viral_seq 1.9.0 → 1.9.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +4 -0
- data/bin/tcs_sdrm +2 -2
- data/lib/viral_seq/pid.rb +1 -4
- data/lib/viral_seq/version.rb +2 -2
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 23960c6236e1230176c5517c4063bf1aa279597582915fca88b0e6ba9d649c75
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data.tar.gz: 33965e6d03949d97be5fc5df871c355135c5cbe7124d5ec179f0e17ca4afe30b
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 7cb163ef4f6fa0ccc486c39fdb34241228611a5ed7c4195ce982936cefbafb041713abcad3688bf8bf88fa326ba679e1f8eed7b8682d1e76ad527f755f71227a
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data.tar.gz: de5f313ba3e76e987e1093dcb3d00bcb212fd5d0dd5118b2022c49807cc1a7ed8f4c92bbf9c2903dbcf7a6df5f654df52a19c21293eaa83709f72b7d30383e18
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data/README.md
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@@ -187,6 +187,10 @@ qc_seqhash.sdrm_hiv_pr(cut_off)
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## Updates
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### Version-1.9.1-12022024
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1. Fixed a bug in the `tcs_sdrm` pipeline.
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### Version-1.9.0-11132024
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1. `ViralSeq::TcsCore::validate_file_name` will not report errors when non-sequence data in the folder, instead these files will be ignored.
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data/bin/tcs_sdrm
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@@ -215,8 +215,8 @@ libs.each do |lib|
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tag = data[0].split("_")[-1].gsub(/\W/,"")
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summary_hash[tag] += "," + data[1].to_f.round(4).to_s + "," + data[2].to_f.round(4).to_s
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end
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regions_for_summary = regions.dup.push("V1V3")
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regions_for_summary.each do |region|
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next unless summary_hash[region]
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seq_summary_out.puts region.to_s + "," + summary_hash[region]
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end
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data/lib/viral_seq/pid.rb
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@@ -14,10 +14,7 @@ module ViralSeq
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nt = ['A','T','C','G']
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pid_pool = ['A','T','C','G']
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(l-1).times do
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pid_pool = pid_pool.product(nt)
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pid_pool.collect! do |v|
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v.join("")
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end
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pid_pool = pid_pool.product(nt).map(&:join)
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end
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return pid_pool
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end # end of .generate_primer_id_pool
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data/lib/viral_seq/version.rb
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metadata
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--- !ruby/object:Gem::Specification
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name: viral_seq
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version: !ruby/object:Gem::Version
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version: 1.9.
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version: 1.9.1
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platform: ruby
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authors:
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- Shuntai Zhou
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@@ -9,7 +9,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2024-
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date: 2024-12-02 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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