viral_seq 1.6.0 → 1.6.1
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- checksums.yaml +4 -4
- data/Gemfile.lock +1 -1
- data/README.md +5 -0
- data/bin/tcs +1 -1
- data/bin/tcs_log +1 -1
- data/lib/viral_seq/version.rb +1 -1
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 53c276c8975ad7b714e69906210e78950a3a6efa593cc56565fcf1b80d41d5db
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4
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data.tar.gz: 6171d3fb2594d2c214b6b94420dee99915e59941e4aeb74cd723bbc9a1d42ab8
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 802ba6aff173d1fdae22f110e75228e2ed8d66ae4147c0e7c12ac2cad0334ca588e3ab23de57bda04bf7dfb33c778b5132c97f2eb58991c82584419ae29b5051
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7
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data.tar.gz: eb40f1364222f459392edc0dd00eba03b417d2236c4c0d2ea75b88b3153f6bf209aaf9ff0e5b28309de4abc33464cc9e9607d8d4b8bef16a9a1965a850a835ef
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data/Gemfile.lock
CHANGED
data/README.md
CHANGED
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@@ -179,6 +179,11 @@ qc_seqhash.sdrm_hiv_pr(cut_off)
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## Updates
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### Version-1.6.1-02022022
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183
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+
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184
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1. Fixed the `nav bar` in tcs_log html file.
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185
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2. Fixed a typo in `tcs`.
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### Version 1.6.0-01042022
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188
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1. Update the `ViralSeq::TcsCore::detection_limit` with pre-calculated values to save processing time.
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data/bin/tcs
CHANGED
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@@ -173,7 +173,7 @@ begin
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173
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unless forward_primer
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log.puts Time.now.to_s + "\t" + region + " does not have forward primer sequence. #{region} skipped."
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end
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-
summary_json[:
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176
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summary_json[:cdna_primer] = cdna_primer
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summary_json[:forward_primer] = forward_primer
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primer[:majority] ? majority_cut_off = primer[:majority] : majority_cut_off = 0
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data/bin/tcs_log
CHANGED
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@@ -613,7 +613,7 @@ html = '
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613
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<body>
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<div style="display: flex; flex-direction: column; height: 100vh; width: 100vw; position: fixed; overflow: hidden;">
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<div style="display: flex; gap: 4px;">
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-
<div id="nav" class="card" style="overflow: auto;
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616
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<div id="nav" class="card" style="overflow: auto; height: 100vh; text-align: left; margin-top: 0;">
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617
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<a href="https://primer-id.org" target="_BLANK">
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618
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<h3 style="margin: 24px; font-weight: 600; color: #333 !important">TCS Log</h3>
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619
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</a>
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data/lib/viral_seq/version.rb
CHANGED
metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: viral_seq
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3
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version: !ruby/object:Gem::Version
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4
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-
version: 1.6.
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4
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version: 1.6.1
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platform: ruby
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authors:
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7
7
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- Shuntai Zhou
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@@ -9,7 +9,7 @@ authors:
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9
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autorequire:
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bindir: bin
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cert_chain: []
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12
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-
date: 2022-
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12
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date: 2022-02-02 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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15
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name: bundler
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