viral_seq 1.0.3 → 1.0.4
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- checksums.yaml +4 -4
- data/README.md +5 -0
- data/bin/locator +1 -1
- data/lib/viral_seq/muscle.rb +1 -1
- data/lib/viral_seq/version.rb +1 -1
- metadata +1 -1
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 7f54bac7de0e2ffe1b4eac99b6f325b039a3be19d832926ebf1b280154cd0ad2
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4
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data.tar.gz: f5c5fe62299ec5253c4b8b395816a9158e8d60f428b757161daf209da70b0c0e
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 5c9b7767cbd000c253c7a6f98432e6230adfb6736cf39ced62815443f82f1cee7f446ebabf7791c67675bf37e664f7f4ac9570350894a871ac0310c36844213e
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7
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data.tar.gz: '049d8b2fc82f09ab618d777a2dc6d20922dd6e4c9af8f6c47ca734b8caa46c4fcee10617247404b6ac85c3e31e3d47353c7162b7c6f1df17ec6ce9efb94829a5'
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data/README.md
CHANGED
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@@ -47,6 +47,11 @@ Examine for drug resistance mutations for HIV PR region
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## Updates
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Version 1.0.4-07102019:
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51
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+
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52
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1. Use home directory (Dir.home) instead of the directory of the script file for temp MUSCLE file.
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53
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2. Fix bugs in bin `locator`
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Version 1.0.3-07102019:
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1. Bug fix.
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data/bin/locator
CHANGED
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@@ -52,7 +52,7 @@ def myparser
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return options
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end
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-
puts "\nSequence Locator (RubyGem::ViralSeq)
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puts "\nSequence Locator (RubyGem::ViralSeq) #{ViralSeq::VERSION} by Shuntai Zhou"
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puts "See details at https://github.com/ViralSeq/viral_seq\n"
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puts "Resembling Sequence Locator from LANL (https://www.hiv.lanl.gov/content/sequence/LOCATE/locate.html)\n\n"
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data/lib/viral_seq/muscle.rb
CHANGED
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@@ -38,7 +38,7 @@ module ViralSeq
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# => ["AAGGCGTAGGAC-", "-AAGCTTAGGACG"]
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def self.align(ref_seq = "", test_seq = "", path_to_muscle = false)
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-
temp_dir=
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41
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+
temp_dir = Dir.home
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temp_file = temp_dir + "/_temp_muscle_in"
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temp_aln = temp_dir + "/_temp_muscle_aln"
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name = ">test"
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data/lib/viral_seq/version.rb
CHANGED