y_petri 2.1.25 → 2.1.26

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checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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@@ -26,7 +26,7 @@ module YPetri::Core::Timed::Gillespie
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  Kernel::p propensities
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  update_next_gillespie_time( propensities )
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  until ( @next_gillespie_time > target_time )
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- gillespie_step!
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+ gillespie_step! propensities
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  note_state_change
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  propensities = propensity_vector_TS
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  update_next_gillespie_time( propensities )
@@ -64,11 +64,11 @@ module YPetri::Core::Timed::Gillespie
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  # Chooses the transition to fire.
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  #
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  def choose_TS_transition( propensities )
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- n = rng.rand
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- propensities.index do |propensity|
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- n -= propensity
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- n <= 0
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- end
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+ n = rng.rand * Σ( propensities )
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+ transitions[ propensities.index do |propensity|
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+ n -= propensity
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+ n <= 0
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+ end ]
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  end
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  # Fires a transition.
@@ -1,4 +1,4 @@
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  module YPetri
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- VERSION = "2.1.25"
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+ VERSION = "2.1.26"
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  DEBUG = false
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  end
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: y_petri
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  version: !ruby/object:Gem::Version
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- version: 2.1.25
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+ version: 2.1.26
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  platform: ruby
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  authors:
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  - boris