@fideus-labs/ngff-zarr 0.16.0 → 0.18.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/browser-mod.d.ts +5 -5
- package/esm/browser-mod.d.ts.map +1 -1
- package/esm/browser-mod.js +4 -4
- package/esm/browser-mod.js.map +1 -1
- package/esm/io/from_ngff_zarr-browser.d.ts +8 -4
- package/esm/io/from_ngff_zarr-browser.d.ts.map +1 -1
- package/esm/io/from_ngff_zarr-browser.js +6 -4
- package/esm/io/from_ngff_zarr-browser.js.map +1 -1
- package/esm/io/from_ngff_zarr.d.ts +7 -3
- package/esm/io/from_ngff_zarr.d.ts.map +1 -1
- package/esm/io/from_ngff_zarr.js +5 -3
- package/esm/io/from_ngff_zarr.js.map +1 -1
- package/esm/io/to_ngff_zarr-browser.d.ts +22 -7
- package/esm/io/to_ngff_zarr-browser.d.ts.map +1 -1
- package/esm/io/to_ngff_zarr-browser.js +14 -9
- package/esm/io/to_ngff_zarr-browser.js.map +1 -1
- package/esm/io/to_ngff_zarr.d.ts +33 -16
- package/esm/io/to_ngff_zarr.d.ts.map +1 -1
- package/esm/io/to_ngff_zarr.js +33 -26
- package/esm/io/to_ngff_zarr.js.map +1 -1
- package/esm/io/to_ngff_zarr_ozx_common.d.ts +8 -8
- package/esm/io/to_ngff_zarr_ozx_common.d.ts.map +1 -1
- package/esm/io/to_ngff_zarr_ozx_common.js +5 -5
- package/esm/io/to_ngff_zarr_ozx_common.js.map +1 -1
- package/esm/mod.d.ts +3 -3
- package/esm/mod.d.ts.map +1 -1
- package/esm/mod.js +2 -2
- package/esm/mod.js.map +1 -1
- package/esm/process/to_multiscales-browser.d.ts +3 -3
- package/esm/process/to_multiscales-browser.d.ts.map +1 -1
- package/esm/process/to_multiscales-browser.js +1 -1
- package/esm/process/to_multiscales-node.d.ts +3 -3
- package/esm/process/to_multiscales-node.d.ts.map +1 -1
- package/esm/process/to_multiscales-node.js +1 -1
- package/esm/process/to_multiscales-shared.d.ts +3 -3
- package/esm/process/to_multiscales-shared.d.ts.map +1 -1
- package/esm/process/to_multiscales-shared.js +3 -3
- package/esm/process/to_multiscales-shared.js.map +1 -1
- package/esm/schemas/multiscales.d.ts +2 -1
- package/esm/schemas/multiscales.d.ts.map +1 -1
- package/esm/schemas/multiscales.js +3 -1
- package/esm/schemas/multiscales.js.map +1 -1
- package/esm/types/hcs.d.ts +3 -3
- package/esm/types/hcs.d.ts.map +1 -1
- package/esm/types/hcs.js +3 -3
- package/esm/types/hcs.js.map +1 -1
- package/esm/types/multiscales.d.ts +6 -3
- package/esm/types/multiscales.d.ts.map +1 -1
- package/esm/types/multiscales.js +3 -2
- package/esm/types/multiscales.js.map +1 -1
- package/esm/utils/codecs.d.ts +27 -0
- package/esm/utils/codecs.d.ts.map +1 -1
- package/esm/utils/codecs.js +84 -0
- package/esm/utils/codecs.js.map +1 -1
- package/esm/utils/compute_omero.d.ts +4 -4
- package/esm/utils/compute_omero.d.ts.map +1 -1
- package/esm/utils/compute_omero.js +3 -3
- package/esm/utils/compute_omero.js.map +1 -1
- package/esm/utils/factory.d.ts +3 -2
- package/esm/utils/factory.d.ts.map +1 -1
- package/esm/utils/factory.js +5 -3
- package/esm/utils/factory.js.map +1 -1
- package/package.json +1 -1
package/esm/types/hcs.d.ts.map
CHANGED
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@@ -1 +1 @@
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{"version":3,"file":"hcs.d.ts","sourceRoot":"","sources":["../../src/types/hcs.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,
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{"version":3,"file":"hcs.d.ts","sourceRoot":"","sources":["../../src/types/hcs.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACxD,OAAO,KAAK,EACV,gBAAgB,EAChB,WAAW,EACX,QAAQ,EACR,SAAS,EACT,SAAS,EACV,MAAM,qBAAqB,CAAC;AAE7B,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,qBAAa,QAAQ,CAAC,CAAC,EAAE,CAAC;IACxB,OAAO,CAAC,KAAK,CAAY;IACzB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;gBAErB,OAAO,EAAE,eAAe;IAKpC,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,GAAG,SAAS;IAU1B,GAAG,CAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,GAAG,IAAI;IAc3B,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,OAAO;IAIpB,KAAK,IAAI,IAAI;CAGd;AAED,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,WAAW,EAAE,CAAC;IACvB,IAAI,EAAE,QAAQ,EAAE,CAAC;IACjB,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,YAAY,CAAC,EAAE,gBAAgB,EAAE,GAAG,SAAS,CAAC;IAC9C,WAAW,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACjC,IAAI,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CAC3B;AAED,MAAM,WAAW,YAAY;IAC3B,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC;IACvB,QAAQ,EAAE,aAAa,CAAC;IACxB,aAAa,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACnC,cAAc,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CACrC;AAED,MAAM,WAAW,cAAc;IAC7B,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC;IACvB,QAAQ,EAAE,MAAM,CAAC;IACjB,aAAa,EAAE,SAAS,CAAC;IACzB,iBAAiB,EAAE,YAAY,CAAC;IAChC,cAAc,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CACrC;AAED,qBAAa,OAAO;IAClB,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAkB;IACxC,SAAgB,IAAI,EAAE,MAAM,CAAC;IAC7B,SAAgB,aAAa,EAAE,SAAS,CAAC;IACzC,SAAgB,QAAQ,EAAE,YAAY,CAAC;IACvC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAoC;gBAEhD,OAAO,EAAE,cAAc;IAenC,IAAI,QAAQ,IAAI,MAAM,CAErB;IAED,IAAI,WAAW,IAAI,MAAM,CAExB;IAED,IAAI,MAAM,IAAI,SAAS,EAAE,CAExB;IAEK,QAAQ,CAAC,UAAU,GAAE,MAAU,GAAG,OAAO,CAAC,eAAe,GAAG,IAAI,CAAC;IAqCvE,qBAAqB,CACnB,aAAa,EAAE,MAAM,EACrB,UAAU,GAAE,MAAU,GACrB,OAAO,CAAC,eAAe,GAAG,IAAI,CAAC;IAiBlC,MAAM,CAAC,SAAS,CACd,KAAK,EAAE,MAAM,GAAG,MAAM,EACtB,QAAQ,EAAE,MAAM,EAChB,YAAY,EAAE,SAAS,EACvB,cAAc,CAAC,EAAE,MAAM,GAAG,SAAS,GAClC,OAAO;CAkBX;AAED,qBAAa,QAAQ;IACnB,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAkB;IACxC,SAAgB,QAAQ,EAAE,aAAa,CAAC;IACxC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAA4B;IACnD,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAqB;gBAExC,OAAO,EAAE,eAAe;IAmBpC,IAAI,IAAI,IAAI,MAAM,GAAG,SAAS,CAE7B;IAED,IAAI,IAAI,IAAI,QAAQ,EAAE,CAErB;IAED,IAAI,OAAO,IAAI,WAAW,EAAE,CAE3B;IAED,IAAI,KAAK,IAAI,SAAS,EAAE,CAEvB;IAED,IAAI,YAAY,IAAI,gBAAgB,EAAE,GAAG,SAAS,CAIjD;IAED,IAAI,UAAU,IAAI,MAAM,GAAG,SAAS,CAEnC;IAED,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;IA+B5D,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;CAcxE"}
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package/esm/types/hcs.js
CHANGED
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@@ -74,8 +74,8 @@ export class HCSWell {
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if (cached) {
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return cached;
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}
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// Load the image using
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const {
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// Load the image using fromOmeZarr
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const { fromOmeZarr } = await import("../io/from_ngff_zarr.js");
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let fullImagePath;
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if (typeof this.store === "string") {
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// If store is a path string, append the image path
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@@ -87,7 +87,7 @@ export class HCSWell {
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throw new Error("Non-string store types not yet implemented for HCS");
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}
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try {
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const multiscales = await
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const multiscales = await fromOmeZarr(fullImagePath);
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this._images.set(imagePath, multiscales);
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return multiscales;
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}
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package/esm/types/hcs.js.map
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+
{"version":3,"file":"hcs.js","sourceRoot":"","sources":["../../src/types/hcs.ts"],"names":[],"mappings":"AAeA,MAAM,OAAO,QAAQ;IACX,KAAK,CAAY;IACR,OAAO,CAAS;IAEjC,YAAY,OAAwB;QAClC,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,EAAE,CAAC;QACvB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC;IACjC,CAAC;IAED,GAAG,CAAC,GAAM;QACR,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QAClC,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YACxB,mCAAmC;YACnC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YACvB,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;QAC7B,CAAC;QACD,OAAO,KAAK,CAAC;IACf,CAAC;IAED,GAAG,CAAC,GAAM,EAAE,KAAQ;QAClB,IAAI,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;YACxB,uBAAuB;YACvB,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QACzB,CAAC;aAAM,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAC3C,kCAAkC;YAClC,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC;YAChD,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;gBAC3B,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;YAC9B,CAAC;QACH,CAAC;QACD,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;IAC7B,CAAC;IAED,GAAG,CAAC,GAAM;QACR,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IAC7B,CAAC;IAED,KAAK;QACH,IAAI,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC;IACrB,CAAC;CACF;AAgCD,MAAM,OAAO,OAAO;IACD,KAAK,CAAkB;IACxB,IAAI,CAAS;IACb,aAAa,CAAY;IACzB,QAAQ,CAAe;IACtB,OAAO,CAAoC;IAE5D,YAAY,OAAuB;QACjC,IAAI,CAAC,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC;QAC3B,IAAI,CAAC,IAAI,GAAG,OAAO,CAAC,QAAQ,CAAC;QAC7B,IAAI,CAAC,aAAa,GAAG,EAAE,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;QAClD,IAAI,CAAC,QAAQ,GAAG;YACd,MAAM,EAAE,CAAC,GAAG,OAAO,CAAC,iBAAiB,CAAC,MAAM,CAAC;YAC7C,OAAO,EAAE,OAAO,CAAC,iBAAiB,CAAC,OAAO;SAC3C,CAAC;QAEF,MAAM,cAAc,GAAG,OAAO,CAAC,cAAc,IAAI,GAAG,CAAC;QACrD,IAAI,CAAC,OAAO,GAAG,IAAI,QAAQ,CAA0B;YACnD,OAAO,EAAE,cAAc;SACxB,CAAC,CAAC;IACL,CAAC;IAED,IAAI,QAAQ;QACV,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC;IACrC,CAAC;IAED,IAAI,WAAW;QACb,OAAO,IAAI,CAAC,aAAa,CAAC,WAAW,CAAC;IACxC,CAAC;IAED,IAAI,MAAM;QACR,OAAO,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;IACnC,CAAC;IAED,KAAK,CAAC,QAAQ,CAAC,aAAqB,CAAC;QACnC,IAAI,UAAU,GAAG,CAAC,IAAI,UAAU,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC;YAChE,OAAO,IAAI,CAAC;QACd,CAAC;QAED,MAAM,SAAS,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;QACnD,MAAM,SAAS,GAAG,GAAG,IAAI,CAAC,IAAI,IAAI,SAAS,CAAC,IAAI,EAAE,CAAC;QAEnD,oBAAoB;QACpB,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;QAC3C,IAAI,MAAM,EAAE,CAAC;YACX,OAAO,MAAM,CAAC;QAChB,CAAC;QAED,mCAAmC;QACnC,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,MAAM,CAAC,yBAAyB,CAAC,CAAC;QAEhE,IAAI,aAAqB,CAAC;QAC1B,IAAI,OAAO,IAAI,CAAC,KAAK,KAAK,QAAQ,EAAE,CAAC;YACnC,mDAAmD;YACnD,aAAa,GAAG,GAAG,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,IAAI,IAAI,SAAS,CAAC,IAAI,EAAE,CAAC;QACjE,CAAC;aAAM,CAAC;YACN,uDAAuD;YACvD,iEAAiE;YACjE,MAAM,IAAI,KAAK,CAAC,oDAAoD,CAAC,CAAC;QACxE,CAAC;QAED,IAAI,CAAC;YACH,MAAM,WAAW,GAAG,MAAM,WAAW,CAAC,aAAa,CAAC,CAAC;YACrD,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,SAAS,EAAE,WAAW,CAAC,CAAC;YACzC,OAAO,WAAW,CAAC;QACrB,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,OAAO,CAAC,KAAK,CAAC,2BAA2B,aAAa,GAAG,EAAE,KAAK,CAAC,CAAC;YAClE,OAAO,IAAI,CAAC;QACd,CAAC;IACH,CAAC;IAED,qBAAqB,CACnB,aAAqB,EACrB,aAAqB,CAAC;QAEtB,4CAA4C;QAC5C,MAAM,iBAAiB,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,MAAM,CACnD,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,WAAW,KAAK,aAAa,CAC3C,CAAC;QAEF,IAAI,UAAU,GAAG,CAAC,IAAI,UAAU,IAAI,iBAAiB,CAAC,MAAM,EAAE,CAAC;YAC7D,OAAO,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QAC/B,CAAC;QAED,+CAA+C;QAC/C,MAAM,WAAW,GAAG,iBAAiB,CAAC,UAAU,CAAC,CAAC;QAClD,MAAM,WAAW,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;QAE9D,OAAO,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC;IACpC,CAAC;IAED,MAAM,CAAC,SAAS,CACd,KAAsB,EACtB,QAAgB,EAChB,YAAuB,EACvB,cAAmC;QAEnC,oFAAoF;QACpF,MAAM,iBAAiB,GAAiB;YACtC,MAAM,EAAE;gBACN,EAAE,IAAI,EAAE,GAAG,EAAE,WAAW,EAAE,CAAC,EAAE;gBAC7B,EAAE,IAAI,EAAE,GAAG,EAAE,WAAW,EAAE,CAAC,EAAE;aAC9B;YACD,OAAO,EAAE,KAAK;SACf,CAAC;QAEF,OAAO,IAAI,OAAO,CAAC;YACjB,KAAK;YACL,QAAQ;YACR,aAAa,EAAE,YAAY;YAC3B,iBAAiB;YACjB,cAAc;SACf,CAAC,CAAC;IACL,CAAC;CACF;AAED,MAAM,OAAO,QAAQ;IACF,KAAK,CAAkB;IACxB,QAAQ,CAAgB;IACvB,MAAM,CAA4B;IAClC,cAAc,CAAqB;IAEpD,YAAY,OAAwB;QAClC,IAAI,CAAC,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC;QAC3B,IAAI,CAAC,QAAQ,GAAG;YACd,OAAO,EAAE,CAAC,GAAG,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAC;YACtC,IAAI,EAAE,CAAC,GAAG,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC;YAChC,KAAK,EAAE,CAAC,GAAG,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;YAClC,OAAO,EAAE,OAAO,CAAC,QAAQ,CAAC,OAAO;YACjC,YAAY,EAAE,OAAO,CAAC,QAAQ,CAAC,YAAY;gBACzC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAC;gBACpC,CAAC,CAAC,SAAS;YACb,WAAW,EAAE,OAAO,CAAC,QAAQ,CAAC,WAAW;YACzC,IAAI,EAAE,OAAO,CAAC,QAAQ,CAAC,IAAI;SAC5B,CAAC;QACF,IAAI,CAAC,cAAc,GAAG,OAAO,CAAC,cAAc,CAAC;QAE7C,MAAM,aAAa,GAAG,OAAO,CAAC,aAAa,IAAI,GAAG,CAAC;QACnD,IAAI,CAAC,MAAM,GAAG,IAAI,QAAQ,CAAkB,EAAE,OAAO,EAAE,aAAa,EAAE,CAAC,CAAC;IAC1E,CAAC;IAED,IAAI,IAAI;QACN,OAAO,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC;IAC5B,CAAC;IAED,IAAI,IAAI;QACN,OAAO,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;IACjC,CAAC;IAED,IAAI,OAAO;QACT,OAAO,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;IACpC,CAAC;IAED,IAAI,KAAK;QACP,OAAO,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;IAClC,CAAC;IAED,IAAI,YAAY;QACd,OAAO,IAAI,CAAC,QAAQ,CAAC,YAAY;YAC/B,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC;YACjC,CAAC,CAAC,SAAS,CAAC;IAChB,CAAC;IAED,IAAI,UAAU;QACZ,OAAO,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC;IACnC,CAAC;IAED,OAAO,CAAC,OAAe,EAAE,UAAkB;QACzC,MAAM,QAAQ,GAAG,GAAG,OAAO,IAAI,UAAU,EAAE,CAAC;QAE5C,mCAAmC;QACnC,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAC;QAC5E,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,OAAO,IAAI,CAAC;QACd,CAAC;QAED,oBAAoB;QACpB,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;QACzC,IAAI,MAAM,EAAE,CAAC;YACX,OAAO,MAAM,CAAC;QAChB,CAAC;QAED,gBAAgB;QAChB,IAAI,CAAC;YACH,MAAM,IAAI,GAAG,OAAO,CAAC,SAAS,CAC5B,IAAI,CAAC,KAAK,EACV,QAAQ,EACR,QAAQ,EACR,IAAI,CAAC,cAAc,CACpB,CAAC;YACF,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC;YAChC,OAAO,IAAI,CAAC;QACd,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,OAAO,CAAC,KAAK,CAAC,0BAA0B,QAAQ,GAAG,EAAE,KAAK,CAAC,CAAC;YAC5D,OAAO,IAAI,CAAC;QACd,CAAC;IACH,CAAC;IAED,gBAAgB,CAAC,QAAgB,EAAE,WAAmB;QACpD,IACE,QAAQ,GAAG,CAAC;YACZ,QAAQ,IAAI,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM;YACrC,WAAW,GAAG,CAAC;YACf,WAAW,IAAI,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,EAC3C,CAAC;YACD,OAAO,IAAI,CAAC;QACd,CAAC;QAED,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,IAAI,CAAC;QAClD,MAAM,UAAU,GAAG,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC;QAC3D,OAAO,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC;IAC3C,CAAC;CACF"}
|
|
@@ -2,20 +2,23 @@ import type { NgffImage } from "./ngff_image.js";
|
|
|
2
2
|
import type { Metadata } from "./zarr_metadata.js";
|
|
3
3
|
import type { Methods } from "./methods.js";
|
|
4
4
|
export type ChunkSpec = number | number[] | number[][] | Record<string, number | number[] | undefined>;
|
|
5
|
-
export interface
|
|
5
|
+
export interface NgffMultiscalesOptions {
|
|
6
6
|
images: NgffImage[];
|
|
7
7
|
metadata: Metadata;
|
|
8
8
|
scaleFactors: (Record<string, number> | number)[] | undefined;
|
|
9
9
|
method: Methods | undefined;
|
|
10
10
|
chunks: ChunkSpec | undefined;
|
|
11
11
|
}
|
|
12
|
-
export declare class
|
|
12
|
+
export declare class NgffMultiscales {
|
|
13
13
|
readonly images: NgffImage[];
|
|
14
14
|
readonly metadata: Metadata;
|
|
15
15
|
readonly scaleFactors: (Record<string, number> | number)[] | undefined;
|
|
16
16
|
readonly method: Methods | undefined;
|
|
17
17
|
readonly chunks: ChunkSpec | undefined;
|
|
18
|
-
constructor(options:
|
|
18
|
+
constructor(options: NgffMultiscalesOptions);
|
|
19
19
|
toString(): string;
|
|
20
20
|
}
|
|
21
|
+
export type MultiscalesOptions = NgffMultiscalesOptions;
|
|
22
|
+
export type Multiscales = NgffMultiscales;
|
|
23
|
+
export declare const Multiscales: typeof NgffMultiscales;
|
|
21
24
|
//# sourceMappingURL=multiscales.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"multiscales.d.ts","sourceRoot":"","sources":["../../src/types/multiscales.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AACnD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAE5C,MAAM,MAAM,SAAS,GACjB,MAAM,GACN,MAAM,EAAE,GACR,MAAM,EAAE,EAAE,GACV,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,SAAS,CAAC,CAAC;AAElD,MAAM,WAAW,
|
|
1
|
+
{"version":3,"file":"multiscales.d.ts","sourceRoot":"","sources":["../../src/types/multiscales.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AACnD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAE5C,MAAM,MAAM,SAAS,GACjB,MAAM,GACN,MAAM,EAAE,GACR,MAAM,EAAE,EAAE,GACV,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,SAAS,CAAC,CAAC;AAElD,MAAM,WAAW,sBAAsB;IACrC,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,QAAQ,EAAE,QAAQ,CAAC;IACnB,YAAY,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,GAAG,SAAS,CAAC;IAC9D,MAAM,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,MAAM,EAAE,SAAS,GAAG,SAAS,CAAC;CAC/B;AAED,qBAAa,eAAe;IAC1B,SAAgB,MAAM,EAAE,SAAS,EAAE,CAAC;IACpC,SAAgB,QAAQ,EAAE,QAAQ,CAAC;IACnC,SAAgB,YAAY,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,GAAG,SAAS,CAAC;IAC9E,SAAgB,MAAM,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5C,SAAgB,MAAM,EAAE,SAAS,GAAG,SAAS,CAAC;gBAElC,OAAO,EAAE,sBAAsB;IAU3C,QAAQ,IAAI,MAAM;CAwBnB;AAGD,MAAM,MAAM,kBAAkB,GAAG,sBAAsB,CAAC;AACxD,MAAM,MAAM,WAAW,GAAG,eAAe,CAAC;AAC1C,eAAO,MAAM,WAAW,wBAAkB,CAAC"}
|
package/esm/types/multiscales.js
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
export class
|
|
1
|
+
export class NgffMultiscales {
|
|
2
2
|
images;
|
|
3
3
|
metadata;
|
|
4
4
|
scaleFactors;
|
|
@@ -21,7 +21,7 @@ export class Multiscales {
|
|
|
21
21
|
.split("\n")
|
|
22
22
|
.map((line) => ` ${line}`)
|
|
23
23
|
.join("\n");
|
|
24
|
-
return `
|
|
24
|
+
return `NgffMultiscales(
|
|
25
25
|
images=[
|
|
26
26
|
${imagesStr}
|
|
27
27
|
],
|
|
@@ -32,4 +32,5 @@ ${imagesStr}
|
|
|
32
32
|
)`;
|
|
33
33
|
}
|
|
34
34
|
}
|
|
35
|
+
export const Multiscales = NgffMultiscales;
|
|
35
36
|
//# sourceMappingURL=multiscales.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"multiscales.js","sourceRoot":"","sources":["../../src/types/multiscales.ts"],"names":[],"mappings":"AAoBA,MAAM,OAAO,
|
|
1
|
+
{"version":3,"file":"multiscales.js","sourceRoot":"","sources":["../../src/types/multiscales.ts"],"names":[],"mappings":"AAoBA,MAAM,OAAO,eAAe;IACV,MAAM,CAAc;IACpB,QAAQ,CAAW;IACnB,YAAY,CAAkD;IAC9D,MAAM,CAAsB;IAC5B,MAAM,CAAwB;IAE9C,YAAY,OAA+B;QACzC,IAAI,CAAC,MAAM,GAAG,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;QAClC,IAAI,CAAC,QAAQ,GAAG,EAAE,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC;QACxC,IAAI,CAAC,YAAY,GAAG,OAAO,CAAC,YAAY;YACtC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,YAAY,CAAC;YAC3B,CAAC,CAAC,SAAS,CAAC;QACd,IAAI,CAAC,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;QAC7B,IAAI,CAAC,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAC/B,CAAC;IAED,QAAQ;QACN,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM;aAC1B,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,EAAE,EAAE,CACf,WAAW,GAAG,CAAC,QAAQ,EAAE,CAAC,OAAO,CAAC,KAAK,EAAE,YAAY,CAAC,EAAE,CACzD;aACA,IAAI,CAAC,KAAK,CAAC,CAAC;QAEf,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC;aACvD,KAAK,CAAC,IAAI,CAAC;aACX,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,WAAW,IAAI,EAAE,CAAC;aAChC,IAAI,CAAC,IAAI,CAAC,CAAC;QAEd,OAAO;;EAET,SAAS;;eAEI,WAAW;oBACN,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,YAAY,CAAC;aAE/C,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,WAAW,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,EAAE,CAAC,CAAC,CAAC,WACzD;aACS,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC;EACtC,CAAC;IACD,CAAC;CACF;AAKD,MAAM,CAAC,MAAM,WAAW,GAAG,eAAe,CAAC"}
|
package/esm/utils/codecs.d.ts
CHANGED
|
@@ -43,4 +43,31 @@ export declare function defaultCodecs(dataType: string): ZarrCodec[];
|
|
|
43
43
|
* blosc compress/decompress round-trip would be wasted work.
|
|
44
44
|
*/
|
|
45
45
|
export declare function bytesOnlyCodecs(): ZarrCodec[];
|
|
46
|
+
/**
|
|
47
|
+
* Supported codec name strings accepted by {@link codecFromName}.
|
|
48
|
+
*
|
|
49
|
+
* Includes bare {@link "blosc"} (defaults to lz4 compression) as well
|
|
50
|
+
* as prefixed variants like {@link "blosc:zstd"}.
|
|
51
|
+
*/
|
|
52
|
+
export declare const AVAILABLE_CODECS: readonly ["none", "gzip", "lz4", "zstd", "blosc", "blosc:blosclz", "blosc:lz4", "blosc:lz4hc", "blosc:snappy", "blosc:zlib", "blosc:zstd"];
|
|
53
|
+
/** Union of recognised codec name strings. */
|
|
54
|
+
export type CodecName = (typeof AVAILABLE_CODECS)[number];
|
|
55
|
+
/**
|
|
56
|
+
* Build a zarr v3 codec pipeline from a human-readable codec name.
|
|
57
|
+
*
|
|
58
|
+
* This is the TypeScript equivalent of the Python
|
|
59
|
+
* ``ngff_zarr.codecs.codec_from_name()`` helper. Unlike the Python
|
|
60
|
+
* version (which returns a single *numcodecs* object), this returns a
|
|
61
|
+
* complete ``ZarrCodec[]`` pipeline including the required ``bytes``
|
|
62
|
+
* array-to-bytes codec.
|
|
63
|
+
*
|
|
64
|
+
* @param name - One of the strings in {@link AVAILABLE_CODECS}.
|
|
65
|
+
* @param dataType - Zarr v3 data type string (e.g. ``"float32"``),
|
|
66
|
+
* needed to set the blosc ``typesize`` field.
|
|
67
|
+
* @param level - Optional compression level. When omitted a sensible
|
|
68
|
+
* default is used (gzip=6, zstd=3, blosc=5).
|
|
69
|
+
* @returns A codec pipeline suitable for ``zarr.create()``.
|
|
70
|
+
* @throws {Error} If *name* is not recognised.
|
|
71
|
+
*/
|
|
72
|
+
export declare function codecFromName(name: string, dataType: string, level?: number): ZarrCodec[];
|
|
46
73
|
//# sourceMappingURL=codecs.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"codecs.d.ts","sourceRoot":"","sources":["../../src/utils/codecs.ts"],"names":[],"mappings":"AAGA;;;;;GAKG;AACH,MAAM,MAAM,SAAS,GAAG;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACxC,CAAC;AAEF;;;;;;;GAOG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAgBtD;AAED;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,EAAE,CAc3D;AAED;;;;;;;;GAQG;AACH,wBAAgB,eAAe,IAAI,SAAS,EAAE,CAE7C"}
|
|
1
|
+
{"version":3,"file":"codecs.d.ts","sourceRoot":"","sources":["../../src/utils/codecs.ts"],"names":[],"mappings":"AAGA;;;;;GAKG;AACH,MAAM,MAAM,SAAS,GAAG;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACxC,CAAC;AAEF;;;;;;;GAOG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAgBtD;AAED;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,EAAE,CAc3D;AAED;;;;;;;;GAQG;AACH,wBAAgB,eAAe,IAAI,SAAS,EAAE,CAE7C;AAED;;;;;GAKG;AACH,eAAO,MAAM,gBAAgB,4IAYnB,CAAC;AAEX,8CAA8C;AAC9C,MAAM,MAAM,SAAS,GAAG,CAAC,OAAO,gBAAgB,CAAC,CAAC,MAAM,CAAC,CAAC;AAE1D;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,aAAa,CAC3B,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,EAChB,KAAK,CAAC,EAAE,MAAM,GACb,SAAS,EAAE,CA0Db"}
|
package/esm/utils/codecs.js
CHANGED
|
@@ -67,4 +67,88 @@ export function defaultCodecs(dataType) {
|
|
|
67
67
|
export function bytesOnlyCodecs() {
|
|
68
68
|
return [{ name: "bytes", configuration: { endian: "little" } }];
|
|
69
69
|
}
|
|
70
|
+
/**
|
|
71
|
+
* Supported codec name strings accepted by {@link codecFromName}.
|
|
72
|
+
*
|
|
73
|
+
* Includes bare {@link "blosc"} (defaults to lz4 compression) as well
|
|
74
|
+
* as prefixed variants like {@link "blosc:zstd"}.
|
|
75
|
+
*/
|
|
76
|
+
export const AVAILABLE_CODECS = [
|
|
77
|
+
"none",
|
|
78
|
+
"gzip",
|
|
79
|
+
"lz4",
|
|
80
|
+
"zstd",
|
|
81
|
+
"blosc",
|
|
82
|
+
"blosc:blosclz",
|
|
83
|
+
"blosc:lz4",
|
|
84
|
+
"blosc:lz4hc",
|
|
85
|
+
"blosc:snappy",
|
|
86
|
+
"blosc:zlib",
|
|
87
|
+
"blosc:zstd",
|
|
88
|
+
];
|
|
89
|
+
/**
|
|
90
|
+
* Build a zarr v3 codec pipeline from a human-readable codec name.
|
|
91
|
+
*
|
|
92
|
+
* This is the TypeScript equivalent of the Python
|
|
93
|
+
* ``ngff_zarr.codecs.codec_from_name()`` helper. Unlike the Python
|
|
94
|
+
* version (which returns a single *numcodecs* object), this returns a
|
|
95
|
+
* complete ``ZarrCodec[]`` pipeline including the required ``bytes``
|
|
96
|
+
* array-to-bytes codec.
|
|
97
|
+
*
|
|
98
|
+
* @param name - One of the strings in {@link AVAILABLE_CODECS}.
|
|
99
|
+
* @param dataType - Zarr v3 data type string (e.g. ``"float32"``),
|
|
100
|
+
* needed to set the blosc ``typesize`` field.
|
|
101
|
+
* @param level - Optional compression level. When omitted a sensible
|
|
102
|
+
* default is used (gzip=6, zstd=3, blosc=5).
|
|
103
|
+
* @returns A codec pipeline suitable for ``zarr.create()``.
|
|
104
|
+
* @throws {Error} If *name* is not recognised.
|
|
105
|
+
*/
|
|
106
|
+
export function codecFromName(name, dataType, level) {
|
|
107
|
+
const bytes = {
|
|
108
|
+
name: "bytes",
|
|
109
|
+
configuration: { endian: "little" },
|
|
110
|
+
};
|
|
111
|
+
if (name === "none") {
|
|
112
|
+
return [bytes];
|
|
113
|
+
}
|
|
114
|
+
if (name === "gzip") {
|
|
115
|
+
return [bytes, { name: "gzip", configuration: { level: level ?? 6 } }];
|
|
116
|
+
}
|
|
117
|
+
if (name === "zstd") {
|
|
118
|
+
return [bytes, { name: "zstd", configuration: { level: level ?? 3 } }];
|
|
119
|
+
}
|
|
120
|
+
if (name === "lz4") {
|
|
121
|
+
return [bytes, { name: "lz4", configuration: {} }];
|
|
122
|
+
}
|
|
123
|
+
if (name === "blosc" || name.startsWith("blosc:")) {
|
|
124
|
+
let cname;
|
|
125
|
+
if (name === "blosc") {
|
|
126
|
+
// Default blosc variant when none is specified explicitly.
|
|
127
|
+
cname = "lz4";
|
|
128
|
+
}
|
|
129
|
+
else {
|
|
130
|
+
const parts = name.split(":");
|
|
131
|
+
cname = parts[1] ?? "";
|
|
132
|
+
// Reject empty or unknown blosc variants to avoid silently writing
|
|
133
|
+
// unsupported Zarr metadata.
|
|
134
|
+
if (cname === "" || !AVAILABLE_CODECS.includes(name)) {
|
|
135
|
+
throw new Error(`Unknown codec: "${name}". Available: ${AVAILABLE_CODECS.join(", ")}`);
|
|
136
|
+
}
|
|
137
|
+
}
|
|
138
|
+
return [
|
|
139
|
+
bytes,
|
|
140
|
+
{
|
|
141
|
+
name: "blosc",
|
|
142
|
+
configuration: {
|
|
143
|
+
cname,
|
|
144
|
+
clevel: level ?? 5,
|
|
145
|
+
shuffle: "shuffle",
|
|
146
|
+
typesize: typeSizeForDtype(dataType),
|
|
147
|
+
blocksize: 0,
|
|
148
|
+
},
|
|
149
|
+
},
|
|
150
|
+
];
|
|
151
|
+
}
|
|
152
|
+
throw new Error(`Unknown codec: "${name}". Available: ${AVAILABLE_CODECS.join(", ")}`);
|
|
153
|
+
}
|
|
70
154
|
//# sourceMappingURL=codecs.js.map
|
package/esm/utils/codecs.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"codecs.js","sourceRoot":"","sources":["../../src/utils/codecs.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAa/B;;;;;;;GAOG;AACH,MAAM,UAAU,gBAAgB,CAAC,KAAa;IAC5C,MAAM,KAAK,GAA2B;QACpC,IAAI,EAAE,CAAC;QACP,IAAI,EAAE,CAAC;QACP,KAAK,EAAE,CAAC;QACR,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,CAAC;QACT,OAAO,EAAE,CAAC;QACV,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,CAAC;QACT,OAAO,EAAE,CAAC;QACV,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,CAAC;QACT,OAAO,EAAE,CAAC;KACX,CAAC;IACF,OAAO,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;AAC3B,CAAC;AAED;;;;;;;;;;;;;;GAcG;AACH,MAAM,UAAU,aAAa,CAAC,QAAgB;IAC5C,OAAO;QACL,EAAE,IAAI,EAAE,OAAO,EAAE,aAAa,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,EAAE;QACtD;YACE,IAAI,EAAE,OAAO;YACb,aAAa,EAAE;gBACb,KAAK,EAAE,MAAM;gBACb,MAAM,EAAE,CAAC;gBACT,OAAO,EAAE,SAAS;gBAClB,QAAQ,EAAE,gBAAgB,CAAC,QAAQ,CAAC;gBACpC,SAAS,EAAE,CAAC;aACb;SACF;KACF,CAAC;AACJ,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,eAAe;IAC7B,OAAO,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,aAAa,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,EAAE,CAAC,CAAC;AAClE,CAAC"}
|
|
1
|
+
{"version":3,"file":"codecs.js","sourceRoot":"","sources":["../../src/utils/codecs.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAa/B;;;;;;;GAOG;AACH,MAAM,UAAU,gBAAgB,CAAC,KAAa;IAC5C,MAAM,KAAK,GAA2B;QACpC,IAAI,EAAE,CAAC;QACP,IAAI,EAAE,CAAC;QACP,KAAK,EAAE,CAAC;QACR,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,CAAC;QACT,OAAO,EAAE,CAAC;QACV,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,CAAC;QACT,OAAO,EAAE,CAAC;QACV,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,CAAC;QACT,OAAO,EAAE,CAAC;KACX,CAAC;IACF,OAAO,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;AAC3B,CAAC;AAED;;;;;;;;;;;;;;GAcG;AACH,MAAM,UAAU,aAAa,CAAC,QAAgB;IAC5C,OAAO;QACL,EAAE,IAAI,EAAE,OAAO,EAAE,aAAa,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,EAAE;QACtD;YACE,IAAI,EAAE,OAAO;YACb,aAAa,EAAE;gBACb,KAAK,EAAE,MAAM;gBACb,MAAM,EAAE,CAAC;gBACT,OAAO,EAAE,SAAS;gBAClB,QAAQ,EAAE,gBAAgB,CAAC,QAAQ,CAAC;gBACpC,SAAS,EAAE,CAAC;aACb;SACF;KACF,CAAC;AACJ,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,eAAe;IAC7B,OAAO,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,aAAa,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,EAAE,CAAC,CAAC;AAClE,CAAC;AAED;;;;;GAKG;AACH,MAAM,CAAC,MAAM,gBAAgB,GAAG;IAC9B,MAAM;IACN,MAAM;IACN,KAAK;IACL,MAAM;IACN,OAAO;IACP,eAAe;IACf,WAAW;IACX,aAAa;IACb,cAAc;IACd,YAAY;IACZ,YAAY;CACJ,CAAC;AAKX;;;;;;;;;;;;;;;;GAgBG;AACH,MAAM,UAAU,aAAa,CAC3B,IAAY,EACZ,QAAgB,EAChB,KAAc;IAEd,MAAM,KAAK,GAAc;QACvB,IAAI,EAAE,OAAO;QACb,aAAa,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE;KACpC,CAAC;IAEF,IAAI,IAAI,KAAK,MAAM,EAAE,CAAC;QACpB,OAAO,CAAC,KAAK,CAAC,CAAC;IACjB,CAAC;IAED,IAAI,IAAI,KAAK,MAAM,EAAE,CAAC;QACpB,OAAO,CAAC,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,aAAa,EAAE,EAAE,KAAK,EAAE,KAAK,IAAI,CAAC,EAAE,EAAE,CAAC,CAAC;IACzE,CAAC;IAED,IAAI,IAAI,KAAK,MAAM,EAAE,CAAC;QACpB,OAAO,CAAC,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,aAAa,EAAE,EAAE,KAAK,EAAE,KAAK,IAAI,CAAC,EAAE,EAAE,CAAC,CAAC;IACzE,CAAC;IAED,IAAI,IAAI,KAAK,KAAK,EAAE,CAAC;QACnB,OAAO,CAAC,KAAK,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,aAAa,EAAE,EAAE,EAAE,CAAC,CAAC;IACrD,CAAC;IAED,IAAI,IAAI,KAAK,OAAO,IAAI,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;QAClD,IAAI,KAAa,CAAC;QAElB,IAAI,IAAI,KAAK,OAAO,EAAE,CAAC;YACrB,2DAA2D;YAC3D,KAAK,GAAG,KAAK,CAAC;QAChB,CAAC;aAAM,CAAC;YACN,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;YAC9B,KAAK,GAAG,KAAK,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;YAEvB,mEAAmE;YACnE,6BAA6B;YAC7B,IAAI,KAAK,KAAK,EAAE,IAAI,CAAC,gBAAgB,CAAC,QAAQ,CAAC,IAAiB,CAAC,EAAE,CAAC;gBAClE,MAAM,IAAI,KAAK,CACb,mBAAmB,IAAI,iBAAiB,gBAAgB,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CACtE,CAAC;YACJ,CAAC;QACH,CAAC;QACD,OAAO;YACL,KAAK;YACL;gBACE,IAAI,EAAE,OAAO;gBACb,aAAa,EAAE;oBACb,KAAK;oBACL,MAAM,EAAE,KAAK,IAAI,CAAC;oBAClB,OAAO,EAAE,SAAS;oBAClB,QAAQ,EAAE,gBAAgB,CAAC,QAAQ,CAAC;oBACpC,SAAS,EAAE,CAAC;iBACb;aACF;SACF,CAAC;IACJ,CAAC;IAED,MAAM,IAAI,KAAK,CACb,mBAAmB,IAAI,iBAAiB,gBAAgB,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CACtE,CAAC;AACJ,CAAC"}
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import type {
|
|
1
|
+
import type { NgffMultiscales } from "../types/multiscales.js";
|
|
2
2
|
import type { NgffImage } from "../types/ngff_image.js";
|
|
3
3
|
import type { Omero } from "../types/zarr_metadata.js";
|
|
4
4
|
import { type ComputeOmeroFromMultiscalesOptions, type ComputeOmeroOptions } from "./compute_omero-shared.js";
|
|
@@ -21,14 +21,14 @@ export declare function terminateOmeroWorkerPool(): void;
|
|
|
21
21
|
*/
|
|
22
22
|
export declare function computeOmeroFromNgffImage(image: NgffImage, options?: ComputeOmeroOptions): Promise<Omero>;
|
|
23
23
|
/**
|
|
24
|
-
* Compute OMERO metadata from a
|
|
24
|
+
* Compute OMERO metadata from a NgffMultiscales object.
|
|
25
25
|
*
|
|
26
26
|
* This is a convenience function that computes OMERO metadata from the
|
|
27
27
|
* highest resolution image in a multiscales pyramid for accurate statistics.
|
|
28
28
|
*
|
|
29
|
-
* @param multiscales - The
|
|
29
|
+
* @param multiscales - The NgffMultiscales object to compute metadata for
|
|
30
30
|
* @param options - Optional configuration for quantiles, colors, and labels
|
|
31
31
|
* @returns Promise resolving to Omero metadata with computed window parameters
|
|
32
32
|
*/
|
|
33
|
-
export declare function computeOmeroFromMultiscales(multiscales:
|
|
33
|
+
export declare function computeOmeroFromMultiscales(multiscales: NgffMultiscales, options?: ComputeOmeroFromMultiscalesOptions): Promise<Omero>;
|
|
34
34
|
//# sourceMappingURL=compute_omero.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"compute_omero.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero.ts"],"names":[],"mappings":"AAmBA,OAAO,KAAK,EAAE,
|
|
1
|
+
{"version":3,"file":"compute_omero.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero.ts"],"names":[],"mappings":"AAmBA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACxD,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,2BAA2B,CAAC;AACvD,OAAO,EAGL,KAAK,kCAAkC,EACvC,KAAK,mBAAmB,EAOzB,MAAM,2BAA2B,CAAC;AAInC,OAAO,EACL,wBAAwB,EACxB,KAAK,kCAAkC,EACvC,KAAK,mBAAmB,EACxB,cAAc,EACd,gBAAgB,EAChB,cAAc,EACd,oBAAoB,EACpB,aAAa,EACb,iBAAiB,GAClB,MAAM,2BAA2B,CAAC;AAiCnC;;;GAGG;AACH,wBAAgB,wBAAwB,IAAI,IAAI,CAS/C;AA2QD;;;;;;;;;;GAUG;AACH,wBAAsB,yBAAyB,CAC7C,KAAK,EAAE,SAAS,EAChB,OAAO,GAAE,mBAAwB,GAChC,OAAO,CAAC,KAAK,CAAC,CA0KhB;AAMD;;;;;;;;;GASG;AACH,wBAAsB,2BAA2B,CAC/C,WAAW,EAAE,eAAe,EAC5B,OAAO,GAAE,kCAAuC,GAC/C,OAAO,CAAC,KAAK,CAAC,CAuBhB"}
|
|
@@ -408,18 +408,18 @@ export async function computeOmeroFromNgffImage(image, options = {}) {
|
|
|
408
408
|
// Public API: computeOmeroFromMultiscales
|
|
409
409
|
// ---------------------------------------------------------------------------
|
|
410
410
|
/**
|
|
411
|
-
* Compute OMERO metadata from a
|
|
411
|
+
* Compute OMERO metadata from a NgffMultiscales object.
|
|
412
412
|
*
|
|
413
413
|
* This is a convenience function that computes OMERO metadata from the
|
|
414
414
|
* highest resolution image in a multiscales pyramid for accurate statistics.
|
|
415
415
|
*
|
|
416
|
-
* @param multiscales - The
|
|
416
|
+
* @param multiscales - The NgffMultiscales object to compute metadata for
|
|
417
417
|
* @param options - Optional configuration for quantiles, colors, and labels
|
|
418
418
|
* @returns Promise resolving to Omero metadata with computed window parameters
|
|
419
419
|
*/
|
|
420
420
|
export async function computeOmeroFromMultiscales(multiscales, options = {}) {
|
|
421
421
|
if (!multiscales.images || multiscales.images.length === 0) {
|
|
422
|
-
throw new Error("
|
|
422
|
+
throw new Error("NgffMultiscales has no images");
|
|
423
423
|
}
|
|
424
424
|
// Always use the highest resolution (first) image for accurate statistics
|
|
425
425
|
const image = multiscales.images[0];
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@@ -1 +1 @@
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1
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-
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1
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+
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|
package/esm/utils/factory.d.ts
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import { NgffImage } from "../types/ngff_image.js";
|
|
2
|
-
import {
|
|
2
|
+
import { NgffMultiscales } from "../types/multiscales.js";
|
|
3
3
|
import type { Axis, AxisOrientation, Dataset, Metadata, Scale, Translation } from "../types/zarr_metadata.js";
|
|
4
4
|
import type { AxesType, SupportedDims, Units } from "../types/units.js";
|
|
5
5
|
import type { Methods } from "../types/methods.js";
|
|
@@ -10,5 +10,6 @@ export declare function createScale(scale: number[]): Scale;
|
|
|
10
10
|
export declare function createTranslation(translation: number[]): Translation;
|
|
11
11
|
export declare function createDataset(path: string, scale: number[], translation: number[]): Dataset;
|
|
12
12
|
export declare function createMetadata(axes: Axis[], datasets: Dataset[], name?: string, version?: string): Metadata;
|
|
13
|
-
export declare function
|
|
13
|
+
export declare function createNgffMultiscales(images: NgffImage[], metadata: Metadata, scaleFactors?: (Record<string, number> | number)[], method?: Methods): NgffMultiscales;
|
|
14
|
+
export declare const createMultiscales: typeof createNgffMultiscales;
|
|
14
15
|
//# sourceMappingURL=factory.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"factory.d.ts","sourceRoot":"","sources":["../../src/utils/factory.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACnD,OAAO,EAAE,
|
|
1
|
+
{"version":3,"file":"factory.d.ts","sourceRoot":"","sources":["../../src/utils/factory.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACnD,OAAO,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC1D,OAAO,KAAK,EACV,IAAI,EACJ,eAAe,EACf,OAAO,EACP,QAAQ,EACR,KAAK,EACL,WAAW,EACZ,MAAM,2BAA2B,CAAC;AACnC,OAAO,KAAK,EAAE,QAAQ,EAAE,aAAa,EAAE,KAAK,EAAE,MAAM,mBAAmB,CAAC;AACxE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AACnD,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AAuB9D,wBAAsB,eAAe,CACnC,KAAK,EAAE,WAAW,GAAG,MAAM,EAAE,EAC7B,KAAK,EAAE,MAAM,EAAE,EACf,KAAK,EAAE,MAAM,EACb,IAAI,EAAE,MAAM,EAAE,EACd,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,EAC7B,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,EACnC,IAAI,SAAU,GACb,OAAO,CAAC,SAAS,CAAC,CAYpB;AAED,wBAAgB,UAAU,CACxB,IAAI,EAAE,aAAa,EACnB,IAAI,EAAE,QAAQ,EACd,IAAI,CAAC,EAAE,KAAK,EACZ,WAAW,CAAC,EAAE,eAAe,GAAG,qBAAqB,GACpD,IAAI,CAUN;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,KAAK,CAKlD;AAED,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,WAAW,CAKpE;AAED,wBAAgB,aAAa,CAC3B,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,EAAE,EACf,WAAW,EAAE,MAAM,EAAE,GACpB,OAAO,CAQT;AAED,wBAAgB,cAAc,CAC5B,IAAI,EAAE,IAAI,EAAE,EACZ,QAAQ,EAAE,OAAO,EAAE,EACnB,IAAI,SAAU,EACd,OAAO,SAAQ,GACd,QAAQ,CASV;AAED,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,SAAS,EAAE,EACnB,QAAQ,EAAE,QAAQ,EAClB,YAAY,CAAC,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,EAClD,MAAM,CAAC,EAAE,OAAO,GACf,eAAe,CAQjB;AAGD,eAAO,MAAM,iBAAiB,8BAAwB,CAAC"}
|
package/esm/utils/factory.js
CHANGED
|
@@ -3,7 +3,7 @@
|
|
|
3
3
|
import * as zarr from "zarrita";
|
|
4
4
|
import { defaultCodecs } from "../utils/codecs.js";
|
|
5
5
|
import { NgffImage } from "../types/ngff_image.js";
|
|
6
|
-
import {
|
|
6
|
+
import { NgffMultiscales } from "../types/multiscales.js";
|
|
7
7
|
// Create a zarr.Array for testing using an in-memory store
|
|
8
8
|
async function createTestZarrArray(shape, dtype, chunks, name) {
|
|
9
9
|
const store = new Map();
|
|
@@ -71,8 +71,8 @@ export function createMetadata(axes, datasets, name = "image", version = "0.4")
|
|
|
71
71
|
version,
|
|
72
72
|
};
|
|
73
73
|
}
|
|
74
|
-
export function
|
|
75
|
-
return new
|
|
74
|
+
export function createNgffMultiscales(images, metadata, scaleFactors, method) {
|
|
75
|
+
return new NgffMultiscales({
|
|
76
76
|
images: [...images],
|
|
77
77
|
metadata,
|
|
78
78
|
scaleFactors: scaleFactors || undefined,
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|
@@ -80,4 +80,6 @@ export function createMultiscales(images, metadata, scaleFactors, method) {
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80
80
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chunks: undefined,
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81
81
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});
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82
82
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}
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83
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+
// Backwards-compatible alias
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84
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+
export const createMultiscales = createNgffMultiscales;
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83
85
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//# sourceMappingURL=factory.js.map
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package/esm/utils/factory.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
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1
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+
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