@n8n-dev/n8n-nodes-monarchinitiative 1.0.0

package/dist/nodes/Monarchinitiative/resources/evidence-graph/index.js

@@ -0,0 +1,109 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.evidenceGraphDescription = void 0;
+exports.evidenceGraphDescription = [
+    {
+        "displayName": "Operation",
+        "name": "operation",
+        "type": "options",
+        "noDataExpression": true,
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Evidence Graph"
+                ]
+            }
+        },
+        "options": [
+            {
+                "name": "Get Evidence Graph Object",
+                "value": "Get Evidence Graph Object",
+                "action": "Returns evidence graph object for a given association",
+                "description": "Note that every association is assumed to have a unique ID",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/evidence/graph/{{$parameter[\"id\"]}}"
+                    }
+                }
+            },
+            {
+                "name": "Get Evidence Graph Table",
+                "value": "Get Evidence Graph Table",
+                "action": "Returns evidence as a association_results object given an association",
+                "description": "Note that every association is assumed to have a unique ID",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/evidence/graph/{{$parameter[\"id\"]}}/table"
+                    }
+                }
+            }
+        ],
+        "default": ""
+    },
+    {
+        "displayName": "GET /evidence/graph/{id}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Evidence Graph"
+                ],
+                "operation": [
+                    "Get Evidence Graph Object"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /evidence/graph/{id}/table",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Evidence Graph"
+                ],
+                "operation": [
+                    "Get Evidence Graph Table"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Is Publication",
+        "name": "is_publication",
+        "description": "If true, considers dc:source as edge",
+        "default": false,
+        "type": "boolean",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "is_publication",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Evidence Graph"
+                ],
+                "operation": [
+                    "Get Evidence Graph Table"
+                ]
+            }
+        }
+    },
+];
+//# sourceMappingURL=index.js.map

package/dist/nodes/Monarchinitiative/resources/evidence-graph/index.js.map

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package/dist/nodes/Monarchinitiative/resources/genome-features/index.d.ts

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+import type { INodeProperties } from 'n8n-workflow';
+export declare const genomeFeaturesDescription: INodeProperties[];

package/dist/nodes/Monarchinitiative/resources/genome-features/index.js

@@ -0,0 +1,53 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.genomeFeaturesDescription = void 0;
+exports.genomeFeaturesDescription = [
+    {
+        "displayName": "Operation",
+        "name": "operation",
+        "type": "options",
+        "noDataExpression": true,
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Genome Features"
+                ]
+            }
+        },
+        "options": [
+            {
+                "name": "Get Features Within Resource",
+                "value": "Get Features Within Resource",
+                "action": "Returns list of matches",
+                "description": "Returns list of matches",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/genome/features/within/{{$parameter[\"build\"]}}/{{$parameter[\"reference\"]}}/{{$parameter[\"begin\"]}}/{{$parameter[\"end\"]}}"
+                    }
+                }
+            }
+        ],
+        "default": ""
+    },
+    {
+        "displayName": "GET /genome/features/within/{build}/{reference}/{begin}/{end}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Genome Features"
+                ],
+                "operation": [
+                    "Get Features Within Resource"
+                ]
+            }
+        }
+    },
+];
+//# sourceMappingURL=index.js.map

package/dist/nodes/Monarchinitiative/resources/genome-features/index.js.map

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package/dist/nodes/Monarchinitiative/resources/graph/index.d.ts

@@ -0,0 +1,2 @@
+import type { INodeProperties } from 'n8n-workflow';
+export declare const graphDescription: INodeProperties[];

package/dist/nodes/Monarchinitiative/resources/graph/index.js

@@ -0,0 +1,233 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.graphDescription = void 0;
+exports.graphDescription = [
+    {
+        "displayName": "Operation",
+        "name": "operation",
+        "type": "options",
+        "noDataExpression": true,
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Graph"
+                ]
+            }
+        },
+        "options": [
+            {
+                "name": "Get Edge Resource",
+                "value": "Get Edge Resource",
+                "action": "Returns edges emanating from a given node",
+                "description": "Returns edges emanating from a given node",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/graph/edges/from/{{$parameter[\"id\"]}}"
+                    }
+                }
+            },
+            {
+                "name": "Get Node Resource",
+                "value": "Get Node Resource",
+                "action": "Returns a graph node",
+                "description": "A node is an abstract representation of some kind of entity. The entity may be a physical thing such as a patient,\na molecular entity such as a gene or protein, or a conceptual entity such as a class from an ontology.",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/graph/node/{{$parameter[\"id\"]}}"
+                    }
+                }
+            }
+        ],
+        "default": ""
+    },
+    {
+        "displayName": "GET /graph/edges/from/{id}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Graph"
+                ],
+                "operation": [
+                    "Get Edge Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Depth",
+        "name": "depth",
+        "description": "How far to traverse for neighbors",
+        "default": 1,
+        "type": "number",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "depth",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Graph"
+                ],
+                "operation": [
+                    "Get Edge Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Direction",
+        "name": "direction",
+        "description": "Which direction to traverse (used only if relationship_type is defined)",
+        "default": "BOTH",
+        "type": "options",
+        "options": [
+            {
+                "name": "INCOMING",
+                "value": "INCOMING"
+            },
+            {
+                "name": "OUTGOING",
+                "value": "OUTGOING"
+            },
+            {
+                "name": "BOTH",
+                "value": "BOTH"
+            }
+        ],
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "direction",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Graph"
+                ],
+                "operation": [
+                    "Get Edge Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Relationship Type",
+        "name": "relationship_type",
+        "description": "Relationship type to traverse",
+        "default": "[\n  null\n]",
+        "type": "json",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "relationship_type",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Graph"
+                ],
+                "operation": [
+                    "Get Edge Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Entail",
+        "name": "entail",
+        "description": "Include sub-properties and equivalent properties",
+        "default": false,
+        "type": "boolean",
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "entail",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Graph"
+                ],
+                "operation": [
+                    "Get Edge Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "Graph",
+        "name": "graph",
+        "description": "Which monarch graph to query",
+        "default": "data",
+        "type": "options",
+        "options": [
+            {
+                "name": "Data",
+                "value": "data"
+            },
+            {
+                "name": "Ontology",
+                "value": "ontology"
+            }
+        ],
+        "routing": {
+            "send": {
+                "type": "query",
+                "property": "graph",
+                "value": "={{ $value }}",
+                "propertyInDotNotation": false
+            }
+        },
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Graph"
+                ],
+                "operation": [
+                    "Get Edge Resource"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /graph/node/{id}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Graph"
+                ],
+                "operation": [
+                    "Get Node Resource"
+                ]
+            }
+        }
+    },
+];
+//# sourceMappingURL=index.js.map

package/dist/nodes/Monarchinitiative/resources/graph/index.js.map

@@ -0,0 +1 @@
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package/dist/nodes/Monarchinitiative/resources/identifier-mapper/index.d.ts

@@ -0,0 +1,2 @@
+import type { INodeProperties } from 'n8n-workflow';
+export declare const identifierMapperDescription: INodeProperties[];

package/dist/nodes/Monarchinitiative/resources/identifier-mapper/index.js

@@ -0,0 +1,53 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.identifierMapperDescription = void 0;
+exports.identifierMapperDescription = [
+    {
+        "displayName": "Operation",
+        "name": "operation",
+        "type": "options",
+        "noDataExpression": true,
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Identifier Mapper"
+                ]
+            }
+        },
+        "options": [
+            {
+                "name": "Get Identifier Mapper",
+                "value": "Get Identifier Mapper",
+                "action": "TODO maps a list of identifiers from a source to a target",
+                "description": "TODO maps a list of identifiers from a source to a target",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/identifier/mapper/{{$parameter[\"source\"]}}/{{$parameter[\"target\"]}}/"
+                    }
+                }
+            }
+        ],
+        "default": ""
+    },
+    {
+        "displayName": "GET /identifier/mapper/{source}/{target}/",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Identifier Mapper"
+                ],
+                "operation": [
+                    "Get Identifier Mapper"
+                ]
+            }
+        }
+    },
+];
+//# sourceMappingURL=index.js.map

package/dist/nodes/Monarchinitiative/resources/identifier-mapper/index.js.map

@@ -0,0 +1 @@
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package/dist/nodes/Monarchinitiative/resources/identifier-prefixes/index.d.ts

@@ -0,0 +1,2 @@
+import type { INodeProperties } from 'n8n-workflow';
+export declare const identifierPrefixesDescription: INodeProperties[];

package/dist/nodes/Monarchinitiative/resources/identifier-prefixes/index.js

@@ -0,0 +1,115 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.identifierPrefixesDescription = void 0;
+exports.identifierPrefixesDescription = [
+    {
+        "displayName": "Operation",
+        "name": "operation",
+        "type": "options",
+        "noDataExpression": true,
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Identifier Prefixes"
+                ]
+            }
+        },
+        "options": [
+            {
+                "name": "Get Prefix Collection",
+                "value": "Get Prefix Collection",
+                "action": "Returns list of prefixes",
+                "description": "Returns list of prefixes",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/identifier/prefixes/"
+                    }
+                }
+            },
+            {
+                "name": "Get Prefix Contract",
+                "value": "Get Prefix Contract",
+                "action": "Returns contracted URI",
+                "description": "Returns contracted URI",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/identifier/prefixes/contract/{{$parameter[\"uri\"]}}"
+                    }
+                }
+            },
+            {
+                "name": "Get Prefix Expand",
+                "value": "Get Prefix Expand",
+                "action": "Returns expanded URI",
+                "description": "Returns expanded URI",
+                "routing": {
+                    "request": {
+                        "method": "GET",
+                        "url": "=/identifier/prefixes/expand/{{$parameter[\"id\"]}}"
+                    }
+                }
+            }
+        ],
+        "default": ""
+    },
+    {
+        "displayName": "GET /identifier/prefixes/",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Identifier Prefixes"
+                ],
+                "operation": [
+                    "Get Prefix Collection"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /identifier/prefixes/contract/{uri}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Identifier Prefixes"
+                ],
+                "operation": [
+                    "Get Prefix Contract"
+                ]
+            }
+        }
+    },
+    {
+        "displayName": "GET /identifier/prefixes/expand/{id}",
+        "name": "operation",
+        "type": "notice",
+        "typeOptions": {
+            "theme": "info"
+        },
+        "default": "",
+        "displayOptions": {
+            "show": {
+                "resource": [
+                    "Identifier Prefixes"
+                ],
+                "operation": [
+                    "Get Prefix Expand"
+                ]
+            }
+        }
+    },
+];
+//# sourceMappingURL=index.js.map

package/dist/nodes/Monarchinitiative/resources/identifier-prefixes/index.js.map

@@ -0,0 +1 @@
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package/dist/nodes/Monarchinitiative/resources/index.d.ts

@@ -0,0 +1,26 @@
+export { bioentityDescription } from './bioentity';
+export { associationDescription } from './association';
+export { camDescription } from './cam';
+export { bioentitysetDescription } from './bioentityset';
+export { bioentitysetHomologsDescription } from './bioentityset-homologs';
+export { bioentitysetSlimmerDescription } from './bioentityset-slimmer';
+export { evidenceGraphDescription } from './evidence-graph';
+export { genomeFeaturesDescription } from './genome-features';
+export { graphDescription } from './graph';
+export { identifierMapperDescription } from './identifier-mapper';
+export { identifierPrefixesDescription } from './identifier-prefixes';
+export { martDescription } from './mart';
+export { nlpAnnotateDescription } from './nlp-annotate';
+export { ontolDescription } from './ontol';
+export { ontolLabelerDescription } from './ontol-labeler';
+export { ontolIdentifierDescription } from './ontol-identifier';
+export { ontologyDescription } from './ontology';
+export { owlOntologyDescription } from './owl-ontology';
+export { pairSimDescription } from './pair-sim';
+export { individualDescription } from './individual';
+export { relationUsageDescription } from './relation-usage';
+export { searchDescription } from './search';
+export { variationSetDescription } from './variation-set';
+export { simDescription } from './sim';
+export { mmeDescription } from './mme';
+export { metadataDescription } from './metadata';