workflow_manager 0.3.1 → 0.3.2

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Files changed (6) hide show
  1. checksums.yaml +7 -0
  2. data/README.md +47 -2
  3. data/config/environments/development.rb +1 -1
  4. data/config/environments/production.rb +1 -1
  5. data/lib/workflow_manager/version.rb +1 -1
  6. metadata +49 -50
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data/README.md CHANGED
@@ -1,6 +1,6 @@
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  # WorkflowManager
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- TODO: Write a gem description
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+ This library is a server/client application through dRuby protocol. Mainly it is expected to be used with [SUSHI](https://github.com/uzh/sushi) and [SushiFabric](https://github.com/uzh/sushi_fabric). However, it is possible to use it independently from [SUSHI](https://github.com/uzh/sushi). The main function is to create a worker thread to observe a submitted job by calling a server side function from a client.
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  ## Installation
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@@ -18,7 +18,52 @@ Or install it yourself as:
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  ## Usage
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- TODO: Write usage instructions here
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+ Server starts
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+ ~~~~
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+ $ workflow_manager -h 16-05-10 15:56
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+ Usage:
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+ workflow_manager -d [druby://host:port] -m [development|production]
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+ -d, --server server workflow manager URI (default: druby://localhost:12345)
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+ -m, --mode mode development|production (default: development)
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+ ~~~~
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+
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+ At the first execution, automatically the configulation file similar to the one of Ruby on Rails are generated in config directory as follows:
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+
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+ config/environments/development.rb
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+ ~~~~
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+ #!/usr/bin/env ruby
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+ # encoding: utf-8
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+
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+ WorkflowManager::Server.configure do |config|
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+ config.log_dir = 'logs'
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+ config.db_dir = 'dbs'
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+ config.interval = 30
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+ config.resubmit = 0
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+ config.cluster = WorkflowManager::LocalComputer.new('LocalComputer')
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+ end
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+ ~~~~
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+
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+ After installation, the following client commands become availabe:
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+
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+ * wfm_delete_command
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+ * wfm_get_log
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+ * wfm_get_script
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+ * wfm_hello
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+ * wfm_job_list
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+ * wfm_kill_job
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+ * wfm_monitoring
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+ * wfm_status
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+
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+ In order to submit a job script, call wfm_monitoring command:
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+
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+ ~~~~
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+ $ wfm_monitoring -h 16-05-10 16:03
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+ Usage:
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+ wfm_monitoring [options] [job_script.sh]
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+ -u, --user user who submitted? (default: sushi lover)
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+ -p, --project project project number (default: 1001)
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+ -d, --server server workflow manager URI (default: druby://localhost:12345)
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+ ~~~~
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  ## Contributing
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data/config/environments/development.rb CHANGED
@@ -6,6 +6,6 @@ WorkflowManager::Server.configure do |config|
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  config.db_dir = 'dbs'
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  config.interval = 30
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  config.resubmit = 0
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- config.cluster = WorkflowManager::FGCZCluster.new('FGCZCluster')
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+ config.cluster = WorkflowManager::LocalComputer.new('LocalComputer')
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  end
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data/config/environments/production.rb CHANGED
@@ -6,6 +6,6 @@ WorkflowManager::Server.configure do |config|
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  config.db_dir = 'dbs'
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  config.interval = 30
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  config.resubmit = 0
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- config.cluster = WorkflowManager::LocalComputer.new('local_computer')
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+ config.cluster = WorkflowManager::FGCZCluster.new('FGCZCluster')
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  end
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data/lib/workflow_manager/version.rb CHANGED
@@ -1,3 +1,3 @@
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  module WorkflowManager
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- VERSION = "0.3.1"
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+ VERSION = "0.3.2"
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  end
metadata CHANGED
@@ -1,43 +1,47 @@
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- --- !ruby/object:Gem::Specification
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+ --- !ruby/object:Gem::Specification
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  name: workflow_manager
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- version: !ruby/object:Gem::Version
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- prerelease:
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- version: 0.3.1
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+ version: !ruby/object:Gem::Version
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+ version: 0.3.2
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  platform: ruby
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- authors:
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+ authors:
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  - Functional Genomics Center Zurich
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  autorequire:
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  bindir: bin
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  cert_chain: []
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-
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- date: 2016-03-31 00:00:00 Z
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- dependencies:
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- - !ruby/object:Gem::Dependency
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+ date: 2016-05-31 00:00:00.000000000 Z
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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  name: bundler
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- prerelease: false
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- requirement: &id001 !ruby/object:Gem::Requirement
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- none: false
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- requirements:
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- - - ~>
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- - !ruby/object:Gem::Version
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- version: "1.3"
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '1.3'
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  type: :development
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- version_requirements: *id001
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- - !ruby/object:Gem::Dependency
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- name: rake
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  prerelease: false
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- requirement: &id002 !ruby/object:Gem::Requirement
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- none: false
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- requirements:
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '1.3'
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+ - !ruby/object:Gem::Dependency
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+ name: rake
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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  - - ">="
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- - !ruby/object:Gem::Version
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- version: "0"
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+ - !ruby/object:Gem::Version
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+ version: '0'
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  type: :development
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- version_requirements: *id002
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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  description: Workflow Manager manages job submissions using dRuby.
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- email:
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+ email:
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  - masaomi.hatakeyama@fgcz.uzh.ch
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- executables:
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+ executables:
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  - wfm_delete_command
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  - wfm_get_log
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  - wfm_get_script
@@ -48,12 +52,10 @@ executables:
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  - wfm_status
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  - workflow_manager
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  extensions: []
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-
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  extra_rdoc_files: []
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-
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- files:
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- - .gitignore
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- - .rspec
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+ files:
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+ - ".gitignore"
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+ - ".rspec"
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  - Gemfile
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  - LICENSE.txt
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  - README.md
@@ -78,34 +80,31 @@ files:
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  - spec/server_spec.rb
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  - spec/spec_helper.rb
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  - workflow_manager.gemspec
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- homepage: ""
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- licenses:
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+ homepage: ''
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+ licenses:
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  - MIT
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+ metadata: {}
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  post_install_message:
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  rdoc_options: []
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-
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- require_paths:
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+ require_paths:
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  - lib
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- required_ruby_version: !ruby/object:Gem::Requirement
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- none: false
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- requirements:
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+ required_ruby_version: !ruby/object:Gem::Requirement
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+ requirements:
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  - - ">="
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- - !ruby/object:Gem::Version
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- version: "0"
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- required_rubygems_version: !ruby/object:Gem::Requirement
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- none: false
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- requirements:
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ required_rubygems_version: !ruby/object:Gem::Requirement
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+ requirements:
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  - - ">="
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- - !ruby/object:Gem::Version
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- version: "0"
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+ - !ruby/object:Gem::Version
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+ version: '0'
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  requirements: []
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-
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  rubyforge_project:
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- rubygems_version: 1.8.23
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+ rubygems_version: 2.4.5.1
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  signing_key:
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- specification_version: 3
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+ specification_version: 4
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  summary: Workflow Manager manages job submissions using dRuby.
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- test_files:
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+ test_files:
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  - spec/cluster_spec.rb
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  - spec/server_spec.rb
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  - spec/spec_helper.rb