viral_seq 1.2.8 → 1.2.9

checksums.yaml

@@ -1,7 +1,7 @@
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data/README.md

@@ -179,6 +179,11 @@ qc_seqhash.sdrm_hiv_pr(cut_off)
 
 ## Updates
 
+### Version 1.2.9-08022021
+
+  1. Fixed a bug when reading the input primer sequences in lowercases.
+  2. Fix a bug in the method ViralSeq::Math::RandomGaussian
+
 ### Version 1.2.8-07292021
 
   1. Fixed an issue when reading .fastq files containing blank_lines.

data/bin/tcs

@@ -152,8 +152,8 @@ begin
     primer[:region] ? region = primer[:region] : region = "region"
     summary_json[:primer_set_name] = region
 
-    cdna_primer = primer[:cdna]
-    forward_primer = primer[:forward]
+    cdna_primer = primer[:cdna].upcase
+    forward_primer = primer[:forward].upcase
 
     export_raw = primer[:export_raw]
     limit_raw = primer[:limit_raw]

data/lib/viral_seq/math.rb

@@ -31,7 +31,7 @@ module ViralSeq
       def rand
         if (@compute_next_pair = !@compute_next_pair)
           theta = 2 * ::Math::PI * @rng.call
-          scale = @sd * ::Math.sqrt(-2 * Math.log(1 - @rng.call))
+          scale = @sd * ::Math.sqrt(-2 * ::Math.log(1 - @rng.call))
           @g1 = @mean + scale * ::Math.sin(theta)
           @g0 = @mean + scale * ::Math.cos(theta)
         else

data/lib/viral_seq/version.rb

@@ -2,6 +2,6 @@
 # version info and histroy
 
 module ViralSeq
-  VERSION = "1.2.8"
-  TCS_VERSION = "2.3.7"
+  VERSION = "1.2.9"
+  TCS_VERSION = "2.3.8"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: viral_seq
 version: !ruby/object:Gem::Version
-  version: 1.2.8
+  version: 1.2.9
 platform: ruby
 authors:
 - Shuntai Zhou
@@ -9,7 +9,7 @@ authors:
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2021-07-30 00:00:00.000000000 Z
+date: 2021-08-02 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler