@rotifer/playground 0.8.1 → 0.8.5

package/dist/publish/pre-publish-check.js

@@ -0,0 +1,228 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.runPrePublishChecks = runPrePublishChecks;
+const node_fs_1 = require("node:fs");
+const node_path_1 = require("node:path");
+const index_js_1 = require("../scanner/index.js");
+const WASM_MAGIC = new Uint8Array([0x00, 0x61, 0x73, 0x6d]); // \0asm
+const MAX_WASM_SIZE = 50 * 1024 * 1024; // 50 MB — suspiciously large for a Gene
+const SENSITIVE_PATTERNS = [
+    { label: "AWS key", pattern: /AKIA[0-9A-Z]{16}/ },
+    { label: "GitHub token", pattern: /ghp_[A-Za-z0-9]{36}/ },
+    { label: "npm token", pattern: /npm_[A-Za-z0-9]{36}/ },
+    { label: "Supabase service key", pattern: /eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9\.[A-Za-z0-9_-]{50,}/ },
+    { label: "Private key block", pattern: /-----BEGIN (?:RSA |EC |DSA )?PRIVATE KEY-----/ },
+    { label: "Generic secret assignment", pattern: /(?:secret|password|token|api_key)\s*[:=]\s*["'][A-Za-z0-9+/=]{20,}["']/i },
+];
+const SCAN_EXTENSIONS = new Set([".ts", ".js", ".mts", ".mjs", ".cjs", ".json", ".md"]);
+function collectAllFiles(dir) {
+    const files = [];
+    const walk = (d) => {
+        let entries;
+        try {
+            entries = (0, node_fs_1.readdirSync)(d);
+        }
+        catch {
+            return;
+        }
+        for (const entry of entries) {
+            if (entry === "node_modules" || entry === ".git" || entry === "dist")
+                continue;
+            const full = (0, node_path_1.join)(d, entry);
+            try {
+                const st = (0, node_fs_1.statSync)(full);
+                if (st.isDirectory()) {
+                    walk(full);
+                }
+                else if (SCAN_EXTENSIONS.has((0, node_path_1.extname)(entry))) {
+                    files.push(full);
+                }
+            }
+            catch {
+                // skip unreadable entries
+            }
+        }
+    };
+    walk(dir);
+    return files;
+}
+function checkVgScan(geneDir, geneName) {
+    const result = (0, index_js_1.scan)(geneDir, geneName, { scanAll: true });
+    if (result.grade === "?") {
+        return {
+            check: { name: "V(g) Security Scan", status: "pass", message: "No code files found (pure-config gene)" },
+            scanResult: result,
+        };
+    }
+    if (result.grade === "D") {
+        const criticals = result.findings.filter((f) => f.severity === "CRITICAL");
+        return {
+            check: {
+                name: "V(g) Security Scan",
+                status: "fail",
+                message: `Grade D — ${criticals.length} CRITICAL finding(s): ${criticals.map((f) => f.rule).join(", ")}`,
+            },
+            scanResult: result,
+        };
+    }
+    if (result.grade === "C") {
+        return {
+            check: {
+                name: "V(g) Security Scan",
+                status: "warn",
+                message: `Grade C — ${result.findings.length} finding(s). Consider fixing HIGH-severity issues before publish.`,
+            },
+            scanResult: result,
+        };
+    }
+    return {
+        check: {
+            name: "V(g) Security Scan",
+            status: "pass",
+            message: `Grade ${result.grade} — ${result.findings.length} finding(s), ${result.stats.files_scanned} file(s) scanned`,
+        },
+        scanResult: result,
+    };
+}
+function checkIrWasm(geneDir) {
+    const wasmPath = (0, node_path_1.join)(geneDir, "gene.ir.wasm");
+    if (!(0, node_fs_1.existsSync)(wasmPath)) {
+        return { name: "IR WASM Integrity", status: "pass", message: "No WASM binary (non-Native gene)" };
+    }
+    const buf = (0, node_fs_1.readFileSync)(wasmPath);
+    if (buf.length === 0) {
+        return { name: "IR WASM Integrity", status: "fail", message: "WASM binary is empty (0 bytes)" };
+    }
+    const header = new Uint8Array(buf.buffer, buf.byteOffset, Math.min(4, buf.length));
+    if (header.length < 4 || !WASM_MAGIC.every((b, i) => header[i] === b)) {
+        return { name: "IR WASM Integrity", status: "fail", message: "Invalid WASM magic bytes — file may be corrupted" };
+    }
+    if (buf.length > MAX_WASM_SIZE) {
+        const sizeMB = (buf.length / (1024 * 1024)).toFixed(1);
+        return { name: "IR WASM Integrity", status: "warn", message: `WASM binary unusually large (${sizeMB} MB)` };
+    }
+    const sizeKB = (buf.length / 1024).toFixed(1);
+    return { name: "IR WASM Integrity", status: "pass", message: `Valid WASM binary (${sizeKB} KB)` };
+}
+function checkPhenotypeSchema(geneDir) {
+    const phenotypePath = (0, node_path_1.join)(geneDir, "phenotype.json");
+    if (!(0, node_fs_1.existsSync)(phenotypePath)) {
+        return { name: "Phenotype Schema", status: "fail", message: "Missing phenotype.json" };
+    }
+    let phenotype;
+    try {
+        phenotype = JSON.parse((0, node_fs_1.readFileSync)(phenotypePath, "utf-8"));
+    }
+    catch (e) {
+        return { name: "Phenotype Schema", status: "fail", message: `Invalid JSON: ${e.message}` };
+    }
+    const missing = [];
+    for (const field of ["domain", "version", "description", "inputSchema"]) {
+        if (!phenotype[field])
+            missing.push(field);
+    }
+    if (missing.length > 0) {
+        return { name: "Phenotype Schema", status: "warn", message: `Missing recommended fields: ${missing.join(", ")}` };
+    }
+    const fidelity = phenotype.fidelity;
+    if (fidelity && !["Wrapped", "Native", "Hybrid"].includes(fidelity)) {
+        return { name: "Phenotype Schema", status: "fail", message: `Invalid fidelity value: "${fidelity}"` };
+    }
+    return { name: "Phenotype Schema", status: "pass", message: "All required fields present" };
+}
+function checkSensitiveData(geneDir) {
+    const files = collectAllFiles(geneDir);
+    const leaks = [];
+    for (const file of files) {
+        if (file.endsWith(".wasm"))
+            continue;
+        let content;
+        try {
+            content = (0, node_fs_1.readFileSync)(file, "utf-8");
+        }
+        catch {
+            continue;
+        }
+        for (const { label, pattern } of SENSITIVE_PATTERNS) {
+            if (pattern.test(content)) {
+                const relPath = file.replace(geneDir + "/", "");
+                leaks.push(`${label} in ${relPath}`);
+            }
+        }
+    }
+    if (leaks.length > 0) {
+        return {
+            name: "Sensitive Data Scan",
+            status: "fail",
+            message: `Found ${leaks.length} potential secret(s): ${leaks.slice(0, 3).join("; ")}${leaks.length > 3 ? ` (+${leaks.length - 3} more)` : ""}`,
+        };
+    }
+    return { name: "Sensitive Data Scan", status: "pass", message: `Scanned ${files.length} file(s), no secrets detected` };
+}
+function checkDependencies(geneDir) {
+    const phenotypePath = (0, node_path_1.join)(geneDir, "phenotype.json");
+    if (!(0, node_fs_1.existsSync)(phenotypePath)) {
+        return { name: "Dependency Audit", status: "pass", message: "No phenotype.json to audit" };
+    }
+    let phenotype;
+    try {
+        phenotype = JSON.parse((0, node_fs_1.readFileSync)(phenotypePath, "utf-8"));
+    }
+    catch {
+        return { name: "Dependency Audit", status: "pass", message: "Could not parse phenotype.json" };
+    }
+    const deps = phenotype.dependencies;
+    if (!Array.isArray(deps) || deps.length === 0) {
+        return { name: "Dependency Audit", status: "pass", message: "No gene dependencies declared" };
+    }
+    const pkgJsonPath = (0, node_path_1.join)(geneDir, "package.json");
+    if (!(0, node_fs_1.existsSync)(pkgJsonPath)) {
+        return { name: "Dependency Audit", status: "pass", message: `${deps.length} gene dependency(ies) — no package.json to audit` };
+    }
+    let pkg;
+    try {
+        pkg = JSON.parse((0, node_fs_1.readFileSync)(pkgJsonPath, "utf-8"));
+    }
+    catch {
+        return { name: "Dependency Audit", status: "warn", message: "Could not parse package.json" };
+    }
+    const allDeps = { ...(pkg.dependencies || {}), ...(pkg.devDependencies || {}) };
+    const warnings = [];
+    for (const [name, ver] of Object.entries(allDeps)) {
+        if (typeof ver === "string" && (ver.startsWith("file:") || ver.startsWith("link:"))) {
+            warnings.push(`${name}: local reference (${ver})`);
+        }
+        if (typeof ver === "string" && ver.includes("github:")) {
+            warnings.push(`${name}: GitHub reference (unversioned)`);
+        }
+    }
+    if (warnings.length > 0) {
+        return {
+            name: "Dependency Audit",
+            status: "warn",
+            message: `${warnings.length} concern(s): ${warnings.join("; ")}`,
+        };
+    }
+    return { name: "Dependency Audit", status: "pass", message: `${Object.keys(allDeps).length} package(s) OK` };
+}
+function runPrePublishChecks(geneDir, geneName) {
+    const checks = [];
+    let scanResult = null;
+    const vg = checkVgScan(geneDir, geneName);
+    checks.push(vg.check);
+    scanResult = vg.scanResult;
+    checks.push(checkIrWasm(geneDir));
+    checks.push(checkPhenotypeSchema(geneDir));
+    checks.push(checkSensitiveData(geneDir));
+    checks.push(checkDependencies(geneDir));
+    const blocking = checks.filter((c) => c.status === "fail");
+    const grade = scanResult?.grade ?? "?";
+    return {
+        passed: blocking.length === 0,
+        grade,
+        checks,
+        blocking,
+        scanResult,
+    };
+}
+//# sourceMappingURL=pre-publish-check.js.map

package/dist/publish/pre-publish-check.js.map

@@ -0,0 +1 @@
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package/dist/runtime/domain-failover.d.ts

@@ -4,7 +4,7 @@
  * L2 Calibration auto-failover: when a gene fails, try the next-best
  * gene in the same domain, ranked by running fitness score.
  *
- * Ported from experiments/api-apocalypse/rotifer-agent.ts into the
+ * Ported from examples/api-apocalypse/rotifer-agent.ts into the
  * production runtime. Works with both WASM sandbox and Node.js execution.
  */
 export interface GeneExecutor {

package/dist/runtime/domain-failover.js

@@ -5,7 +5,7 @@
  * L2 Calibration auto-failover: when a gene fails, try the next-best
  * gene in the same domain, ranked by running fitness score.
  *
- * Ported from experiments/api-apocalypse/rotifer-agent.ts into the
+ * Ported from examples/api-apocalypse/rotifer-agent.ts into the
  * production runtime. Works with both WASM sandbox and Node.js execution.
  */
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/runtime/network-gateway.d.ts

@@ -20,7 +20,7 @@ export interface GatewayResponse {
     status: number;
     headers: Record<string, string>;
     body: string;
-    truncated: boolean;
+    isTruncated: boolean;
 }
 export declare class NetworkGatewayError extends Error {
     readonly code: "DOMAIN_BLOCKED" | "RATE_LIMITED" | "TIMEOUT" | "RESPONSE_TOO_LARGE" | "NETWORK_ERROR";

package/dist/runtime/network-gateway.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"network-gateway.d.ts","sourceRoot":"","sources":["../../src/runtime/network-gateway.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,MAAM,WAAW,aAAa;IAC5B,cAAc,EAAE,MAAM,EAAE,CAAC;IACzB,YAAY,EAAE,MAAM,CAAC;IACrB,gBAAgB,EAAE,MAAM,CAAC;IACzB,iBAAiB,EAAE,MAAM,CAAC;CAC3B;AAED,MAAM,WAAW,mBAAmB;IAClC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACjC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,eAAe;IAC9B,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,OAAO,CAAC;CACtB;AAED,qBAAa,mBAAoB,SAAQ,KAAK;aAE1B,IAAI,EAChB,gBAAgB,GAChB,cAAc,GACd,SAAS,GACT,oBAAoB,GACpB,eAAe;gBALH,IAAI,EAChB,gBAAgB,GAChB,cAAc,GACd,SAAS,GACT,oBAAoB,GACpB,eAAe,EACnB,OAAO,EAAE,MAAM;CAKlB;AASD,qBAAa,cAAc;IACzB,OAAO,CAAC,MAAM,CAAgB;IAC9B,OAAO,CAAC,iBAAiB,CAAgB;IACzC,OAAO,CAAC,aAAa,CAAK;IAC1B,OAAO,CAAC,UAAU,CAAK;gBAEX,MAAM,CAAC,EAAE,OAAO,CAAC,aAAa,CAAC;IAI3C,IAAI,KAAK;;;;MAMR;IAEK,KAAK,CAAC,GAAG,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,mBAAmB,GAAG,OAAO,CAAC,eAAe,CAAC;IAkDjF,OAAO,CAAC,cAAc;IA0BtB,OAAO,CAAC,gBAAgB;YAiBV,cAAc;CAmC7B;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,OAAO,CAAC,aAAa,CAAC,GAC7B;IACD,YAAY,EAAE,CAAC,GAAG,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,mBAAmB,KAAK,OAAO,CAAC,eAAe,CAAC,CAAC;IACvF,OAAO,EAAE,cAAc,CAAC;CACzB,CAMA"}

package/dist/runtime/network-gateway.js

@@ -51,7 +51,7 @@ class NetworkGateway {
                 body: options?.body,
                 signal: controller.signal,
             });
-            const { text, truncated } = await this.readBodyCapped(response);
+            const { text, isTruncated } = await this.readBodyCapped(response);
             this.totalRequests++;
             this.totalBytes += text.length;
             const headers = {};
@@ -62,7 +62,7 @@ class NetworkGateway {
                 status: response.status,
                 headers,
                 body: text,
-                truncated,
+                isTruncated,
             };
         }
         catch (err) {
@@ -83,13 +83,13 @@ class NetworkGateway {
         catch {
             throw new NetworkGatewayError("DOMAIN_BLOCKED", `Invalid URL: ${url}`);
         }
-        const allowed = this.config.allowedDomains.some((d) => {
+        const isAllowed = this.config.allowedDomains.some((d) => {
             if (d.startsWith("*.")) {
                 return hostname.endsWith(d.slice(1)) || hostname === d.slice(2);
             }
             return hostname === d;
         });
-        if (!allowed) {
+        if (!isAllowed) {
             throw new NetworkGatewayError("DOMAIN_BLOCKED", `Domain "${hostname}" is not in the allowed list: [${this.config.allowedDomains.join(", ")}]`);
         }
     }
@@ -105,21 +105,21 @@ class NetworkGateway {
     async readBodyCapped(response) {
         const reader = response.body?.getReader();
         if (!reader) {
-            return { text: "", truncated: false };
+            return { text: "", isTruncated: false };
         }
         const chunks = [];
         let totalSize = 0;
-        let truncated = false;
+        let isTruncated = false;
         while (true) {
-            const { done, value } = await reader.read();
-            if (done)
+            const { done: isDone, value } = await reader.read();
+            if (isDone)
                 break;
             if (totalSize + value.length > this.config.maxResponseBytes) {
                 const remaining = this.config.maxResponseBytes - totalSize;
                 if (remaining > 0) {
                     chunks.push(value.slice(0, remaining));
                 }
-                truncated = true;
+                isTruncated = true;
                 reader.cancel();
                 break;
             }
@@ -129,7 +129,7 @@ class NetworkGateway {
         const decoder = new TextDecoder();
         const text = chunks.map((c) => decoder.decode(c, { stream: true })).join("") +
             decoder.decode();
-        return { text, truncated };
+        return { text, isTruncated };
     }
 }
 exports.NetworkGateway = NetworkGateway;

package/dist/runtime/network-gateway.js.map

@@ -1 +1 @@
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package/dist/scanner/scanner.js

@@ -67,8 +67,8 @@ function computeGrade(findings) {
     return "A";
 }
 function scan(dir, skillId, options) {
-    const scanAll = options?.scanAll ?? false;
-    if (!scanAll && !hasSrcDirectory(dir)) {
+    const shouldScanAll = options?.scanAll ?? false;
+    if (!shouldScanAll && !hasSrcDirectory(dir)) {
         return {
             skill_id: skillId ?? dir,
             scanned_at: new Date().toISOString(),
@@ -77,7 +77,7 @@ function scan(dir, skillId, options) {
             stats: { files_scanned: 0, lines_of_code: 0 },
         };
     }
-    const scanDir = scanAll ? dir : (0, node_path_1.join)(dir, "src");
+    const scanDir = shouldScanAll ? dir : (0, node_path_1.join)(dir, "src");
     const files = collectCodeFiles(scanDir);
     const allFindings = [];
     let totalLines = 0;

package/dist/scanner/scanner.js.map

@@ -1 +1 @@
-{"version":3,"file":"scanner.js","sourceRoot":"","sources":["../../src/scanner/scanner.ts"],"names":[],"mappings":";;AA6BA,4BA2BC;AAED,oCAQC;AAMD,oBAkCC;AA1GD,qCAA0E;AAC1E,yCAAoD;AACpD,yCAAwC;AAGxC,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC;AAEtG,SAAS,gBAAgB,CAAC,GAAW;IACnC,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,IAAI,GAAG,CAAC,CAAS,EAAE,EAAE;QACzB,KAAK,MAAM,KAAK,IAAI,IAAA,qBAAW,EAAC,CAAC,CAAC,EAAE,CAAC;YACnC,IAAI,KAAK,KAAK,cAAc,IAAI,KAAK,KAAK,MAAM,IAAI,KAAK,KAAK,MAAM;gBAAE,SAAS;YAC/E,MAAM,IAAI,GAAG,IAAA,gBAAI,EAAC,CAAC,EAAE,KAAK,CAAC,CAAC;YAC5B,MAAM,EAAE,GAAG,IAAA,kBAAQ,EAAC,IAAI,CAAC,CAAC;YAC1B,IAAI,EAAE,CAAC,WAAW,EAAE,EAAE,CAAC;gBACrB,IAAI,CAAC,IAAI,CAAC,CAAC;YACb,CAAC;iBAAM,IAAI,eAAe,CAAC,GAAG,CAAC,IAAA,mBAAO,EAAC,KAAK,CAAC,CAAC,EAAE,CAAC;gBAC/C,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YACnB,CAAC;QACH,CAAC;IACH,CAAC,CAAC;IACF,IAAI,CAAC,GAAG,CAAC,CAAC;IACV,OAAO,KAAK,CAAC;AACf,CAAC;AAED,SAAS,eAAe,CAAC,GAAW;IAClC,OAAO,IAAA,oBAAU,EAAC,IAAA,gBAAI,EAAC,GAAG,EAAE,KAAK,CAAC,CAAC,CAAC;AACtC,CAAC;AAED,SAAgB,QAAQ,CAAC,QAAgB,EAAE,OAAe;IACxD,MAAM,OAAO,GAAG,IAAA,sBAAY,EAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;IAChD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAClC,MAAM,OAAO,GAAG,IAAA,oBAAQ,EAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IAC5C,MAAM,QAAQ,GAAc,EAAE,CAAC;IAE/B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACtC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QACtB,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC,UAAU,CAAC,GAAG,CAAC;YAAE,SAAS;QAEpF,KAAK,MAAM,IAAI,IAAI,qBAAU,EAAE,CAAC;YAC9B,KAAK,MAAM,OAAO,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;gBACpC,IAAI,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;oBACvB,QAAQ,CAAC,IAAI,CAAC;wBACZ,IAAI,EAAE,IAAI,CAAC,EAAE;wBACb,QAAQ,EAAE,IAAI,CAAC,QAAQ;wBACvB,IAAI,EAAE,OAAO;wBACb,IAAI,EAAE,CAAC,GAAG,CAAC;wBACX,OAAO,EAAE,IAAI,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;qBACnC,CAAC,CAAC;oBACH,MAAM;gBACR,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,SAAgB,YAAY,CAAC,QAAmB;IAC9C,MAAM,SAAS,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,UAAU,CAAC,CAAC,MAAM,CAAC;IAC3E,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,MAAM,CAAC,CAAC,MAAM,CAAC;IAEnE,IAAI,SAAS,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC/B,IAAI,KAAK,GAAG,CAAC;QAAE,OAAO,GAAG,CAAC;IAC1B,IAAI,KAAK,GAAG,CAAC;QAAE,OAAO,GAAG,CAAC;IAC1B,OAAO,GAAG,CAAC;AACb,CAAC;AAMD,SAAgB,IAAI,CAAC,GAAW,EAAE,OAAgB,EAAE,OAAqB;IACvE,MAAM,OAAO,GAAG,OAAO,EAAE,OAAO,IAAI,KAAK,CAAC;IAE1C,IAAI,CAAC,OAAO,IAAI,CAAC,eAAe,CAAC,GAAG,CAAC,EAAE,CAAC;QACtC,OAAO;YACL,QAAQ,EAAE,OAAO,IAAI,GAAG;YACxB,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;YACpC,KAAK,EAAE,GAAG;YACV,QAAQ,EAAE,EAAE;YACZ,KAAK,EAAE,EAAE,aAAa,EAAE,CAAC,EAAE,aAAa,EAAE,CAAC,EAAE;SAC9C,CAAC;IACJ,CAAC;IAED,MAAM,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAA,gBAAI,EAAC,GAAG,EAAE,KAAK,CAAC,CAAC;IACjD,MAAM,KAAK,GAAG,gBAAgB,CAAC,OAAO,CAAC,CAAC;IACxC,MAAM,WAAW,GAAc,EAAE,CAAC;IAClC,IAAI,UAAU,GAAG,CAAC,CAAC;IAEnB,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,OAAO,GAAG,IAAA,sBAAY,EAAC,IAAI,EAAE,OAAO,CAAC,CAAC;QAC5C,UAAU,IAAI,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC;QACzC,WAAW,CAAC,IAAI,CAAC,GAAG,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC;IAC3C,CAAC;IAED,OAAO;QACL,QAAQ,EAAE,OAAO,IAAI,GAAG;QACxB,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;QACpC,KAAK,EAAE,YAAY,CAAC,WAAW,CAAC;QAChC,QAAQ,EAAE,WAAW;QACrB,KAAK,EAAE;YACL,aAAa,EAAE,KAAK,CAAC,MAAM;YAC3B,aAAa,EAAE,UAAU;SAC1B;KACF,CAAC;AACJ,CAAC"}
+{"version":3,"file":"scanner.js","sourceRoot":"","sources":["../../src/scanner/scanner.ts"],"names":[],"mappings":";;AA6BA,4BA2BC;AAED,oCAQC;AAMD,oBAkCC;AA1GD,qCAA0E;AAC1E,yCAAoD;AACpD,yCAAwC;AAGxC,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC;AAEtG,SAAS,gBAAgB,CAAC,GAAW;IACnC,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,IAAI,GAAG,CAAC,CAAS,EAAE,EAAE;QACzB,KAAK,MAAM,KAAK,IAAI,IAAA,qBAAW,EAAC,CAAC,CAAC,EAAE,CAAC;YACnC,IAAI,KAAK,KAAK,cAAc,IAAI,KAAK,KAAK,MAAM,IAAI,KAAK,KAAK,MAAM;gBAAE,SAAS;YAC/E,MAAM,IAAI,GAAG,IAAA,gBAAI,EAAC,CAAC,EAAE,KAAK,CAAC,CAAC;YAC5B,MAAM,EAAE,GAAG,IAAA,kBAAQ,EAAC,IAAI,CAAC,CAAC;YAC1B,IAAI,EAAE,CAAC,WAAW,EAAE,EAAE,CAAC;gBACrB,IAAI,CAAC,IAAI,CAAC,CAAC;YACb,CAAC;iBAAM,IAAI,eAAe,CAAC,GAAG,CAAC,IAAA,mBAAO,EAAC,KAAK,CAAC,CAAC,EAAE,CAAC;gBAC/C,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YACnB,CAAC;QACH,CAAC;IACH,CAAC,CAAC;IACF,IAAI,CAAC,GAAG,CAAC,CAAC;IACV,OAAO,KAAK,CAAC;AACf,CAAC;AAED,SAAS,eAAe,CAAC,GAAW;IAClC,OAAO,IAAA,oBAAU,EAAC,IAAA,gBAAI,EAAC,GAAG,EAAE,KAAK,CAAC,CAAC,CAAC;AACtC,CAAC;AAED,SAAgB,QAAQ,CAAC,QAAgB,EAAE,OAAe;IACxD,MAAM,OAAO,GAAG,IAAA,sBAAY,EAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;IAChD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAClC,MAAM,OAAO,GAAG,IAAA,oBAAQ,EAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IAC5C,MAAM,QAAQ,GAAc,EAAE,CAAC;IAE/B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACtC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QACtB,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC,UAAU,CAAC,GAAG,CAAC;YAAE,SAAS;QAEpF,KAAK,MAAM,IAAI,IAAI,qBAAU,EAAE,CAAC;YAC9B,KAAK,MAAM,OAAO,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;gBACpC,IAAI,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;oBACvB,QAAQ,CAAC,IAAI,CAAC;wBACZ,IAAI,EAAE,IAAI,CAAC,EAAE;wBACb,QAAQ,EAAE,IAAI,CAAC,QAAQ;wBACvB,IAAI,EAAE,OAAO;wBACb,IAAI,EAAE,CAAC,GAAG,CAAC;wBACX,OAAO,EAAE,IAAI,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;qBACnC,CAAC,CAAC;oBACH,MAAM;gBACR,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,SAAgB,YAAY,CAAC,QAAmB;IAC9C,MAAM,SAAS,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,UAAU,CAAC,CAAC,MAAM,CAAC;IAC3E,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,MAAM,CAAC,CAAC,MAAM,CAAC;IAEnE,IAAI,SAAS,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC/B,IAAI,KAAK,GAAG,CAAC;QAAE,OAAO,GAAG,CAAC;IAC1B,IAAI,KAAK,GAAG,CAAC;QAAE,OAAO,GAAG,CAAC;IAC1B,OAAO,GAAG,CAAC;AACb,CAAC;AAMD,SAAgB,IAAI,CAAC,GAAW,EAAE,OAAgB,EAAE,OAAqB;IACvE,MAAM,aAAa,GAAG,OAAO,EAAE,OAAO,IAAI,KAAK,CAAC;IAEhD,IAAI,CAAC,aAAa,IAAI,CAAC,eAAe,CAAC,GAAG,CAAC,EAAE,CAAC;QAC5C,OAAO;YACL,QAAQ,EAAE,OAAO,IAAI,GAAG;YACxB,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;YACpC,KAAK,EAAE,GAAG;YACV,QAAQ,EAAE,EAAE;YACZ,KAAK,EAAE,EAAE,aAAa,EAAE,CAAC,EAAE,aAAa,EAAE,CAAC,EAAE;SAC9C,CAAC;IACJ,CAAC;IAED,MAAM,OAAO,GAAG,aAAa,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAA,gBAAI,EAAC,GAAG,EAAE,KAAK,CAAC,CAAC;IACvD,MAAM,KAAK,GAAG,gBAAgB,CAAC,OAAO,CAAC,CAAC;IACxC,MAAM,WAAW,GAAc,EAAE,CAAC;IAClC,IAAI,UAAU,GAAG,CAAC,CAAC;IAEnB,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,OAAO,GAAG,IAAA,sBAAY,EAAC,IAAI,EAAE,OAAO,CAAC,CAAC;QAC5C,UAAU,IAAI,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC;QACzC,WAAW,CAAC,IAAI,CAAC,GAAG,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC;IAC3C,CAAC;IAED,OAAO;QACL,QAAQ,EAAE,OAAO,IAAI,GAAG;QACxB,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;QACpC,KAAK,EAAE,YAAY,CAAC,WAAW,CAAC;QAChC,QAAQ,EAAE,WAAW;QACrB,KAAK,EAAE;YACL,aAAa,EAAE,KAAK,CAAC,MAAM;YAC3B,aAAa,EAAE,UAAU;SAC1B;KACF,CAAC;AACJ,CAAC"}

package/dist/utils/binding.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"binding.d.ts","sourceRoot":"","sources":["../../src/utils/binding.ts"],"names":[],"mappings":"AAGA,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,eAAe,EAAE,MAAM,CAAC;IACxB,aAAa,EAAE,OAAO,CAAC;CACxB;AAED,MAAM,WAAW,mBAAmB;IAClC,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,OAAO,CAAC;IAChB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,OAAO,CAAC;IAChB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,OAAO,CAAC;IAChB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,aAAa,EAAE,MAAM,CAAC;IACtB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,aAAa;IAC5B,iBAAiB,CACf,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,MAAM,GACjB,iBAAiB,CAAC;IACrB,cAAc,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAC;IAC1C,iBAAiB,IAAI,MAAM,CAAC;IAC5B,mBAAmB,IAAI,MAAM,CAAC;IAC9B,sBAAsB,IAAI,MAAM,CAAC;IACjC,sBAAsB,IAAI,MAAM,CAAC;IACjC,WAAW,CACT,SAAS,EAAE,MAAM,EACjB,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,MAAM,EACrB,eAAe,CAAC,EAAE,MAAM,GACvB,mBAAmB,CAAC;IACvB,OAAO,CACL,aAAa,EAAE,MAAM,EACrB,eAAe,CAAC,EAAE,MAAM,EACxB,eAAe,CAAC,EAAE,MAAM,GACvB,iBAAiB,CAAC;IACrB,cAAc,CACZ,WAAW,EAAE,MAAM,EACnB,eAAe,EAAE,MAAM,EACvB,SAAS,EAAE,MAAM,GAChB,iBAAiB,CAAC;CACtB;AAKD;;;GAGG;AACH,wBAAgB,cAAc,IAAI,aAAa,GAAG,IAAI,CAkCrD;AAED,wBAAgB,iBAAiB,IAAI,OAAO,CAE3C"}
+{"version":3,"file":"binding.d.ts","sourceRoot":"","sources":["../../src/utils/binding.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,eAAe,EAAE,MAAM,CAAC;IACxB,aAAa,EAAE,OAAO,CAAC;CACxB;AAED,MAAM,WAAW,mBAAmB;IAClC,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,OAAO,CAAC;IAChB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,OAAO,CAAC;IAChB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,OAAO,CAAC;IAChB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,aAAa,EAAE,MAAM,CAAC;IACtB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,aAAa;IAC5B,iBAAiB,CACf,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,MAAM,GACjB,iBAAiB,CAAC;IACrB,cAAc,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAC;IAC1C,iBAAiB,IAAI,MAAM,CAAC;IAC5B,mBAAmB,IAAI,MAAM,CAAC;IAC9B,sBAAsB,IAAI,MAAM,CAAC;IACjC,sBAAsB,IAAI,MAAM,CAAC;IACjC,WAAW,CACT,SAAS,EAAE,MAAM,EACjB,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,MAAM,EACrB,eAAe,CAAC,EAAE,MAAM,GACvB,mBAAmB,CAAC;IACvB,OAAO,CACL,aAAa,EAAE,MAAM,EACrB,eAAe,CAAC,EAAE,MAAM,EACxB,eAAe,CAAC,EAAE,MAAM,GACvB,iBAAiB,CAAC;IACrB,cAAc,CACZ,WAAW,EAAE,MAAM,EACnB,eAAe,EAAE,MAAM,EACvB,SAAS,EAAE,MAAM,GAChB,iBAAiB,CAAC;CACtB;AAKD;;;GAGG;AACH,wBAAgB,cAAc,IAAI,aAAa,GAAG,IAAI,CAkCrD;AAED,wBAAgB,iBAAiB,IAAI,OAAO,CAE3C"}

package/dist/utils/binding.js

@@ -4,16 +4,17 @@ exports.tryLoadBinding = tryLoadBinding;
 exports.isNativeAvailable = isNativeAvailable;
 const node_path_1 = require("node:path");
 const node_fs_1 = require("node:fs");
+const private_fs_js_1 = require("./private-fs.js");
 let _binding = null;
-let _loadAttempted = false;
+let _hasLoadAttempted = false;
 /**
  * Try to load the napi native addon.
  * Returns null if the addon is not available (fallback to pure-TS path).
  */
 function tryLoadBinding() {
-    if (_loadAttempted)
+    if (_hasLoadAttempted)
         return _binding;
-    _loadAttempted = true;
+    _hasLoadAttempted = true;
     const candidates = [
         (0, node_path_1.join)(__dirname, "..", "..", "index.darwin-arm64.node"),
         (0, node_path_1.join)(__dirname, "..", "..", "index.darwin-x64.node"),
@@ -27,7 +28,7 @@ function tryLoadBinding() {
                 const mod = require(candidate);
                 if (mod.PlaygroundBinding) {
                     const tmpDir = (0, node_path_1.join)(process.env.HOME || process.env.USERPROFILE || "/tmp", ".rotifer", "napi-binding");
-                    require("node:fs").mkdirSync(tmpDir, { recursive: true });
+                    (0, private_fs_js_1.ensurePrivateDir)(tmpDir);
                     const instance = new mod.PlaygroundBinding(tmpDir);
                     _binding = instance;
                     return _binding;

package/dist/utils/binding.js.map

@@ -1 +1 @@
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package/dist/utils/content-hash.d.ts

@@ -0,0 +1,3 @@
+export declare function canonicalSerialize(phenotype: Record<string, unknown>): string;
+export declare function contentHash(phenotype: Record<string, unknown>): string;
+//# sourceMappingURL=content-hash.d.ts.map

package/dist/utils/content-hash.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"content-hash.d.ts","sourceRoot":"","sources":["../../src/utils/content-hash.ts"],"names":[],"mappings":"AAYA,wBAAgB,kBAAkB,CAChC,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GACjC,MAAM,CAER;AAED,wBAAgB,WAAW,CAAC,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,MAAM,CAItE"}

package/dist/utils/content-hash.js

@@ -0,0 +1,25 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.canonicalSerialize = canonicalSerialize;
+exports.contentHash = contentHash;
+const node_crypto_1 = require("node:crypto");
+function sortKeysDeep(obj) {
+    if (obj === null || typeof obj !== "object")
+        return obj;
+    if (Array.isArray(obj))
+        return obj.map(sortKeysDeep);
+    const sorted = {};
+    for (const key of Object.keys(obj).sort()) {
+        sorted[key] = sortKeysDeep(obj[key]);
+    }
+    return sorted;
+}
+function canonicalSerialize(phenotype) {
+    return JSON.stringify(sortKeysDeep(phenotype));
+}
+function contentHash(phenotype) {
+    return (0, node_crypto_1.createHash)("sha256")
+        .update(canonicalSerialize(phenotype))
+        .digest("hex");
+}
+//# sourceMappingURL=content-hash.js.map

package/dist/utils/content-hash.js.map

@@ -0,0 +1 @@
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package/dist/utils/display.d.ts

@@ -1,9 +1,18 @@
+import type { Command, Help } from "commander";
+export type OutputMode = "human" | "json" | "plain";
+export declare function setOutputMode(mode: OutputMode): void;
+export declare function getOutputMode(): OutputMode;
+export declare function isJsonMode(): boolean;
 export declare function success(message: string): void;
 export declare function error(message: string, detail?: string): void;
 export declare function info(message: string): void;
 export declare function warn(message: string): void;
-export declare function header(title: string): void;
+export declare function hint(message: string): void;
+export declare function header(title: string, opts?: {
+    separator?: boolean;
+}): void;
 export declare function keyValue(key: string, value: string): void;
+export declare const kv: typeof keyValue;
 export declare function geneId(id: string): string;
 export declare function rustStyleError(opts: {
     code: string;
@@ -13,4 +22,38 @@ export declare function rustStyleError(opts: {
     suggestion?: string;
     docsUrl?: string;
 }): void;
+export declare function link(text: string, url: string): string;
+export interface Spinner {
+    stop(successMessage?: string): void;
+    update(message: string): void;
+}
+export declare function spinner(message: string): Spinner;
+export declare function banner(version: string): string;
+export declare function formatGroupedHelp(cmd: Command, helper: Help): string;
+export declare function formatSubcommandHelp(cmd: Command, helper: Help): string;
+export declare function welcomeBanner(opts: {
+    version: string;
+    message?: string;
+    hints?: Array<[string, string]>;
+    docsUrl?: string;
+}): void;
+export declare function box(lines: string[], opts?: {
+    title?: string;
+}): void;
+export interface TableColumn<T = Record<string, unknown>> {
+    key: string;
+    label: string;
+    width?: number;
+    align?: "left" | "right";
+    format?: (value: unknown, row: T) => string;
+}
+export declare function table<T extends Record<string, unknown>>(data: T[], columns: TableColumn<T>[]): void;
+export declare function barChart(items: {
+    label: string;
+    value: number;
+}[], opts?: {
+    barWidth?: number;
+}): void;
+export declare function renderResult<T>(data: T, humanRenderer: (data: T) => void): void;
+export declare function stripAnsi(str: string): string;
 //# sourceMappingURL=display.d.ts.map

package/dist/utils/display.d.ts.map

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