workflow_manager 0.3.1 → 0.3.2

Sign up to get free protection for your applications and to get access to all the features.
Files changed (6) hide show
  1. checksums.yaml +7 -0
  2. data/README.md +47 -2
  3. data/config/environments/development.rb +1 -1
  4. data/config/environments/production.rb +1 -1
  5. data/lib/workflow_manager/version.rb +1 -1
  6. metadata +49 -50
checksums.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ SHA1:
3
+ metadata.gz: fca8c934ed4bd7508c695b34610bfefd0f5d03d9
4
+ data.tar.gz: 301be246d6e1187eac057f9513ead709d00a2829
5
+ SHA512:
6
+ metadata.gz: fd1b774dc4e7312a7c86a4e76cdf8da64d9acc375b38bb193bf0ab12919e33da0753b136c4e0c3c06af937b8d3f65edd8d950419e474d3babee6e79a067a9618
7
+ data.tar.gz: 0343ca1b3cc215a33074d85316cd72bdcfd58aad15f5ef773b920216e3a9c67aaa99973eb4918609b1e6470e8b2c2d554c5868b7251f1a07309692ef1da67009
data/README.md CHANGED
@@ -1,6 +1,6 @@
1
1
  # WorkflowManager
2
2
 
3
- TODO: Write a gem description
3
+ This library is a server/client application through dRuby protocol. Mainly it is expected to be used with [SUSHI](https://github.com/uzh/sushi) and [SushiFabric](https://github.com/uzh/sushi_fabric). However, it is possible to use it independently from [SUSHI](https://github.com/uzh/sushi). The main function is to create a worker thread to observe a submitted job by calling a server side function from a client.
4
4
 
5
5
  ## Installation
6
6
 
@@ -18,7 +18,52 @@ Or install it yourself as:
18
18
 
19
19
  ## Usage
20
20
 
21
- TODO: Write usage instructions here
21
+ Server starts
22
+ ~~~~
23
+ $ workflow_manager -h 16-05-10 15:56
24
+ Usage:
25
+ workflow_manager -d [druby://host:port] -m [development|production]
26
+ -d, --server server workflow manager URI (default: druby://localhost:12345)
27
+ -m, --mode mode development|production (default: development)
28
+ ~~~~
29
+
30
+ At the first execution, automatically the configulation file similar to the one of Ruby on Rails are generated in config directory as follows:
31
+
32
+ config/environments/development.rb
33
+ ~~~~
34
+ #!/usr/bin/env ruby
35
+ # encoding: utf-8
36
+
37
+ WorkflowManager::Server.configure do |config|
38
+ config.log_dir = 'logs'
39
+ config.db_dir = 'dbs'
40
+ config.interval = 30
41
+ config.resubmit = 0
42
+ config.cluster = WorkflowManager::LocalComputer.new('LocalComputer')
43
+ end
44
+ ~~~~
45
+
46
+ After installation, the following client commands become availabe:
47
+
48
+ * wfm_delete_command
49
+ * wfm_get_log
50
+ * wfm_get_script
51
+ * wfm_hello
52
+ * wfm_job_list
53
+ * wfm_kill_job
54
+ * wfm_monitoring
55
+ * wfm_status
56
+
57
+ In order to submit a job script, call wfm_monitoring command:
58
+
59
+ ~~~~
60
+ $ wfm_monitoring -h 16-05-10 16:03
61
+ Usage:
62
+ wfm_monitoring [options] [job_script.sh]
63
+ -u, --user user who submitted? (default: sushi lover)
64
+ -p, --project project project number (default: 1001)
65
+ -d, --server server workflow manager URI (default: druby://localhost:12345)
66
+ ~~~~
22
67
 
23
68
  ## Contributing
24
69
 
data/config/environments/development.rb CHANGED
@@ -6,6 +6,6 @@ WorkflowManager::Server.configure do |config|
6
6
  config.db_dir = 'dbs'
7
7
  config.interval = 30
8
8
  config.resubmit = 0
9
- config.cluster = WorkflowManager::FGCZCluster.new('FGCZCluster')
9
+ config.cluster = WorkflowManager::LocalComputer.new('LocalComputer')
10
10
  end
11
11
 
data/config/environments/production.rb CHANGED
@@ -6,6 +6,6 @@ WorkflowManager::Server.configure do |config|
6
6
  config.db_dir = 'dbs'
7
7
  config.interval = 30
8
8
  config.resubmit = 0
9
- config.cluster = WorkflowManager::LocalComputer.new('local_computer')
9
+ config.cluster = WorkflowManager::FGCZCluster.new('FGCZCluster')
10
10
  end
11
11
 
data/lib/workflow_manager/version.rb CHANGED
@@ -1,3 +1,3 @@
1
1
  module WorkflowManager
2
- VERSION = "0.3.1"
2
+ VERSION = "0.3.2"
3
3
  end
metadata CHANGED
@@ -1,43 +1,47 @@
1
- --- !ruby/object:Gem::Specification
1
+ --- !ruby/object:Gem::Specification
2
2
  name: workflow_manager
3
- version: !ruby/object:Gem::Version
4
- prerelease:
5
- version: 0.3.1
3
+ version: !ruby/object:Gem::Version
4
+ version: 0.3.2
6
5
  platform: ruby
7
- authors:
6
+ authors:
8
7
  - Functional Genomics Center Zurich
9
8
  autorequire:
10
9
  bindir: bin
11
10
  cert_chain: []
12
-
13
- date: 2016-03-31 00:00:00 Z
14
- dependencies:
15
- - !ruby/object:Gem::Dependency
11
+ date: 2016-05-31 00:00:00.000000000 Z
12
+ dependencies:
13
+ - !ruby/object:Gem::Dependency
16
14
  name: bundler
17
- prerelease: false
18
- requirement: &id001 !ruby/object:Gem::Requirement
19
- none: false
20
- requirements:
21
- - - ~>
22
- - !ruby/object:Gem::Version
23
- version: "1.3"
15
+ requirement: !ruby/object:Gem::Requirement
16
+ requirements:
17
+ - - "~>"
18
+ - !ruby/object:Gem::Version
19
+ version: '1.3'
24
20
  type: :development
25
- version_requirements: *id001
26
- - !ruby/object:Gem::Dependency
27
- name: rake
28
21
  prerelease: false
29
- requirement: &id002 !ruby/object:Gem::Requirement
30
- none: false
31
- requirements:
22
+ version_requirements: !ruby/object:Gem::Requirement
23
+ requirements:
24
+ - - "~>"
25
+ - !ruby/object:Gem::Version
26
+ version: '1.3'
27
+ - !ruby/object:Gem::Dependency
28
+ name: rake
29
+ requirement: !ruby/object:Gem::Requirement
30
+ requirements:
32
31
  - - ">="
33
- - !ruby/object:Gem::Version
34
- version: "0"
32
+ - !ruby/object:Gem::Version
33
+ version: '0'
35
34
  type: :development
36
- version_requirements: *id002
35
+ prerelease: false
36
+ version_requirements: !ruby/object:Gem::Requirement
37
+ requirements:
38
+ - - ">="
39
+ - !ruby/object:Gem::Version
40
+ version: '0'
37
41
  description: Workflow Manager manages job submissions using dRuby.
38
- email:
42
+ email:
39
43
  - masaomi.hatakeyama@fgcz.uzh.ch
40
- executables:
44
+ executables:
41
45
  - wfm_delete_command
42
46
  - wfm_get_log
43
47
  - wfm_get_script
@@ -48,12 +52,10 @@ executables:
48
52
  - wfm_status
49
53
  - workflow_manager
50
54
  extensions: []
51
-
52
55
  extra_rdoc_files: []
53
-
54
- files:
55
- - .gitignore
56
- - .rspec
56
+ files:
57
+ - ".gitignore"
58
+ - ".rspec"
57
59
  - Gemfile
58
60
  - LICENSE.txt
59
61
  - README.md
@@ -78,34 +80,31 @@ files:
78
80
  - spec/server_spec.rb
79
81
  - spec/spec_helper.rb
80
82
  - workflow_manager.gemspec
81
- homepage: ""
82
- licenses:
83
+ homepage: ''
84
+ licenses:
83
85
  - MIT
86
+ metadata: {}
84
87
  post_install_message:
85
88
  rdoc_options: []
86
-
87
- require_paths:
89
+ require_paths:
88
90
  - lib
89
- required_ruby_version: !ruby/object:Gem::Requirement
90
- none: false
91
- requirements:
91
+ required_ruby_version: !ruby/object:Gem::Requirement
92
+ requirements:
92
93
  - - ">="
93
- - !ruby/object:Gem::Version
94
- version: "0"
95
- required_rubygems_version: !ruby/object:Gem::Requirement
96
- none: false
97
- requirements:
94
+ - !ruby/object:Gem::Version
95
+ version: '0'
96
+ required_rubygems_version: !ruby/object:Gem::Requirement
97
+ requirements:
98
98
  - - ">="
99
- - !ruby/object:Gem::Version
100
- version: "0"
99
+ - !ruby/object:Gem::Version
100
+ version: '0'
101
101
  requirements: []
102
-
103
102
  rubyforge_project:
104
- rubygems_version: 1.8.23
103
+ rubygems_version: 2.4.5.1
105
104
  signing_key:
106
- specification_version: 3
105
+ specification_version: 4
107
106
  summary: Workflow Manager manages job submissions using dRuby.
108
- test_files:
107
+ test_files:
109
108
  - spec/cluster_spec.rb
110
109
  - spec/server_spec.rb
111
110
  - spec/spec_helper.rb