@sudosandwich/limps 2.8.0 → 2.9.0

package/README.md

@@ -6,9 +6,36 @@
 [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
 ![Tests](https://img.shields.io/badge/Tests-899%20passing-brightgreen)
 ![Coverage](https://img.shields.io/badge/Coverage-%3E70%25-brightgreen)
+[![MCP Badge](https://lobehub.com/badge/mcp/paulbreuler-limps)](https://lobehub.com/mcp/paulbreuler-limps)
 
 ![limps in action](https://github.com/paulbreuler/limps/blob/main/.github/assets/limps-a-lol-longer.gif?raw=true)
 
+## Table of Contents
+
+- [Quick Start](#quick-start)
+- [Features](#features)
+- [How I Use limps](#how-i-use-limps)
+- [How You Can Use It](#how-you-can-use-it)
+- [Why limps?](#why-limps)
+- [Installation](#installation)
+- [Project Setup](#project-setup)
+- [Client Setup](#client-setup)
+- [Transport](#transport)
+- [CLI Commands](#cli-commands)
+- [Configuration](#configuration)
+- [Environment Variables](#environment-variables)
+- [MCP Tools](#mcp-tools)
+- [Skills](#skills)
+- [Extensions](#extensions)
+- [Obsidian Compatibility](#obsidian-compatibility)
+- [Development](#development)
+- [Used in Production](#used-in-production)
+- [Creating a feature plan](#creating-a-feature-plan)
+- [Deep Dive](#deep-dive)
+- [Instructions](#instructions)
+- [What is MCP?](#what-is-mcp)
+- [License](#license)
+
 ## Quick Start
 
 ```bash
@@ -25,6 +52,15 @@ limps config sync-mcp --client claude-code
 
 Run this in the folder where you want to keep the docs and that's it. Your AI assistant now has access to your documents and nothing else. The folder can be anywhere—local, synced, or in a repo; limps does not require a git repository or a `plans/` directory.
 
+## Features
+
+- **Document CRUD + full-text search** across any folder of Markdown files
+- **Plan + agent workflows** with status tracking and task scoring
+- **Next-task suggestions** with score breakdowns and bias tuning
+- **Sandboxed document processing** via `process_doc(s)` helpers
+- **Multi-client sync** for Cursor, Claude, Codex, and more
+- **Extensions** for domain-specific tooling (e.g., limps-headless)
+
 ### What to know before you start
 
 - **Local only** — Your data stays on disk (SQLite index + your files). No cloud, no subscription.
@@ -199,6 +235,24 @@ Add to `~/Library/Application Support/Claude/claude_desktop_config.json`:
 
 </details>
 
+<details>
+<summary><b>Windows (npx)</b></summary>
+
+On Windows, use `cmd /c` to run `npx`:
+
+```json
+{
+  "mcpServers": {
+    "limps": {
+      "command": "cmd",
+      "args": ["/c", "npx", "-y", "@sudosandwich/limps", "serve", "--config", "C:\\path\\to\\config.json"]
+    }
+  }
+}
+```
+
+</details>
+
 <details>
 <summary><b>OpenAI Codex</b></summary>
 
@@ -230,6 +284,12 @@ limps config sync-mcp --client chatgpt --print
 
 </details>
 
+## Transport
+
+- **Current**: stdio (local MCP server, launched by your client).
+- **Remote clients**: Use an MCP-compatible proxy for HTTPS clients (e.g., ChatGPT).
+- **Roadmap**: SSE/HTTP transports are planned but not implemented yet.
+
 ## CLI Commands
 
 ### Viewing Plans
@@ -271,6 +331,9 @@ Config location varies by OS:
   "fileExtensions": [".md"],
   "dataPath": "~/Library/Application Support/limps/data",
   "extensions": ["@sudosandwich/limps-headless"],
+  "tools": {
+    "allowlist": ["list_docs", "search_docs"]
+  },
   "scoring": {
     "weights": { "dependency": 40, "priority": 30, "workload": 30 },
     "biases": {}
@@ -284,9 +347,20 @@ Config location varies by OS:
 | `docsPaths` | Additional directories to index |
 | `fileExtensions` | File types to index (default: `.md`) |
 | `dataPath` | SQLite database location |
+| `tools` | Tool allowlist/denylist filtering |
 | `extensions` | Extension packages to load |
 | `scoring` | Task prioritization weights and biases |
 
+## Environment Variables
+
+| Variable | Description | Example |
+|---|---|---|
+| `LIMPS_PROJECT` | Select active project for CLI commands | `LIMPS_PROJECT=project-b limps list-plans` |
+| `LIMPS_ALLOWED_TOOLS` | Comma-separated allowlist; only these tools are registered | `LIMPS_ALLOWED_TOOLS="list_docs,search_docs"` |
+| `LIMPS_DISABLED_TOOLS` | Comma-separated denylist; tools to hide | `LIMPS_DISABLED_TOOLS="process_doc,process_docs"` |
+
+**Precedence:** `config.tools` overrides env vars. If allowlist is set, denylist is ignored.
+
 ## MCP Tools
 
 limps exposes 15 MCP tools for AI assistants:
@@ -297,6 +371,18 @@ limps exposes 15 MCP tools for AI assistants:
 | **Plans** | `create_plan`, `list_plans`, `list_agents`, `get_plan_status` |
 | **Tasks** | `get_next_task`, `update_task_status` |
 
+## Skills
+
+This repo includes a limps planning skill for AI IDEs in `skills/limps-planning`.
+
+Install from GitHub:
+
+```bash
+npx skills add paulbreuler/limps/skills/limps-planning
+```
+
+The skill focuses on selecting the right limps tools for common planning workflows.
+
 ## Extensions
 
 Extensions add MCP tools and resources. Install from npm:

package/dist/agent-parser.d.ts

@@ -6,6 +6,7 @@
  *
  * Task ID Format: `<plan-folder>#<agent-number>` (e.g., "0022-datagrid-stories#000")
  */
+import type { ScoringWeights } from './config.js';
 /**
  * Agent file frontmatter interface.
  * This is the authoritative source of truth for agent/task state.
@@ -25,6 +26,11 @@ export interface AgentFrontmatter {
     aliases?: string[];
     created?: string;
     updated?: string;
+    scoring?: {
+        bias?: number;
+        weights?: Partial<ScoringWeights>;
+    };
+    depends_on?: string[] | string;
 }
 /**
  * Parsed agent file with frontmatter and metadata.

package/dist/agent-parser.d.ts.map

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package/dist/agent-parser.js

@@ -18,6 +18,31 @@ const DEFAULT_FRONTMATTER = {
     blocks: [],
     files: [],
 };
+function normalizeDependencyValue(value) {
+    if (typeof value === 'number' && Number.isFinite(value)) {
+        return String(value).padStart(3, '0');
+    }
+    if (typeof value === 'string') {
+        const trimmed = value.trim();
+        if (trimmed.length === 0) {
+            return null;
+        }
+        if (/^\d+$/.test(trimmed)) {
+            return trimmed.padStart(3, '0');
+        }
+        return trimmed;
+    }
+    return null;
+}
+function normalizeDependencies(value) {
+    if (Array.isArray(value)) {
+        return value
+            .map((entry) => normalizeDependencyValue(entry))
+            .filter((entry) => Boolean(entry));
+    }
+    const single = normalizeDependencyValue(value);
+    return single ? [single] : [];
+}
 /**
  * Extract agent number from filename.
  *
@@ -256,6 +281,11 @@ export function parseAgentFile(path, content) {
             ...DEFAULT_FRONTMATTER,
             ...parsed.frontmatter,
         };
+        const rawFrontmatter = parsed.frontmatter;
+        const dependencyOverrides = normalizeDependencies(rawFrontmatter.depends_on);
+        const parsedDependencies = normalizeDependencies(rawFrontmatter.dependencies);
+        const mergedDependencies = Array.from(new Set([...parsedDependencies, ...dependencyOverrides]));
+        frontmatter.dependencies = mergedDependencies;
         body = parsed.body;
     }
     else {

package/dist/agent-parser.js.map

@@ -1 +1 @@
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package/dist/cli/config-cmd.d.ts

@@ -2,6 +2,7 @@
  * Config subcommand handlers for limps CLI.
  * Provides commands to manage the project registry and view configuration.
  */
+import { type ScoringPreset, type ScoringWeights, type ScoringBiases } from '../config.js';
 /**
  * Project data for JSON output.
  */
@@ -13,6 +14,10 @@ export interface ProjectsData {
         exists: boolean;
     }[];
     total: number;
+    usage: {
+        projectFlag: string;
+        configUse: string;
+    };
 }
 /**
  * Get projects data for JSON output.
@@ -63,6 +68,13 @@ export declare function getConfigData(resolveConfigPathFn: () => string): Config
  * @returns Formatted configuration
  */
 export declare function configShow(resolveConfigPathFn: () => string): string;
+export interface ScoringConfigUpdateOptions {
+    preset?: ScoringPreset;
+    weights?: Partial<ScoringWeights>;
+    biases?: Partial<ScoringBiases>;
+}
+export declare function configScoringShow(resolveConfigPathFn: () => string): string;
+export declare function configScoringUpdate(resolveConfigPathFn: () => string, options: ScoringConfigUpdateOptions): string;
 /**
  * Print the resolved config file path.
  *

package/dist/cli/config-cmd.d.ts.map

@@ -1 +1 @@
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package/dist/cli/config-cmd.js

@@ -7,7 +7,7 @@ import * as jsonpatch from 'fast-json-patch';
 import { resolve, dirname, basename, join, relative, sep } from 'path';
 import * as toml from '@iarna/toml';
 import { registerProject, unregisterProject, setCurrentProject, listProjects, loadRegistry, } from './registry.js';
-import { loadConfig, validateConfig } from '../config.js';
+import { loadConfig, validateConfig, getScoringWeights, getScoringBiases, SCORING_PRESETS, } from '../config.js';
 import { getOSBasePath } from '../utils/os-paths.js';
 /** Child dir under limps for project configs (limps/projects/<name>/config.json). */
 const PROJECTS_DIR = 'projects';
@@ -32,6 +32,10 @@ export function getProjectsData() {
             exists: existsSync(p.configPath),
         })),
         total: projects.length,
+        usage: {
+            projectFlag: 'limps <command> --project <name>',
+            configUse: 'limps config use <name>',
+        },
     };
 }
 /**
@@ -53,6 +57,11 @@ export function configList() {
         const exists = existsSync(project.configPath) ? '' : ' (missing)';
         lines.push(`   ${current}     ${name}  ${project.configPath}${exists}`);
     }
+    lines.push('');
+    lines.push('Use with CLI commands:');
+    lines.push('  limps <command> --project <name>');
+    lines.push('Set default project:');
+    lines.push('  limps config use <name>');
     return lines.join('\n');
 }
 /**
@@ -143,6 +152,10 @@ export function configShow(resolveConfigPathFn) {
     }
     if (config.scoring?.weights || config.scoring?.biases) {
         lines.push(`  scoring:`);
+        if (config.scoring.preset) {
+            lines.push(`    preset:`);
+            lines.push(`      ${config.scoring.preset}`);
+        }
         if (config.scoring.weights) {
             lines.push(`    weights:`);
             const weights = config.scoring.weights;
@@ -198,6 +211,135 @@ export function configShow(resolveConfigPathFn) {
     }
     return lines.join('\n');
 }
+export function configScoringShow(resolveConfigPathFn) {
+    const configPath = resolveConfigPathFn();
+    if (!existsSync(configPath)) {
+        return `Config file not found: ${configPath}\n\nRun \`limps init <name>\` to create a project.`;
+    }
+    const config = loadConfig(configPath);
+    const weights = getScoringWeights(config);
+    const biases = getScoringBiases(config);
+    const lines = [];
+    lines.push(`Config file: ${configPath}`);
+    lines.push('');
+    lines.push('Scoring:');
+    lines.push(`  preset: ${config.scoring.preset ?? 'default'}`);
+    lines.push('  weights:');
+    lines.push(`    dependency: ${weights.dependency}`);
+    lines.push(`    priority:   ${weights.priority}`);
+    lines.push(`    workload:   ${weights.workload}`);
+    const hasPlanBiases = biases.plans && Object.keys(biases.plans).length > 0;
+    const hasPersonaBiases = biases.personas && Object.values(biases.personas).length > 0;
+    const hasStatusBiases = biases.statuses && Object.values(biases.statuses).length > 0;
+    if (hasPlanBiases || hasPersonaBiases || hasStatusBiases) {
+        lines.push('  biases:');
+        if (hasPlanBiases && biases.plans) {
+            lines.push('    plans:');
+            for (const [plan, value] of Object.entries(biases.plans)) {
+                lines.push(`      ${plan}: ${value > 0 ? '+' : ''}${value}`);
+            }
+        }
+        if (hasPersonaBiases && biases.personas) {
+            lines.push('    personas:');
+            for (const [persona, value] of Object.entries(biases.personas)) {
+                lines.push(`      ${persona}: ${value > 0 ? '+' : ''}${value}`);
+            }
+        }
+        if (hasStatusBiases && biases.statuses) {
+            lines.push('    statuses:');
+            for (const [status, value] of Object.entries(biases.statuses)) {
+                lines.push(`      ${status}: ${value > 0 ? '+' : ''}${value}`);
+            }
+        }
+    }
+    return lines.join('\n');
+}
+export function configScoringUpdate(resolveConfigPathFn, options) {
+    const configPath = resolveConfigPathFn();
+    if (!existsSync(configPath)) {
+        throw new Error(`Config file not found: ${configPath}`);
+    }
+    const content = readFileSync(configPath, 'utf-8');
+    const config = JSON.parse(content);
+    const typedConfig = config;
+    if (!typedConfig.scoring || typeof typedConfig.scoring !== 'object') {
+        typedConfig.scoring = { weights: {}, biases: {} };
+    }
+    if (!typedConfig.scoring.weights || typeof typedConfig.scoring.weights !== 'object') {
+        typedConfig.scoring.weights = {};
+    }
+    if (!typedConfig.scoring.biases || typeof typedConfig.scoring.biases !== 'object') {
+        typedConfig.scoring.biases = {};
+    }
+    const changes = [];
+    if (options.preset) {
+        if (!SCORING_PRESETS[options.preset]) {
+            throw new Error(`Unknown preset: ${options.preset}. Valid presets: ${Object.keys(SCORING_PRESETS).join(', ')}`);
+        }
+        typedConfig.scoring.preset = options.preset;
+        changes.push(`  preset: ${options.preset}`);
+        if (!options.weights) {
+            typedConfig.scoring.weights = {};
+        }
+        if (!options.biases) {
+            typedConfig.scoring.biases = {};
+        }
+    }
+    if (options.weights && Object.keys(options.weights).length > 0) {
+        typedConfig.scoring.weights = {
+            ...typedConfig.scoring.weights,
+            ...options.weights,
+        };
+        for (const [key, value] of Object.entries(options.weights)) {
+            changes.push(`  weight.${key}: ${value}`);
+        }
+    }
+    if (options.biases && Object.keys(options.biases).length > 0) {
+        const existingBiases = typedConfig.scoring.biases;
+        typedConfig.scoring.biases = {
+            ...existingBiases,
+            ...options.biases,
+            plans: {
+                ...(existingBiases?.plans ?? {}),
+                ...(options.biases.plans ?? {}),
+            },
+            personas: {
+                ...(existingBiases?.personas ?? {}),
+                ...(options.biases.personas ?? {}),
+            },
+            statuses: {
+                ...(existingBiases?.statuses ?? {}),
+                ...(options.biases.statuses ?? {}),
+            },
+        };
+        if (options.biases.plans) {
+            for (const [plan, value] of Object.entries(options.biases.plans)) {
+                changes.push(`  bias.plan:${plan}=${value}`);
+            }
+        }
+        if (options.biases.personas) {
+            for (const [persona, value] of Object.entries(options.biases.personas)) {
+                changes.push(`  bias.persona:${persona}=${value}`);
+            }
+        }
+        if (options.biases.statuses) {
+            for (const [status, value] of Object.entries(options.biases.statuses)) {
+                changes.push(`  bias.status:${status}=${value}`);
+            }
+        }
+    }
+    if (changes.length === 0) {
+        return 'No scoring changes specified. Use --preset, --weight, or --bias to update scoring.';
+    }
+    writeFileSync(configPath, JSON.stringify(typedConfig, null, 2));
+    const lines = [];
+    lines.push('Updated scoring configuration:');
+    lines.push('');
+    lines.push(...changes);
+    lines.push('');
+    lines.push(`Config file: ${configPath}`);
+    return lines.join('\n');
+}
 /**
  * Print the resolved config file path.
  *