wwood-rarff 0.2.3 → 0.2.4

data/Manifest.txt

@@ -3,6 +3,3 @@ Manifest.txt
 README.txt
 Rakefile
 lib/rarff.rb
-test/test_arff.arff
-test/test_sparse_arff.arff 
-test/ts_rarff.rb

data/Rakefile

@@ -1,24 +1,53 @@
 require 'rubygems'
-require 'hoe'
-#require './lib/rarff.rb'
- 
-gem_name = 'rarff'
-hoe = Hoe.new(gem_name,'0.2.3') do |p|
-  
-  p.author = "Andy Payne, Ben J Woodcroft"
-  p.email = "apayne .at. gmail.com, b.woodcroft@pgrad.unimelb.edu.au"
-  p.url = "http://adenserparlance.blogspot.com/2007/01/rarff-simple-arff-library-in-ruby.html"
-  
-  p.description = 'Rarff is a Ruby library for dealing with Attribute-Relation File Format (ARFF) files. ARFF files are used to specify 
-data sets for data mining and machine learning.'
-  p.summary = 'Rarff is a Ruby library for dealing with Attribute-Relation File Format (ARFF) files'
-  
-  p.rdoc_pattern = /(^lib\/.*\.rb$|^examples\/.*\.rb$|^README|^History|^License)/
-  
-  p.spec_extras = {
-    :require_paths => ['lib','test'],
-    :has_rdoc => true,
-    :extra_rdoc_files => ["README.txt"],
-    :rdoc_options => ["--exclude", "test/*", "--main", "README.txt", "--inline-source"]
-  }
+require 'rake'
+
+begin
+  require 'jeweler'
+  Jeweler::Tasks.new do |gem|
+    gem.name = "wwood-rarff"
+    gem.summary = %Q{Rarff is a Ruby library for dealing with Attribute-Relation File Format (ARFF) files}
+    gem.description = %Q{Rarff is a Ruby library for dealing with Attribute-Relation File Format (ARFF) files. ARFF files are used to specify 
+data sets for data mining and machine learning.}
+    gem.email = "donttrustben near gmail.com"
+    gem.homepage = "http://github.com/wwood/rarff"
+    gem.authors = ["Ben J Woodcroft","Andy Payne"]
+    gem.add_development_dependency "thoughtbot-shoulda", ">= 0"
+    # gem is a Gem::Specification... see http://www.rubygems.org/read/chapter/20 for additional settings
+  end
+rescue LoadError
+  puts "Jeweler (or a dependency) not available. Install it with: sudo gem install jeweler"
+end
+
+require 'rake/testtask'
+Rake::TestTask.new(:test) do |test|
+  test.libs << 'lib' << 'test'
+  test.pattern = 'test/**/test_*.rb'
+  test.verbose = true
+end
+
+begin
+  require 'rcov/rcovtask'
+  Rcov::RcovTask.new do |test|
+    test.libs << 'test'
+    test.pattern = 'test/**/test_*.rb'
+    test.verbose = true
+  end
+rescue LoadError
+  task :rcov do
+    abort "RCov is not available. In order to run rcov, you must: sudo gem install spicycode-rcov"
+  end
+end
+
+task :test => :check_dependencies
+
+task :default => :test
+
+require 'rake/rdoctask'
+Rake::RDocTask.new do |rdoc|
+  version = File.exist?('VERSION') ? File.read('VERSION') : ""
+
+  rdoc.rdoc_dir = 'rdoc'
+  rdoc.title = "blah #{version}"
+  rdoc.rdoc_files.include('README*')
+  rdoc.rdoc_files.include('lib/**/*.rb')
 end

data/VERSION

@@ -0,0 +1 @@
+0.2.4

data/lib/rarff.rb

@@ -217,14 +217,19 @@ module Rarff
 
     # Make all String type attributes into nominal attributes, because
     # they are more useful in WEKA because more techniques handle them than
-    # strings
-    def set_string_attributes_to_nominal
+    # strings.
+    #
+    # column_indices is an optional argumetn specifying the columns that
+    # are to be set to nominal (0 based indexes). if nil (the default), then
+    # all columns are included
+    def set_string_attributes_to_nominal(column_indices = nil)
       nominals = {}
       # Frustratingly, we have to traverse this 2D array with the
       # wrong dimension first. Oh well.
       @instances.each_with_index do |row, row_index|
         row.each_with_index do |string, col_index|
           next unless @attributes[col_index].type == ATTRIBUTE_STRING
+          next unless column_indices.nil? or column_indices.include?(col_index)
 
           nominals[col_index] ||= {}
           nominals[col_index][string] ||= true

data/rarff.gemspec

@@ -0,0 +1,53 @@
+# Generated by jeweler
+# DO NOT EDIT THIS FILE DIRECTLY
+# Instead, edit Jeweler::Tasks in Rakefile, and run the gemspec command
+# -*- encoding: utf-8 -*-
+
+Gem::Specification.new do |s|
+  s.name = %q{rarff}
+  s.version = "0.2.4"
+
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = ["Ben J Woodcroft", "Andy Payne"]
+  s.date = %q{2009-11-19}
+  s.description = %q{Rarff is a Ruby library for dealing with Attribute-Relation File Format (ARFF) files. ARFF files are used to specify 
+data sets for data mining and machine learning.}
+  s.email = %q{donttrustben near gmail.com}
+  s.extra_rdoc_files = [
+    "README.txt"
+  ]
+  s.files = [
+    "History.txt",
+     "Manifest.txt",
+     "README.txt",
+     "Rakefile",
+     "VERSION",
+     "lib/rarff.rb",
+     "rarff.gemspec",
+     "test/test_arff.arff",
+     "test/test_rarff.rb",
+     "test/test_sparse_arff.arff"
+  ]
+  s.homepage = %q{http://github.com/wwood/rarff}
+  s.rdoc_options = ["--charset=UTF-8"]
+  s.require_paths = ["lib"]
+  s.rubygems_version = %q{1.3.5}
+  s.summary = %q{Rarff is a Ruby library for dealing with Attribute-Relation File Format (ARFF) files}
+  s.test_files = [
+    "test/test_rarff.rb"
+  ]
+
+  if s.respond_to? :specification_version then
+    current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
+    s.specification_version = 3
+
+    if Gem::Version.new(Gem::RubyGemsVersion) >= Gem::Version.new('1.2.0') then
+      s.add_development_dependency(%q<thoughtbot-shoulda>, [">= 0"])
+    else
+      s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
+    end
+  else
+    s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
+  end
+end
+

data/test/test_rarff.rb

@@ -38,7 +38,7 @@ class TestArffLib < Test::Unit::TestCase
     #               puts "rel.to_arff:\n(\n#{rel.to_arff}\n)\n"
     assert_equal(arff_file_str, rel.to_arff, "Arff creation test failed.")
   end
-  #
+ 
   #  # Test creation of a sparse arff file string.
   #  def test_sparse_arff_creation
   #
@@ -219,6 +219,72 @@ two, four
     #               puts "rel.to_arff:\n(\n#{rel.to_arff}\n)\n"
     assert_equal(arff_file_str, rel.to_arff, "test_strings_as_nominal")
   end
+    
+  def test_set_strings_nominal2
+    arff_file_str = <<-END_OF_ARFF_FILE
+@RELATION MyCoolRelation
+@ATTRIBUTE Attr0 NUMERIC
+@ATTRIBUTE Attr1 {three,four}
+@DATA
+1, three
+2, four
+    END_OF_ARFF_FILE
+
+    arff_file_str.gsub!(/\n$/, '')
+
+    instances = [ [1,'three'],[2,'four']]
+
+    rel = Rarff::Relation.new('MyCoolRelation')
+    rel.instances = instances
+    rel.set_string_attributes_to_nominal
+
+    #               puts "rel.to_arff:\n(\n#{rel.to_arff}\n)\n"
+    assert_equal(arff_file_str, rel.to_arff, "test_strings_as_nominal")
+  end
+
+  def test_strings_nominal_with_arguments1
+    arff_file_str = <<-END_OF_ARFF_FILE
+@RELATION MyCoolRelation
+@ATTRIBUTE Attr0 NUMERIC
+@ATTRIBUTE Attr1 STRING
+@DATA
+1, three
+2, four
+    END_OF_ARFF_FILE
+
+    arff_file_str.gsub!(/\n$/, '')
+
+    instances = [ [1,'three'],[2,'four']]
+
+    rel = Rarff::Relation.new('MyCoolRelation')
+    rel.instances = instances
+    rel.set_string_attributes_to_nominal([0])
+
+    #               puts "rel.to_arff:\n(\n#{rel.to_arff}\n)\n"
+    assert_equal(arff_file_str, rel.to_arff, "test_strings_as_nominal")
+  end
+
+  def test_strings_nominal_with_arguments2
+    arff_file_str = <<-END_OF_ARFF_FILE
+@RELATION MyCoolRelation
+@ATTRIBUTE Attr0 NUMERIC
+@ATTRIBUTE Attr1 {three,four}
+@DATA
+1, three
+2, four
+    END_OF_ARFF_FILE
+
+    arff_file_str.gsub!(/\n$/, '')
+
+    instances = [ [1,'three'],[2,'four']]
+
+    rel = Rarff::Relation.new('MyCoolRelation')
+    rel.instances = instances
+    rel.set_string_attributes_to_nominal([0,1])
+
+    #               puts "rel.to_arff:\n(\n#{rel.to_arff}\n)\n"
+    assert_equal(arff_file_str, rel.to_arff, "test_strings_as_nominal")
+  end
   
   def test_boolean_2
     arff_file_str = <<-END_OF_ARFF_FILE
@@ -242,6 +308,32 @@ two, four
 
     assert_equal(arff_file_str, rel.to_arff, "missing data output failure")   
   end
+
+  def test_commas_in_attribute_name
+    arff_file_str = <<-END_OF_ARFF_FILE
+@RELATION MyCoolRelation
+@ATTRIBUTE subject {ruby_yeh,ruby}
+@ATTRIBUTE Attr1 {duh}
+@DATA
+ruby__yeh, duh
+ruby, duh
+    END_OF_ARFF_FILE
+
+    arff_file_str.gsub!(/\n$/, '')
+
+    instances = [
+      ['ruby, yeh','duh'],
+      ['ruby','duh']
+    ]
+
+
+    rel = Rarff::Relation.new('MyCoolRelation')
+    rel.instances = instances
+    rel.attributes[0].name = 'subject'
+    rel.set_string_attributes_to_nominal
+
+    assert_equal(arff_file_str, rel.to_arff, "comma in string attribute failure")
+  end
 end
 
 

data/test/test_sparse_arff.arff

@@ -0,0 +1,24 @@
+% Sample sparse ARFF file
+@RELATION sparseness
+
+@ATTRIBUTE attr1  NUMERIC
+@ATTRIBUTE attr2   NUMERIC
+@ATTRIBUTE attr3  NUMERIC
+@ATTRIBUTE attr4   NUMERIC
+@ATTRIBUTE attr5   NUMERIC
+@ATTRIBUTE attr6   NUMERIC
+@ATTRIBUTE attr7   NUMERIC
+@ATTRIBUTE attr8   NUMERIC
+@ATTRIBUTE attr9   NUMERIC
+@ATTRIBUTE attr10   NUMERIC
+@ATTRIBUTE attr11   NUMERIC
+@ATTRIBUTE attr12   NUMERIC
+@ATTRIBUTE attr13   NUMERIC
+
+@DATA
+{3 7, 10 34}
+{1 2.4, 4 62, 12 19}
+{0 0, 1 1, 2 2, 3 3, 4 4, 5 5, 6 6, 7 7, 8 8, 9 9, 10 10, 11 11, 12 12}
+{9 42}
+{2 54.3, 3 92, 11 10.2}
+

metadata

@@ -1,29 +1,32 @@
 --- !ruby/object:Gem::Specification 
 name: wwood-rarff
 version: !ruby/object:Gem::Version 
-  version: 0.2.3
+  version: 0.2.4
 platform: ruby
 authors: 
-- Andy Payne, Ben J Woodcroft
+- Ben J Woodcroft
+- Andy Payne
 autorequire: 
 bindir: bin
 cert_chain: []
 
-date: 2009-02-18 00:00:00 -08:00
+date: 2009-11-19 00:00:00 +11:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
-  name: hoe
+  name: thoughtbot-shoulda
   type: :development
   version_requirement: 
   version_requirements: !ruby/object:Gem::Requirement 
     requirements: 
     - - ">="
       - !ruby/object:Gem::Version 
-        version: 1.8.3
+        version: "0"
     version: 
-description: Rarff is a Ruby library for dealing with Attribute-Relation File Format (ARFF) files. ARFF files are used to specify  data sets for data mining and machine learning.
-email: apayne .at. gmail.com, b.woodcroft@pgrad.unimelb.edu.au
+description: |-
+  Rarff is a Ruby library for dealing with Attribute-Relation File Format (ARFF) files. ARFF files are used to specify 
+  data sets for data mining and machine learning.
+email: donttrustben near gmail.com
 executables: []
 
 extensions: []
@@ -35,23 +38,21 @@ files:
 - Manifest.txt
 - README.txt
 - Rakefile
+- VERSION
 - lib/rarff.rb
+- rarff.gemspec
 - test/test_arff.arff
-- "test/test_sparse_arff.arff "
-- test/ts_rarff.rb
 - test/test_rarff.rb
+- test/test_sparse_arff.arff
 has_rdoc: true
-homepage: http://adenserparlance.blogspot.com/2007/01/rarff-simple-arff-library-in-ruby.html
+homepage: http://github.com/wwood/rarff
+licenses: []
+
 post_install_message: 
 rdoc_options: 
-- --exclude
-- test/*
-- --main
-- README.txt
-- --inline-source
+- --charset=UTF-8
 require_paths: 
 - lib
-- test
 required_ruby_version: !ruby/object:Gem::Requirement 
   requirements: 
   - - ">="
@@ -66,10 +67,10 @@ required_rubygems_version: !ruby/object:Gem::Requirement
   version: 
 requirements: []
 
-rubyforge_project: rarff
-rubygems_version: 1.2.0
+rubyforge_project: 
+rubygems_version: 1.3.5
 signing_key: 
-specification_version: 2
+specification_version: 3
 summary: Rarff is a Ruby library for dealing with Attribute-Relation File Format (ARFF) files
 test_files: 
 - test/test_rarff.rb