workflow_manager 0.1.0 → 0.1.1

data/bin/wfm_kill_job

@@ -0,0 +1,25 @@
+#!/usr/bin/env ruby
+# encoding: utf-8
+# 20121112 masa workflow manager client
+Version = '20140516-161420'
+
+require 'drb/drb' 
+require 'workflow_manager/optparse_ex'
+require 'pstore'
+
+opt = OptionParser.new do |o|
+  o.banner = "Usage:\n #{File.basename(__FILE__)} [options]"
+#  o.on(:user, 'sushi lover', '-u user', '--user', 'who submitted?')
+  o.on(:job_id, nil, '-i job_id', '--job_id', 'Job ID')
+  o.on(:server, 'druby://localhost:12345', '-d server', '--server', 'workflow manager URI (default: druby://localhost:12345)')
+  o.parse!(ARGV)
+end
+
+uri = opt.server||'druby://localhost:12345'
+unless job_id = opt.job_id
+  print opt.help
+  exit
+end
+
+workflow_manager = DRbObject.new_with_uri(uri)
+puts workflow_manager.kill_job(job_id)

data/lib/workflow_manager/cluster.rb

@@ -28,6 +28,8 @@ module WorkflowManager
     end
     def copy_commands(org_dir, dest_parent_dir)
     end
+    def kill_command(job_id)
+    end
   end
 
   class LocalComputer < Cluster
@@ -69,6 +71,9 @@ module WorkflowManager
       commands << "cp -r #{org_dir} #{dest_parent_dir}"
       commands
     end
+    def kill_command(job_id)
+      command = "kill #{job_id}"
+    end
   end
 
   class FGCZCluster < Cluster
@@ -111,5 +116,8 @@ module WorkflowManager
     def copy_commands(org_dir, dest_parent_dir)
       commands = ["g-req -w copy #{org_dir} #{dest_parent_dir}"]
     end
+    def kill_command(job_id)
+      command = "qdel #{job_id}"
+    end
   end
 end

data/lib/workflow_manager/server.rb

@@ -110,6 +110,10 @@ module WorkflowManager
     def copy_commands(org_dir, dest_parent_dir)
       @cluster.copy_commands(org_dir, dest_parent_dir)
     end
+    def kill_job(job_id)
+      status(job_id, 'fail')
+      status = `#{@cluster.kill_command(job_id)}`
+    end
     def log_puts(str)
       time = Time.now.strftime("[%Y.%m.%d %H:%M:%S]")
       @mutex.synchronize do

data/lib/workflow_manager/version.rb

@@ -1,3 +1,3 @@
 module WorkflowManager
-  VERSION = "0.1.0"
+  VERSION = "0.1.1"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: workflow_manager
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.1.1
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-01-31 00:00:00.000000000 Z
+date: 2014-05-22 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -51,6 +51,7 @@ executables:
 - wfm_get_script
 - wfm_hello
 - wfm_job_list
+- wfm_kill_job
 - wfm_monitoring
 - wfm_status
 - workflow_manager
@@ -66,6 +67,7 @@ files:
 - bin/wfm_get_script
 - bin/wfm_hello
 - bin/wfm_job_list
+- bin/wfm_kill_job
 - bin/wfm_monitoring
 - bin/wfm_status
 - bin/workflow_manager