge functions as DI so\n * the substrate stays decoupled from a specific agent-knowledge\n * version — the agent author imports them in their manifest module\n * and hands them to the factory.\n *\n * `proposeFromFindings(findings)` returns\n *   `{ proposals: KnowledgeProposal[]; skipped: number; errors: ... }`.\n *\n * `applyKnowledgeWriteBlocks(root, content)` returns\n *   `{ written: string[]; warnings: string[] }`.\n *\n * `lintKnowledgeIndex(index)` (optional) returns `KnowledgeLintFinding[]`.\n */\nexport interface KnowledgeAdapterDeps<TProposal> {\n  proposeFromFindings: (findings: ReadonlyArray<AnalystFinding>) => {\n    proposals: TProposal[]\n    skipped: number\n    errors: Array<{ findingId: string; subject: string; message: string }>\n  }\n  applyKnowledgeWriteBlocks: (\n    root: string,\n    proposalText: string,\n  ) => Promise<{ written: string[]; warnings: string[] }>\n  /**\n   * Optional post-apply lint hook. The substrate runs it after each\n   * batch of writes; failures land in `warnings` (the apply is not\n   * rolled back — lint signals drift to review, not block).\n   */\n  lintAfterApply?: (root: string) => Promise<ReadonlyArray<string>>\n}\n\nexport function createSurfaceKnowledgeAdapter<TProposal>(\n  opts: CreateSurfaceKnowledgeAdapterOpts,\n  deps: KnowledgeAdapterDeps<TProposal>,\n): KnowledgeAdapter<TProposal> {\n  return {\n    proposeFromFindings(findings) {\n      const batch = deps.proposeFromFindings(findings)\n      return {\n        proposals: batch.proposals,\n        skipped: batch.skipped,\n        errors: batch.errors,\n      }\n    },\n    async apply(proposals) {\n      const written: string[] = []\n      const warnings: string[] = []\n      for (const p of proposals) {\n        const proposalText = renderProposalAsWriteBlock(p)\n        if (proposalText === null) {\n          warnings.push(\n            `proposal has no writeBlocks/content; skipping (sourceFindingId=${getSourceFindingId(p)})`,\n          )\n          continue\n        }\n        try {\n          const r = await deps.applyKnowledgeWriteBlocks(opts.knowledgeRoot, proposalText)\n          written.push(...r.written)\n          warnings.push(...r.warnings)\n        } catch (err) {\n          warnings.push(\n            `applyKnowledgeWriteBlocks failed: ${err instanceof Error ? err.message : String(err)}`,\n          )\n        }\n      }\n      if (deps.lintAfterApply && written.length > 0) {\n        try {\n          const lintIssues = await deps.lintAfterApply(opts.knowledgeRoot)\n          for (const issue of lintIssues) warnings.push(`lint: ${issue}`)\n        } catch (err) {\n          warnings.push(\n            `lintAfterApply failed: ${err instanceof Error ? err.message : String(err)}`,\n          )\n        }\n      }\n      return { written, warnings }\n    },\n  }\n}\n\n/**\n * Pluck the canonical write-block text from a proposal regardless of\n * which exact agent-knowledge version produced it. We accept either:\n *   - `{ writeBlocks: Array<{ path, content }> }` — the typed shape\n *     1.3.0+ emits\n *   - `{ proposalText: string }` — legacy single-block shape\n *   - `{ content: string }` — minimal raw form\n *\n * Returns `null` when nothing parseable is present (warned upstream).\n */\nfunction renderProposalAsWriteBlock(p: unknown): string | null {\n  if (!p || typeof p !== 'object') return null\n  const obj = p as Record<string, unknown>\n  if (Array.isArray(obj.writeBlocks)) {\n    const blocks = obj.writeBlocks as Array<{ path?: string; content?: string }>\n    if (blocks.length === 0) return null\n    return blocks\n      .map((b) => (typeof b.content === 'string' ? b.content : ''))\n      .filter((s) => s.length > 0)\n      .join('\\n\\n')\n  }\n  if (typeof obj.proposalText === 'string') return obj.proposalText\n  if (typeof obj.content === 'string') return obj.content\n  return null\n}\n\nfunction getSourceFindingId(p: unknown): string {\n  if (!p || typeof p !== 'object') return '<unknown>'\n  const obj = p as Record<string, unknown>\n  if (typeof obj.sourceFindingId === 'string') return obj.sourceFindingId\n  if (typeof obj.id === 'string') return obj.id\n  return '<unknown>'\n}\n","/**\n * `OutcomeMeasurement` — the missing metric that turns the analyst\n * loop from \"observability\" into \"self-improvement\".\n *\n * Without this hook, the loop reports process counts (`findings: 42`,\n * `applied: 7`) and never proves the applied edits actually improved\n * anything. With this hook, the substrate re-runs the cohort against\n * the same personas after each apply pass and reports a composite\n * score delta. A negative delta is the substrate's strongest signal\n * to either roll back or surface for review.\n *\n * Wiring is intentionally simple: pass the manifest + the `runAgentEval`\n * function and a list of `personaIds` to re-run. The wrapper:\n *   1. Captures the baseline composite from the just-finished run.\n *   2. After `runAnalystLoop` returns, re-invokes `runAgentEval` against\n *      the same persona slice.\n *   3. Computes the delta and appends to `loop-report.json`.\n *   4. If `rollbackOnRegression` and delta < 0, reverts applied edits.\n */\n\nimport type { RunAnalystLoopResult } from '../analyst-loop/types'\n\nexport interface OutcomeMeasurement {\n  /** Baseline composite before applies — captured from the most-recent eval run. */\n  baselineComposite: number\n  /** Composite after re-running the cohort with applied edits. */\n  afterComposite: number\n  /** `afterComposite - baselineComposite`. Positive = the loop improved the agent. */\n  delta: number\n  /** Per-persona deltas for finer-grained review. */\n  perPersona: ReadonlyArray<{ personaId: string; before: number; after: number; delta: number }>\n  /** When the substrate rolled back applies due to regression, the paths reverted. */\n  rolledBackPaths: ReadonlyArray<string>\n}\n\nexport interface OutcomeMeasurementOpts {\n  /** Composite scores from the run that produced the findings. */\n  baseline: ReadonlyArray<{ personaId: string; composite: number }>\n  /**\n   * Re-run callback — the substrate invokes this after applies. The\n   * agent author provides their `runAgentEval`-equivalent so the\n   * substrate can ask \"score this persona slice now.\"\n   *\n   * The callback SHOULD reuse the same cohort + judges + variant as\n   * the baseline run; only the agent's mutable surfaces have changed.\n   */\n  reRunCohort: (\n    personaIds: ReadonlyArray<string>,\n  ) => Promise<ReadonlyArray<{ personaId: string; composite: number }>>\n  /** When `true`, applied edits are reverted on negative delta. Default `false`. */\n  rollbackOnRegression?: boolean\n  /** Callback to revert a list of paths (typically `git checkout HEAD --`). */\n  revert?: (paths: ReadonlyArray<string>) => Promise<void>\n}\n\n/**\n * Run `runAnalystLoop` and stamp an `OutcomeMeasurement` onto the\n * result. The substrate calls this after each canonical eval; the\n * delta lands in `loop-report.json` for cross-run trend analysis.\n *\n * The function returns the original `RunAnalystLoopResult` enriched\n * with `outcome` so callers stay backwards-compatible (the field is\n * optional on the type; missing means no measurement was wired).\n */\nexport async function measureOutcome<TProposal, TEdit>(\n  result: RunAnalystLoopResult<TProposal, TEdit>,\n  opts: OutcomeMeasurementOpts,\n): Promise<RunAnalystLoopResult<TProposal, TEdit> & { outcome: OutcomeMeasurement }> {\n  const applied = result.knowledge?.applied ?? []\n  const improvementsApplied = result.improvement?.applied ?? []\n  const allApplied = [...applied, ...improvementsApplied]\n\n  // No applies → no outcome to measure. Return a zero-delta to keep the\n  // shape stable for consumers; baseline / after equal.\n  if (allApplied.length === 0) {\n    return {\n      ...result,\n      outcome: {\n        baselineComposite: meanComposite(opts.baseline),\n        afterComposite: meanComposite(opts.baseline),\n        delta: 0,\n        perPersona: opts.baseline.map((b) => ({\n          personaId: b.personaId,\n          before: b.composite,\n          after: b.composite,\n          delta: 0,\n        })),\n        rolledBackPaths: [],\n      },\n    }\n  }\n\n  const personaIds = opts.baseline.map((b) => b.personaId)\n  const after = await opts.reRunCohort(personaIds)\n  const afterByPersona = new Map(after.map((r) => [r.personaId, r.composite]))\n\n  const perPersona = opts.baseline.map((b) => {\n    const a = afterByPersona.get(b.personaId) ?? b.composite\n    return { personaId: b.personaId, before: b.composite, after: a, delta: a - b.composite }\n  })\n  const baselineComposite = meanComposite(opts.baseline)\n  const afterComposite = meanComposite(after)\n  const delta = afterComposite - baselineComposite\n\n  let rolledBackPaths: string[] = []\n  if (delta < 0 && opts.rollbackOnRegression && opts.revert) {\n    await opts.revert(allApplied)\n    rolledBackPaths = [...allApplied]\n  }\n\n  return {\n    ...result,\n    outcome: {\n      baselineComposite,\n      afterComposite,\n      delta,\n      perPersona,\n      rolledBackPaths,\n    },\n  }\n}\n\nfunction meanComposite(rows: ReadonlyArray<{ composite: number }>): number {\n  if (rows.length === 0) return 0\n  return rows.reduce((acc, r) => acc + r.composite, 0) / 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