@cleocode/core 2026.4.57 → 2026.4.59

package/dist/memory/brain-lifecycle.js.map

@@ -0,0 +1 @@
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package/dist/memory/brain-links.js

@@ -0,0 +1,161 @@
+/**
+ * Cross-reference management between BRAIN memory entries and tasks.
+ *
+ * Provides linking/unlinking and query functions for relationships
+ * between decisions, patterns, learnings and CLEO tasks.
+ *
+ * @task T5156
+ * @epic T5149
+ */
+import { getBrainAccessor } from '../store/brain-accessor.js';
+import { taskExistsInTasksDb } from '../store/cross-db-cleanup.js';
+import { getDb } from '../store/sqlite.js';
+/**
+ * Link a memory entry to a task.
+ *
+ * @task T5156
+ */
+export async function linkMemoryToTask(projectRoot, memoryType, memoryId, taskId, linkType) {
+    if (!memoryId || !taskId) {
+        throw new Error('memoryId and taskId are required');
+    }
+    // Write-guard: reject stale task IDs before creating cross-db reference
+    const tasksDb = await getDb(projectRoot);
+    if (!(await taskExistsInTasksDb(taskId, tasksDb))) {
+        throw new Error(`Write-guard: task ${taskId} does not exist in tasks.db — refusing to create brain link`);
+    }
+    const accessor = await getBrainAccessor(projectRoot);
+    // Check if link already exists
+    const existingLinks = await accessor.getLinksForMemory(memoryType, memoryId);
+    const duplicate = existingLinks.find((l) => l.taskId === taskId && l.linkType === linkType);
+    if (duplicate) {
+        return duplicate;
+    }
+    await accessor.addLink({
+        memoryType,
+        memoryId,
+        taskId,
+        linkType,
+    });
+    // Return the created link
+    const links = await accessor.getLinksForMemory(memoryType, memoryId);
+    return links.find((l) => l.taskId === taskId && l.linkType === linkType);
+}
+/**
+ * Remove a link between a memory entry and a task.
+ *
+ * @task T5156
+ */
+export async function unlinkMemoryFromTask(projectRoot, memoryType, memoryId, taskId, linkType) {
+    const accessor = await getBrainAccessor(projectRoot);
+    await accessor.removeLink(memoryType, memoryId, taskId, linkType);
+}
+/**
+ * Get all memory entries linked to a specific task.
+ *
+ * @task T5156
+ */
+export async function getTaskLinks(projectRoot, taskId) {
+    const accessor = await getBrainAccessor(projectRoot);
+    return accessor.getLinksForTask(taskId);
+}
+/**
+ * Get all tasks linked to a specific memory entry.
+ *
+ * @task T5156
+ */
+export async function getMemoryLinks(projectRoot, memoryType, memoryId) {
+    const accessor = await getBrainAccessor(projectRoot);
+    return accessor.getLinksForMemory(memoryType, memoryId);
+}
+/**
+ * Batch create multiple links at once.
+ *
+ * @task T5156
+ */
+export async function bulkLink(projectRoot, links) {
+    const accessor = await getBrainAccessor(projectRoot);
+    const tasksDb = await getDb(projectRoot);
+    let created = 0;
+    let skipped = 0;
+    for (const link of links) {
+        // Write-guard: reject stale task IDs before creating cross-db reference
+        if (!(await taskExistsInTasksDb(link.taskId, tasksDb))) {
+            skipped++;
+            continue;
+        }
+        // Check for duplicate
+        const existing = await accessor.getLinksForMemory(link.memoryType, link.memoryId);
+        const duplicate = existing.find((l) => l.taskId === link.taskId && l.linkType === link.linkType);
+        if (duplicate) {
+            skipped++;
+            continue;
+        }
+        await accessor.addLink({
+            memoryType: link.memoryType,
+            memoryId: link.memoryId,
+            taskId: link.taskId,
+            linkType: link.linkType,
+        });
+        created++;
+    }
+    return { created, skipped };
+}
+/**
+ * Get all decisions linked to a task.
+ * Convenience method that fetches full decision rows.
+ *
+ * @task T5156
+ */
+export async function getLinkedDecisions(projectRoot, taskId) {
+    const accessor = await getBrainAccessor(projectRoot);
+    const links = await accessor.getLinksForTask(taskId);
+    const decisionLinks = links.filter((l) => l.memoryType === 'decision');
+    const decisions = [];
+    for (const link of decisionLinks) {
+        const decision = await accessor.getDecision(link.memoryId);
+        if (decision) {
+            decisions.push(decision);
+        }
+    }
+    return decisions;
+}
+/**
+ * Get all patterns linked to a task.
+ * Convenience method that fetches full pattern rows.
+ *
+ * @task T5156
+ */
+export async function getLinkedPatterns(projectRoot, taskId) {
+    const accessor = await getBrainAccessor(projectRoot);
+    const links = await accessor.getLinksForTask(taskId);
+    const patternLinks = links.filter((l) => l.memoryType === 'pattern');
+    const patterns = [];
+    for (const link of patternLinks) {
+        const pattern = await accessor.getPattern(link.memoryId);
+        if (pattern) {
+            patterns.push(pattern);
+        }
+    }
+    return patterns;
+}
+/**
+ * Get all learnings linked to a task.
+ * Convenience method that fetches full learning rows.
+ *
+ * @task T5156
+ */
+export async function getLinkedLearnings(projectRoot, taskId) {
+    const accessor = await getBrainAccessor(projectRoot);
+    const links = await accessor.getLinksForTask(taskId);
+    const learningLinks = links.filter((l) => l.memoryType === 'learning');
+    const learnings = [];
+    for (const link of learningLinks) {
+        const learning = await accessor.getLearning(link.memoryId);
+        if (learning) {
+            learnings.push(learning);
+        }
+    }
+    return learnings;
+}
+//# sourceMappingURL=brain-links.js.map

package/dist/memory/brain-links.js.map

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package/dist/memory/brain-maintenance.js

@@ -0,0 +1,125 @@
+/**
+ * Brain Maintenance Runner
+ *
+ * Combines temporal decay, memory consolidation, and embedding backfill
+ * into a single idempotent maintenance pass. Designed to be run on a
+ * schedule or on-demand via `cleo brain maintenance`.
+ *
+ * Steps run in order:
+ *   1. Temporal decay   — reduce confidence of stale learnings
+ *   2. Consolidation    — merge duplicate/similar old observations
+ *   3. Embedding backfill — populate vectors for observations without them
+ *
+ * Each step is individually opt-outable via skip flags, making the
+ * operation safe to re-run at any frequency.
+ *
+ * @task T143
+ * @epic T134
+ * @why Enable scheduled brain optimization via single command
+ * @what Combined maintenance runner with CLI command and progress reporting
+ */
+import { reconcileOrphanedRefs } from '../store/cross-db-cleanup.js';
+import { applyTemporalDecay, consolidateMemories, runTierPromotion } from './brain-lifecycle.js';
+import { populateEmbeddings } from './brain-retrieval.js';
+// ============================================================================
+// Runner
+// ============================================================================
+/**
+ * Run a combined brain maintenance pass: decay, consolidation, and embeddings.
+ *
+ * The three steps always run in the same order:
+ *   1. `applyTemporalDecay` — decay stale learning confidence values
+ *   2. `consolidateMemories` — merge clustered old observations
+ *   3. `populateEmbeddings` — backfill missing vectors
+ *
+ * Each step is optional via the `skip*` flags. The function is idempotent:
+ * re-running it when there is nothing to process returns zero counts.
+ *
+ * @param projectRoot - Absolute path to the project root (used to locate brain.db)
+ * @param options - Optional skip flags and progress callback
+ * @returns Aggregated counts from each step plus total wall-clock duration
+ *
+ * @example
+ * ```ts
+ * const result = await runBrainMaintenance('/my/project', {
+ *   onProgress: (step, current, total) => {
+ *     console.log(`[${step}] ${current}/${total}`);
+ *   },
+ * });
+ * console.log(`Done in ${result.duration}ms`);
+ * ```
+ *
+ * @task T143
+ * @epic T134
+ */
+export async function runBrainMaintenance(projectRoot, options) {
+    const { skipDecay = false, skipConsolidation = false, skipReconciliation = false, skipTierPromotion = false, skipEmbeddings = false, onProgress, } = options ?? {};
+    const startTime = Date.now();
+    // Default zero values for each step (used when step is skipped).
+    const decayResult = { affected: 0 };
+    const consolidationResult = { merged: 0, removed: 0 };
+    const reconciliationResult = {
+        decisionsFixed: 0,
+        observationsFixed: 0,
+        linksRemoved: 0,
+    };
+    const tierPromotionResult = { promoted: 0, evicted: 0 };
+    const embeddingsResult = {
+        processed: 0,
+        skipped: 0,
+        errors: 0,
+    };
+    // Step 1: Temporal decay
+    if (!skipDecay) {
+        onProgress?.('decay', 0, 1);
+        const raw = await applyTemporalDecay(projectRoot);
+        decayResult.affected = raw.updated;
+        onProgress?.('decay', 1, 1);
+    }
+    // Step 2: Memory consolidation
+    if (!skipConsolidation) {
+        onProgress?.('consolidation', 0, 1);
+        const raw = await consolidateMemories(projectRoot);
+        consolidationResult.merged = raw.merged;
+        consolidationResult.removed = raw.archived;
+        onProgress?.('consolidation', 1, 1);
+    }
+    // Step 3: Cross-DB orphaned reference reconciliation
+    if (!skipReconciliation) {
+        onProgress?.('reconciliation', 0, 1);
+        const raw = await reconcileOrphanedRefs(projectRoot);
+        reconciliationResult.decisionsFixed = raw.decisionsFixed;
+        reconciliationResult.observationsFixed = raw.observationsFixed;
+        reconciliationResult.linksRemoved = raw.linksRemoved;
+        onProgress?.('reconciliation', 1, 1);
+    }
+    // Step 4: Tier promotion — promote short→medium and medium→long based on
+    // age, quality score, citation count, and verification status (T614).
+    if (!skipTierPromotion) {
+        onProgress?.('tier-promotion', 0, 1);
+        const raw = await runTierPromotion(projectRoot);
+        tierPromotionResult.promoted = raw.promoted.length;
+        tierPromotionResult.evicted = raw.evicted.length;
+        onProgress?.('tier-promotion', 1, 1);
+    }
+    // Step 5: Embedding backfill (with per-item progress relay)
+    if (!skipEmbeddings) {
+        const raw = await populateEmbeddings(projectRoot, {
+            onProgress: (current, total) => {
+                onProgress?.('embeddings', current, total);
+            },
+        });
+        embeddingsResult.processed = raw.processed;
+        embeddingsResult.skipped = raw.skipped;
+        embeddingsResult.errors = raw.errors;
+    }
+    return {
+        decay: decayResult,
+        consolidation: consolidationResult,
+        reconciliation: reconciliationResult,
+        tierPromotion: tierPromotionResult,
+        embeddings: embeddingsResult,
+        duration: Date.now() - startTime,
+    };
+}
+//# sourceMappingURL=brain-maintenance.js.map

package/dist/memory/brain-maintenance.js.map

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package/dist/memory/brain-migration.js

@@ -0,0 +1,149 @@
+/**
+ * Migrate BRAIN memory from JSONL files to brain.db SQLite tables.
+ * Reads .cleo/memory/patterns.jsonl and .cleo/memory/learnings.jsonl
+ * and inserts into brain_patterns and brain_learnings tables.
+ *
+ * Idempotent: checks for existing entries by ID to skip duplicates.
+ *
+ * @task T5129
+ * @epic T5149
+ */
+import { existsSync, readFileSync } from 'node:fs';
+import { join } from 'node:path';
+import { getBrainAccessor } from '../store/brain-accessor.js';
+/**
+ * Read a JSONL file and parse each line as JSON.
+ * Returns parsed objects and any parse error messages.
+ */
+function readJsonlFile(filePath) {
+    if (!existsSync(filePath)) {
+        return { entries: [], errors: [] };
+    }
+    const content = readFileSync(filePath, 'utf-8').trim();
+    if (!content) {
+        return { entries: [], errors: [] };
+    }
+    const entries = [];
+    const errors = [];
+    for (const line of content.split('\n')) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        try {
+            entries.push(JSON.parse(trimmed));
+        }
+        catch (_err) {
+            errors.push(`Failed to parse line: ${trimmed.slice(0, 80)}...`);
+        }
+    }
+    return { entries, errors };
+}
+/**
+ * Migrate BRAIN memory data from JSONL files to brain.db.
+ *
+ * Reads:
+ * - .cleo/memory/patterns.jsonl -> brain_patterns table
+ * - .cleo/memory/learnings.jsonl -> brain_learnings table
+ *
+ * Skips entries where the ID already exists in the database (idempotent).
+ *
+ * @task T5129
+ */
+export async function migrateBrainData(projectRoot) {
+    const accessor = await getBrainAccessor(projectRoot);
+    const result = {
+        patternsImported: 0,
+        learningsImported: 0,
+        duplicatesSkipped: 0,
+        errors: [],
+    };
+    // Migrate patterns
+    const patternsPath = join(projectRoot, '.cleo', 'memory', 'patterns.jsonl');
+    const { entries: patterns, errors: patternErrors } = readJsonlFile(patternsPath);
+    result.errors.push(...patternErrors);
+    for (const p of patterns) {
+        try {
+            // Check if already exists
+            const existing = await accessor.getPattern(p.id);
+            if (existing) {
+                result.duplicatesSkipped++;
+                continue;
+            }
+            const row = {
+                id: p.id,
+                type: mapPatternType(p.type),
+                pattern: p.pattern,
+                context: p.context,
+                frequency: p.frequency ?? 1,
+                successRate: p.successRate ?? null,
+                impact: mapImpact(p.impact),
+                antiPattern: p.antiPattern ?? null,
+                mitigation: p.mitigation ?? null,
+                examplesJson: JSON.stringify(p.examples ?? []),
+                extractedAt: p.extractedAt ?? new Date().toISOString().replace('T', ' ').slice(0, 19),
+                updatedAt: p.updatedAt?.replace('T', ' ').slice(0, 19) ?? null,
+            };
+            await accessor.addPattern(row);
+            result.patternsImported++;
+        }
+        catch (err) {
+            result.errors.push(`Pattern ${p.id}: ${err instanceof Error ? err.message : String(err)}`);
+        }
+    }
+    // Migrate learnings
+    const learningsPath = join(projectRoot, '.cleo', 'memory', 'learnings.jsonl');
+    const { entries: learnings, errors: learningErrors } = readJsonlFile(learningsPath);
+    result.errors.push(...learningErrors);
+    for (const l of learnings) {
+        try {
+            // Check if already exists
+            const existing = await accessor.getLearning(l.id);
+            if (existing) {
+                result.duplicatesSkipped++;
+                continue;
+            }
+            const row = {
+                id: l.id,
+                insight: l.insight,
+                source: l.source,
+                confidence: l.confidence,
+                actionable: l.actionable ?? false,
+                application: l.application ?? null,
+                applicableTypesJson: JSON.stringify(l.applicableTypes ?? []),
+                createdAt: l.createdAt ?? new Date().toISOString().replace('T', ' ').slice(0, 19),
+                updatedAt: l.updatedAt?.replace('T', ' ').slice(0, 19) ?? null,
+            };
+            await accessor.addLearning(row);
+            result.learningsImported++;
+        }
+        catch (err) {
+            result.errors.push(`Learning ${l.id}: ${err instanceof Error ? err.message : String(err)}`);
+        }
+    }
+    return result;
+}
+/**
+ * Map JSONL pattern type to brain schema enum.
+ * Falls back to 'workflow' for unrecognized types.
+ */
+function mapPatternType(type) {
+    const valid = ['workflow', 'blocker', 'success', 'failure', 'optimization'];
+    if (valid.includes(type)) {
+        return type;
+    }
+    return 'workflow';
+}
+/**
+ * Map JSONL impact level to brain schema enum.
+ * Returns null for unrecognized values.
+ */
+function mapImpact(impact) {
+    if (!impact)
+        return null;
+    const valid = ['low', 'medium', 'high'];
+    if (valid.includes(impact)) {
+        return impact;
+    }
+    return null;
+}
+//# sourceMappingURL=brain-migration.js.map

package/dist/memory/brain-migration.js.map

@@ -0,0 +1 @@
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