npm - @n8n-dev/n8n-nodes-monarchinitiative - Versions diffs - 1.0.0 - Mend

@n8n-dev/n8n-nodes-monarchinitiative 1.0.0

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Files changed (97) hide show

package/dist/nodes/Monarchinitiative/resources/bioentityset/index.d.ts ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ import type { INodeProperties } from 'n8n-workflow';
2	+ export declare const bioentitysetDescription: INodeProperties[];

package/dist/nodes/Monarchinitiative/resources/bioentityset/index.js ADDED Viewed

@@ -0,0 +1,621 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.bioentitysetDescription = void 0;
+exports.bioentitysetDescription = [
+    {
+        "displayName": "Operation",
+        "name": "operation",
+        "type": "options",
+        "noDataExpression": true,
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ]
+            }
+        },
+        "options": [
+            {
+                "name": "Get Entity Set Associations",
+                "value": "Get Entity Set Associations",
+                "action": "Returns compact associations for a given input set",
+                "description": "Returns compact associations for a given input set",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/bioentityset/associations"
+                    }
+                }
+            },
+            {
+                "name": "Get Entity Set Summary",
+                "value": "Get Entity Set Summary",
+                "action": "Summary statistics for objects associated",
+                "description": "Summary statistics for objects associated",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/bioentityset/descriptor/counts"
+                    }
+                }
+            },
+            {
+                "name": "Get Entity Set Graph Resource",
+                "value": "Get Entity Set Graph Resource",
+                "action": "TODO Graph object spanning all entities",
+                "description": "TODO Graph object spanning all entities",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/bioentityset/graph"
+                    }
+                }
+            },
+            {
+                "name": "Get Over Representation",
+                "value": "Get Over Representation",
+                "action": "Summary statistics for objects associated",
+                "description": "Summary statistics for objects associated",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/bioentityset/overrepresentation"
+                    }
+                }
+            }
+        ],
+        "default": ""
+    },
+    {
+        "displayName": "GET /bioentityset/associations",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Associations"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Subject",
+        "name": "subject",
+        "description": "Entity ids to be examined, e.g. NCBIGene:9342, NCBIGene:7227, NCBIGene:8131, NCBIGene:157570, NCBIGene:51164, NCBIGene:6689, NCBIGene:6387",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "subject",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Associations"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Background",
+        "name": "background",
+        "description": "Entity ids in background set, e.g. NCBIGene:84570, NCBIGene:3630; used in over-representation tests",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "background",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Associations"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Object Category",
+        "name": "object_category",
+        "description": "E.g. phenotype, function",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "object_category",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Associations"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Object Slim",
+        "name": "object_slim",
+        "description": "Slim or subset to which the descriptors are to be mapped, NOT IMPLEMENTED",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "object_slim",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Associations"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /bioentityset/descriptor/counts",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Summary"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Subject",
+        "name": "subject",
+        "description": "Entity ids to be examined, e.g. NCBIGene:9342, NCBIGene:7227, NCBIGene:8131, NCBIGene:157570, NCBIGene:51164, NCBIGene:6689, NCBIGene:6387",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "subject",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Summary"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Background",
+        "name": "background",
+        "description": "Entity ids in background set, e.g. NCBIGene:84570, NCBIGene:3630; used in over-representation tests",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "background",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Summary"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Object Category",
+        "name": "object_category",
+        "description": "E.g. phenotype, function",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "object_category",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Summary"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Object Slim",
+        "name": "object_slim",
+        "description": "Slim or subset to which the descriptors are to be mapped, NOT IMPLEMENTED",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "object_slim",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Summary"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /bioentityset/graph",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Graph Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Subject",
+        "name": "subject",
+        "description": "Entity ids to be examined, e.g. NCBIGene:9342, NCBIGene:7227, NCBIGene:8131, NCBIGene:157570, NCBIGene:51164, NCBIGene:6689, NCBIGene:6387",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "subject",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Graph Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Background",
+        "name": "background",
+        "description": "Entity ids in background set, e.g. NCBIGene:84570, NCBIGene:3630; used in over-representation tests",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "background",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Graph Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Object Category",
+        "name": "object_category",
+        "description": "E.g. phenotype, function",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "object_category",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Graph Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Object Slim",
+        "name": "object_slim",
+        "description": "Slim or subset to which the descriptors are to be mapped, NOT IMPLEMENTED",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "object_slim",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Entity Set Graph Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /bioentityset/overrepresentation",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Over Representation"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Object Category",
+        "name": "object_category",
+        "description": "E.g. phenotype, function",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "object_category",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Over Representation"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Subject",
+        "name": "subject",
+        "description": "Entity ids to be examined, e.g. NCBIGene:9342, NCBIGene:7227, NCBIGene:8131, NCBIGene:157570, NCBIGene:51164, NCBIGene:6689, NCBIGene:6387",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "subject",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Over Representation"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Background",
+        "name": "background",
+        "description": "Entity ids in background set, e.g. NCBIGene:84570, NCBIGene:3630; used in over-representation tests",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "background",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Over Representation"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Subject Category",
+        "name": "subject_category",
+        "description": "Default: gene. Other types may be used e.g. disease but statistics may not make sense",
+        "default": "gene",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "subject_category",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Over Representation"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Max P Value",
+        "name": "max_p_value",
+        "description": "Exclude results with p-value greater than this",
+        "default": "0.05",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "max_p_value",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Over Representation"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Ontology",
+        "name": "ontology",
+        "description": "ontology id. Must be obo id. Examples: go, mp, hp, uberon (optional: will be inferred if left blank)",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "ontology",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Over Representation"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Taxon",
+        "name": "taxon",
+        "description": "must be NCBITaxon CURIE. Example: NCBITaxon:9606",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "taxon",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Bioentityset"
+                ],
+                "operation": [
+                    "Get Over Representation"
+                ]
+            }
+        }
+    },
+];
+//# sourceMappingURL=index.js.map

package/dist/nodes/Monarchinitiative/resources/bioentityset/index.js.map ADDED Viewed

@@ -0,0 +1 @@

+ 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package/dist/nodes/Monarchinitiative/resources/bioentityset-homologs/index.d.ts ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ import type { INodeProperties } from 'n8n-workflow';
2	+ export declare const bioentitysetHomologsDescription: INodeProperties[];