viral_seq 0.3.0 → 0.3.1

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data/README.md

@@ -1,34 +1,22 @@
 # viral_seq
 
-## Installation
-
-Add this line to your application's Gemfile:
-
-```ruby
-gem 'ViralSeq'
-```
-
-And then execute:
-
-    $ bundle
+A Ruby Gem containing bioinformatics tools for processing viral NGS data.
+Specifically for Primer-ID sequencing and HIV drug resistance analysis.
 
-Or install it yourself as:
+## Installation
 
     $ gem install viral_seq
 
 ## Usage
 
-TODO: Write usage instructions here
-
-## Development
+Load all ViralSeq classes by requiring 'viral_seq.rb'
 
-After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
+    #!/usr/bin/env ruby
+    require 'viral_seq'
 
-To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
-
-## Contributing
+## Development
 
-Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/viral_seq. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](http://contributor-covenant.org) code of conduct.
+Bug reports and pull requests are welcome on GitHub at https://github.com/ViralSeq/viral_seq. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](http://contributor-covenant.org) code of conduct.
 
 ## License
 
@@ -36,4 +24,4 @@ The gem is available as open source under the terms of the [MIT License](https:/
 
 ## Code of Conduct
 
-Everyone interacting in the viral_seq project’s codebases, issue trackers, chat rooms and mailing lists is expected to follow the [code of conduct](https://github.com/[USERNAME]/viral_seq/blob/master/CODE_OF_CONDUCT.md).
+Everyone interacting in the viral_seq project’s codebases, issue trackers, chat rooms and mailing lists is expected to follow the [code of conduct](https://github.com/ViralSeq/viral_seq/blob/master/CODE_OF_CONDUCT.md).

data/lib/viral_seq/version.rb

@@ -2,5 +2,5 @@
 # version info and histroy
 
 module ViralSeq
-  VERSION = "0.3.0"
+  VERSION = "0.3.1"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: viral_seq
 version: !ruby/object:Gem::Version
-  version: 0.3.0
+  version: 0.3.1
 platform: ruby
 authors:
 - Shuntai Zhou