wrnap 0.12.1 → 0.12.2

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: fd848df338cd8be9263635992ab77d8d6871f89e
-  data.tar.gz: 95be3d8fb71e88402d2258cfaa9b28b5bc1fe21b
+  metadata.gz: 1a389b503ea7faf4bfb02eb55a8ec8d5802e4b9b
+  data.tar.gz: 3bcbe5611e4c409f7aa3c1f4dd730fde6ff9e24d
 SHA512:
-  metadata.gz: 7e66f6132d59888de7d028b3aed693253038fd75299eb99d48538aa71329dca2125a934d37c6ddb4e14748b2b0075201722224731cf634b07fbe68ae29f52880
-  data.tar.gz: 32891a130812b21dcac55d47a8b1819b0646433e0c500263153678a10d93841d556ff636740e3f7569271d287b1a4f34a8994e1ec6cc922bd08d727197d93acb
+  metadata.gz: d3d2dcd9a391a7ef41c0e76562132168847a0968c95cb2fc8b359349cffed8445677e0699d5758ec779b144676750304b9b8103cc616154a3b8ca5afd0c9069e
+  data.tar.gz: b34295c88b411d8195fbff6ef60ad863a9607a927c5e2eb94e8f326c76932c5ffd2d37cbc4919e56083e0d08b6fb76e7f6fb6a6d38ac70ee9ae45cf3c696204e

data/lib/wrnap/global/rna/metadata.rb

@@ -9,7 +9,7 @@ module Wrnap
         module InstanceMethods
           def self.included(base)
             base.class_eval do
-              def_delegator :@metadata, :data, :md
+              def_delegator :@metadata, :__data__, :md
             end
           end
 
@@ -23,16 +23,22 @@ module Wrnap
         end
 
         class Container
-          attr_reader :__rna__, :data
+          attr_reader :__rna__, :__data__
 
           def initialize(rna)
-            @__rna__, @data = rna, {}
+            @__rna__, @__data__ = rna, {}
           end
 
+          def inspect
+            "#<Metadata: %s>" % __data__.inspect
+          end
+
+          alias :to_s :inspect
+
           def method_missing(name, *args, &block)
             case args.size
-            when 0 then data[name]
-            when 1 then data[name.to_s.gsub(/=$/, "").to_sym] = args.first
+            when 0 then __data__[name]
+            when 1 then __data__[name.to_s.gsub(/=$/, "").to_sym] = args.first
             else super end
           end
         end

data/lib/wrnap/global/rna/tree.rb

@@ -6,7 +6,9 @@ module Wrnap
           meta_rna { |metadata| tree(TreePlanter.new(metadata.__rna__)) }
         end
 
-        def trunk; md[:tree] || with_tree.trunk; end
+        def trunk
+          md[:tree] || with_tree.trunk
+        end
       end
 
       class TreePlanter

data/lib/wrnap/global/rna.rb

@@ -107,6 +107,10 @@ module Wrnap
       alias :str_2 :second_structure
       alias :name  :comment
 
+      def copy_name_from(rna)
+        tap { @comment = rna.name }
+      end
+
       def empty_structure
         "." * seq.length
       end
@@ -165,11 +169,11 @@ module Wrnap
       end
 
       def pp
-        puts("> %s" % name) if name
-        puts("%s" % seq)    if seq
-        puts("%s" % str_1)  if str_1
-        puts("%s" % str_2)  if str_2
-        puts("%s" % meta)   if meta
+        puts("> %s" % name)       if name
+        puts("%s" % seq)          if seq
+        puts("%s" % str_1)        if str_1
+        puts("%s" % str_2)        if str_2
+        puts("%s" % meta.inspect) if meta
       end
 
       def inspect
@@ -177,7 +181,7 @@ module Wrnap
           ("#{seq[0, 20]   + (seq.length > 20   ? '... [%d]' % seq.length : '')}" if seq   && !seq.empty?),
           ("#{str_1[0, 20] + (str_1.length > 20 ? ' [%d]'    % seq.length : '')}" if str_1 && !str_1.empty?),
           ("#{str_2[0, 20] + (str_2.length > 20 ? ' [%d]'    % seq.length : '')}" if str_2 && !str_1.empty?),
-          (md.inspect unless md.empty?),
+          (md.inspect unless md.nil? || md.empty?),
           (name ? name : "#{self.class.name}")
         ].compact.join(", ")
       end

data/lib/wrnap/version.rb

@@ -1,3 +1,3 @@
 module Wrnap
-  VERSION = "0.12.1"
+  VERSION = "0.12.2"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: wrnap
 version: !ruby/object:Gem::Version
-  version: 0.12.1
+  version: 0.12.2
 platform: ruby
 authors:
 - Evan Senter
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-07-17 00:00:00.000000000 Z
+date: 2014-07-18 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler