workflow_manager 0.7.9 → 0.8.0
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- checksums.yaml +4 -4
- data/.gitignore +0 -1
- data/Gemfile.lock +31 -0
- data/config/environments/redis.conf +9 -5
- data/lib/workflow_manager/version.rb +1 -1
- data/start_workflow_manager.sh +3 -3
- metadata +7 -6
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
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---
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|
2
2
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SHA256:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 5668a0ae734ac5ac90ffc891559681da2412107a29cbc8a5b279c9ac9201a27e
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|
4
|
+
data.tar.gz: aa34a9a4ef006005e98d375520adfd2a8126ff835f76ff0a2d4432f439149248
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|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 42e691408c30e9f29321199423a25fbb3844f109cf2169074262cd3a2d08bd5b9f62e1bf759e3f0448fa25fdd592606be77b7a3789cf9c1f3e3ee411122d194e
|
|
7
|
+
data.tar.gz: 0572fa546e578c279d6efdb8c63dac03c2075fa5bedea5c854d49a42e1c0df7e54525ab0af9ae2c54bf567f5d39b13883b1f8ab2553595872829a286546ff8ca
|
data/.gitignore
CHANGED
data/Gemfile.lock
ADDED
|
@@ -0,0 +1,31 @@
|
|
|
1
|
+
PATH
|
|
2
|
+
remote: .
|
|
3
|
+
specs:
|
|
4
|
+
workflow_manager (0.7.9)
|
|
5
|
+
|
|
6
|
+
GEM
|
|
7
|
+
remote: https://rubygems.org/
|
|
8
|
+
specs:
|
|
9
|
+
concurrent-ruby (1.2.0)
|
|
10
|
+
connection_pool (2.3.0)
|
|
11
|
+
rack (3.0.4.1)
|
|
12
|
+
redis (5.0.6)
|
|
13
|
+
redis-client (>= 0.9.0)
|
|
14
|
+
redis-client (0.12.1)
|
|
15
|
+
connection_pool
|
|
16
|
+
sidekiq (7.0.5)
|
|
17
|
+
concurrent-ruby (< 2)
|
|
18
|
+
connection_pool (>= 2.3.0)
|
|
19
|
+
rack (>= 2.2.4)
|
|
20
|
+
redis-client (>= 0.11.0)
|
|
21
|
+
|
|
22
|
+
PLATFORMS
|
|
23
|
+
x86_64-linux
|
|
24
|
+
|
|
25
|
+
DEPENDENCIES
|
|
26
|
+
redis
|
|
27
|
+
sidekiq
|
|
28
|
+
workflow_manager!
|
|
29
|
+
|
|
30
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+
BUNDLED WITH
|
|
31
|
+
2.3.26
|
|
@@ -1,9 +1,13 @@
|
|
|
1
|
-
|
|
2
|
-
|
|
1
|
+
# example: https://raw.githubusercontent.com/redis/redis/7.0/redis.conf
|
|
2
|
+
# default, for production
|
|
3
|
+
port 6379
|
|
4
|
+
# for test
|
|
5
|
+
#port 6380
|
|
6
|
+
loglevel notice
|
|
7
|
+
logfile ../logs/redis.log
|
|
3
8
|
databases 5
|
|
4
|
-
save 300 10
|
|
9
|
+
save 3600 1 300 10 60 1000
|
|
5
10
|
rdbcompression yes
|
|
6
|
-
dir ./dbs
|
|
7
11
|
dbfilename redis.rdb
|
|
12
|
+
dir dbs
|
|
8
13
|
maxmemory 10gb
|
|
9
|
-
port 6379
|
data/start_workflow_manager.sh
CHANGED
|
@@ -1,11 +1,11 @@
|
|
|
1
1
|
#!/usr/bin/bash
|
|
2
2
|
source /usr/local/ngseq/etc/lmod_profile
|
|
3
|
-
module load Dev/Ruby/
|
|
4
|
-
module load Tools/Redis/
|
|
3
|
+
module load Dev/Ruby/3.1.3
|
|
4
|
+
module load Tools/Redis/7.0.8
|
|
5
5
|
conda activate gtools_env
|
|
6
6
|
which python
|
|
7
7
|
which g-sub
|
|
8
8
|
which g-req
|
|
9
9
|
mkdir -p logs
|
|
10
10
|
mkdir -p dbs
|
|
11
|
-
bundle exec workflow_manager -d druby://fgcz-h-
|
|
11
|
+
bundle exec workflow_manager -d druby://fgcz-h-031:40001
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: workflow_manager
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.
|
|
4
|
+
version: 0.8.0
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Functional Genomics Center Zurich
|
|
8
|
-
autorequire:
|
|
8
|
+
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date:
|
|
11
|
+
date: 2023-02-17 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: bundler
|
|
@@ -59,6 +59,7 @@ files:
|
|
|
59
59
|
- ".gitignore"
|
|
60
60
|
- ".rspec"
|
|
61
61
|
- Gemfile
|
|
62
|
+
- Gemfile.lock
|
|
62
63
|
- LICENSE.txt
|
|
63
64
|
- README.md
|
|
64
65
|
- Rakefile
|
|
@@ -97,7 +98,7 @@ homepage: ''
|
|
|
97
98
|
licenses:
|
|
98
99
|
- MIT
|
|
99
100
|
metadata: {}
|
|
100
|
-
post_install_message:
|
|
101
|
+
post_install_message:
|
|
101
102
|
rdoc_options: []
|
|
102
103
|
require_paths:
|
|
103
104
|
- lib
|
|
@@ -112,8 +113,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
112
113
|
- !ruby/object:Gem::Version
|
|
113
114
|
version: '0'
|
|
114
115
|
requirements: []
|
|
115
|
-
rubygems_version: 3.
|
|
116
|
-
signing_key:
|
|
116
|
+
rubygems_version: 3.3.26
|
|
117
|
+
signing_key:
|
|
117
118
|
specification_version: 4
|
|
118
119
|
summary: Workflow Manager manages job submissions using dRuby.
|
|
119
120
|
test_files:
|