virust-locator-ruby 0.2.0 → 0.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +6 -0
- data/lib/virust_locator/locator.rb +7 -4
- data/lib/virust_locator/runnable/virust-locator-aarch64-apple-darwin +0 -0
- data/lib/virust_locator/runnable/virust-locator-aarch64-unknown-linux-gnu +0 -0
- data/lib/virust_locator/runnable/virust-locator-x86_64-apple-darwin +0 -0
- data/lib/virust_locator/runnable/virust-locator-x86_64-pc-windows-gnu.exe +0 -0
- data/lib/virust_locator/runnable/virust-locator-x86_64-unknown-linux-gnu +0 -0
- data/lib/virust_locator/version.rb +1 -1
- metadata +1 -1
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4f707c3b610e396fa91ab80019bd33fef85a11537a02a972952da29d27e5eae5
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data.tar.gz: 4530ebbc8774b4a9729015b2373149ecaa68e74d1bf03406e7adcee75e0e0d90
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: c301755f05d3f6a0e1936a4ad1cbccd7db99f0d66831064f5d1293b899eefb22bb86c169f88de27444480b122659ebd91847c72678724d2dc12573ed25ba8ac9
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data.tar.gz: 253da967570441b088502d3ed70cb11e20d52c71c7b9133208daba4bb1872c80e387b21bda8d5b00df66255f99883f088767a3a5c0f65980da0c67f2f548aa4d
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data/README.md
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@@ -45,6 +45,12 @@ Options:
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## Change Log
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### v0.3.0
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1. Fixed a bug for displaying the aligned sequences.
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2. Now allow multiple sequences to be run at one time. When running multiple sequences in one query (seperate each with [whitespace]), return object is the locator results one line per query.
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### v0.2.0
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1. Fixed a bug for showing the aligned sequences.
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@@ -10,7 +10,7 @@ module VirustLocator
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# Locator.exec("GAAAGCATAGTAATATGGGGAAAGACTCCTAAA")
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# => "3681\t3713\t100\tfalse\tGAAAGCATAGTAATATGGGGAAAGACTCCTAAA\tGAAAGCATAGTAATATGGGGAAAGACTCCTAAA"
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module Locator
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def self.
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def self.init # rubocop:disable Metrics/MethodLength
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file = case RUBY_PLATFORM
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when /arm64-darwin/
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"virust-locator-aarch64-apple-darwin"
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@@ -25,12 +25,15 @@ module VirustLocator
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else
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raise "Unsupported platform: #{RUBY_PLATFORM}"
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end
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-
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file = File.join(File.dirname(__FILE__), "runnable", file)
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safe_file = Shellwords.escape(file)
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raise "Excecutable file not found: #{file}" unless File.exist?(file)
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Shellwords.escape(file)
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end
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def self.exec(query, type = "nt", algorithm = "1", ref = "HXB2")
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safe_file = init
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`#{safe_file} -q #{query} -t #{type} -a #{algorithm} -r #{ref}`.strip
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end
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end
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end
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