@n8n-dev/n8n-nodes-monarchinitiative 1.0.0

package/dist/nodes/Monarchinitiative/resources/ontology/index.js

@@ -0,0 +1,376 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ontologyDescription = void 0;
+exports.ontologyDescription = [
+    {
+        "displayName": "Operation",
+        "name": "operation",
+        "type": "options",
+        "noDataExpression": true,
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ]
+            }
+        },
+        "options": [
+            {
+                "name": "Get Ontology Terms Shared Ancestor",
+                "value": "Get Ontology Terms Shared Ancestor",
+                "action": "Returns the ancestor ontology terms shared by two ontology terms",
+                "description": "Returns the ancestor ontology terms shared by two ontology terms",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/ontology/shared/{{$parameter[\"subject\"]}}/{{$parameter[\"object\"]}}"
+                    }
+                }
+            },
+            {
+                "name": "Get Ontology Subset",
+                "value": "Get Ontology Subset",
+                "action": "Returns meta data of an ontology subset (slim)",
+                "description": "Returns meta data of an ontology subset (slim)",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/ontology/subset/{{$parameter[\"id\"]}}"
+                    }
+                }
+            },
+            {
+                "name": "Get Ontology Term",
+                "value": "Get Ontology Term",
+                "action": "Returns meta data of an ontology term",
+                "description": "Returns meta data of an ontology term",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/ontology/term/{{$parameter[\"id\"]}}"
+                    }
+                }
+            },
+            {
+                "name": "Get Ontology Term Graph",
+                "value": "Get Ontology Term Graph",
+                "action": "Returns graph of an ontology term",
+                "description": "Returns graph of an ontology term",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/ontology/term/{{$parameter[\"id\"]}}/graph"
+                    }
+                }
+            },
+            {
+                "name": "Get Ontology Term Subgraph",
+                "value": "Get Ontology Term Subgraph",
+                "action": "Extract a subgraph from an ontology term",
+                "description": "Extract a subgraph from an ontology term",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/ontology/term/{{$parameter[\"id\"]}}/subgraph"
+                    }
+                }
+            },
+            {
+                "name": "Get Ontology Term Subsets",
+                "value": "Get Ontology Term Subsets",
+                "action": "Returns subsets (slims) associated to an ontology term",
+                "description": "Returns subsets (slims) associated to an ontology term",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/ontology/term/{{$parameter[\"id\"]}}/subsets"
+                    }
+                }
+            }
+        ],
+        "default": ""
+    },
+    {
+        "displayName": "GET /ontology/shared/{subject}/{object}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Terms Shared Ancestor"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /ontology/subset/{id}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Subset"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /ontology/term/{id}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /ontology/term/{id}/graph",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term Graph"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Graph Type",
+        "name": "graph_type",
+        "description": "graph type ('topology_graph', 'regulates_transitivity_graph' or 'neighborhood_graph')",
+        "default": "topology_graph",
+        "type": "options",
+        "options": [
+            {
+                "name": "Topology Graph",
+                "value": "topology_graph"
+            },
+            {
+                "name": "Regulates Transitivity Graph",
+                "value": "regulates_transitivity_graph"
+            },
+            {
+                "name": "Neighborhood Graph",
+                "value": "neighborhood_graph"
+            },
+            {
+                "name": "Neighborhood Limited Graph",
+                "value": "neighborhood_limited_graph"
+            }
+        ],
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "graph_type",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term Graph"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /ontology/term/{id}/subgraph",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term Subgraph"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Cnode",
+        "name": "cnode",
+        "description": "Additional classes",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "cnode",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term Subgraph"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Include Ancestors",
+        "name": "include_ancestors",
+        "description": "Include Ancestors",
+        "default": true,
+        "type": "boolean",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "include_ancestors",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term Subgraph"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Include Descendants",
+        "name": "include_descendants",
+        "description": "Include Descendants",
+        "default": true,
+        "type": "boolean",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "include_descendants",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term Subgraph"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Relation",
+        "name": "relation",
+        "description": "Additional classes",
+        "default": "[\n  \"subClassOf\",\n  \"BFO:0000050\"\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "relation",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term Subgraph"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Include Meta",
+        "name": "include_meta",
+        "description": "Include metadata in response",
+        "default": false,
+        "type": "boolean",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "include_meta",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term Subgraph"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /ontology/term/{id}/subsets",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Ontology"
+                ],
+                "operation": [
+                    "Get Ontology Term Subsets"
+                ]
+            }
+        }
+    },
+];
+//# sourceMappingURL=index.js.map

package/dist/nodes/Monarchinitiative/resources/ontology/index.js.map

@@ -0,0 +1 @@
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package/dist/nodes/Monarchinitiative/resources/owl-ontology/index.d.ts

@@ -0,0 +1,2 @@
+import type { INodeProperties } from 'n8n-workflow';
+export declare const owlOntologyDescription: INodeProperties[];

package/dist/nodes/Monarchinitiative/resources/owl-ontology/index.js

@@ -0,0 +1,84 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.owlOntologyDescription = void 0;
+exports.owlOntologyDescription = [
+    {
+        "displayName": "Operation",
+        "name": "operation",
+        "type": "options",
+        "noDataExpression": true,
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Owl Ontology"
+                ]
+            }
+        },
+        "options": [
+            {
+                "name": "Get Dl Query",
+                "value": "Get Dl Query",
+                "action": "Placeholder - use OWLery for now",
+                "description": "Placeholder - use OWLery for now",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/owl/ontology/dlquery/{{$parameter[\"query\"]}}"
+                    }
+                }
+            },
+            {
+                "name": "Get Sparql Query",
+                "value": "Get Sparql Query",
+                "action": "Placeholder - use direct SPARQL endpoint for now",
+                "description": "Placeholder - use direct SPARQL endpoint for now",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/owl/ontology/sparql/{{$parameter[\"query\"]}}"
+                    }
+                }
+            }
+        ],
+        "default": ""
+    },
+    {
+        "displayName": "GET /owl/ontology/dlquery/{query}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Owl Ontology"
+                ],
+                "operation": [
+                    "Get Dl Query"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /owl/ontology/sparql/{query}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Owl Ontology"
+                ],
+                "operation": [
+                    "Get Sparql Query"
+                ]
+            }
+        }
+    },
+];
+//# sourceMappingURL=index.js.map

package/dist/nodes/Monarchinitiative/resources/owl-ontology/index.js.map

@@ -0,0 +1 @@
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package/dist/nodes/Monarchinitiative/resources/pair-sim/index.d.ts

@@ -0,0 +1,2 @@
+import type { INodeProperties } from 'n8n-workflow';
+export declare const pairSimDescription: INodeProperties[];

package/dist/nodes/Monarchinitiative/resources/pair-sim/index.js

@@ -0,0 +1,78 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.pairSimDescription = void 0;
+exports.pairSimDescription = [
+    {
+        "displayName": "Operation",
+        "name": "operation",
+        "type": "options",
+        "noDataExpression": true,
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Pair Sim"
+                ]
+            }
+        },
+        "options": [
+            {
+                "name": "Get Pair Sim Jaccard Resource",
+                "value": "Get Pair Sim Jaccard Resource",
+                "action": "Get pairwise similarity",
+                "description": "Get pairwise similarity",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/pair/sim/jaccard/{{$parameter[\"id1\"]}}/{{$parameter[\"id2\"]}}"
+                    }
+                }
+            }
+        ],
+        "default": ""
+    },
+    {
+        "displayName": "GET /pair/sim/jaccard/{id1}/{id2}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Pair Sim"
+                ],
+                "operation": [
+                    "Get Pair Sim Jaccard Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Object Category",
+        "name": "object_category",
+        "description": "e.g. disease, phenotype, gene. Two subjects will be compared based on overlap between associations to objects in this category",
+        "default": "",
+        "type": "string",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "object_category",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Pair Sim"
+                ],
+                "operation": [
+                    "Get Pair Sim Jaccard Resource"
+                ]
+            }
+        }
+    },
+];
+//# sourceMappingURL=index.js.map

package/dist/nodes/Monarchinitiative/resources/pair-sim/index.js.map

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package/dist/nodes/Monarchinitiative/resources/relation-usage/index.d.ts

@@ -0,0 +1,2 @@
+import type { INodeProperties } from 'n8n-workflow';
+export declare const relationUsageDescription: INodeProperties[];