viral_seq 1.2.9 → 1.3.0

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Files changed (5) hide show
  1. checksums.yaml +4 -4
  2. data/README.md +4 -0
  3. data/bin/tcs +5 -1
  4. data/lib/viral_seq/version.rb +1 -1
  5. metadata +2 -2
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data/README.md CHANGED
@@ -179,6 +179,10 @@ qc_seqhash.sdrm_hiv_pr(cut_off)
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  ## Updates
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+ ### Version 1.3.0-08302021
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+
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+ 1. Fixed a bug in the `tcs` pipeline.
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+
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  ### Version 1.2.9-08022021
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  1. Fixed a bug when reading the input primer sequences in lowercases.
data/bin/tcs CHANGED
@@ -401,7 +401,11 @@ begin
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  when 4
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  joined_sh = shp.join2(model: :indiv)
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  end
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- return joined_sh
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+ if joined_sh
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+ return joined_sh
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+ else
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+ joined_sh = ViralSeq::SeqHash.new
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+ end
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  end
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  if primer[:end_join]
data/lib/viral_seq/version.rb CHANGED
@@ -2,6 +2,6 @@
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  # version info and histroy
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  module ViralSeq
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- VERSION = "1.2.9"
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+ VERSION = "1.3.0"
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  TCS_VERSION = "2.3.8"
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  end
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: viral_seq
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  version: !ruby/object:Gem::Version
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- version: 1.2.9
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+ version: 1.3.0
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  platform: ruby
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  authors:
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  - Shuntai Zhou
@@ -9,7 +9,7 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2021-08-02 00:00:00.000000000 Z
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+ date: 2021-08-30 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: bundler