vcf 0.0.2 → 0.0.3
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- data/lib/vcf.rb +5 -1
- metadata +3 -3
data/lib/vcf.rb
CHANGED
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@@ -8,6 +8,10 @@ public
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|
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8
8
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parse_line(line, sample_names) if line != nil
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|
9
9
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end
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|
10
10
|
|
|
11
|
+
def int_or_raw(x)
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|
12
|
+
Integer.new(x) rescue x
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|
13
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+
end
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|
14
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+
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|
11
15
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def parse_line(line, sample_names=nil)
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|
12
16
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f = line.chomp.split("\t", -1)
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|
13
17
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raise "VCF lines must have at least 8 fields" if f.size < 8
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@@ -16,7 +20,7 @@ public
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|
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16
20
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@id = f[2]
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17
21
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@ref = f[3]
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|
18
22
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@alt = f[4]
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|
19
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-
@qual = f[5]
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|
23
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+
@qual = int_or_raw(f[5])
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20
24
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@filter = f[6]
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21
25
|
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22
26
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@info = {}
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metadata
CHANGED
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@@ -2,7 +2,7 @@
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|
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2
2
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name: vcf
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|
3
3
|
version: !ruby/object:Gem::Version
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|
4
4
|
prerelease:
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|
5
|
-
version: 0.0.
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|
5
|
+
version: 0.0.3
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|
6
6
|
platform: ruby
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|
7
7
|
authors:
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|
8
8
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- Jesse Rodriguez
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@@ -10,10 +10,10 @@ autorequire:
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|
|
10
10
|
bindir: bin
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|
11
11
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cert_chain: []
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|
12
12
|
|
|
13
|
-
date: 2011-
|
|
13
|
+
date: 2011-08-31 00:00:00 Z
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|
14
14
|
dependencies: []
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|
15
15
|
|
|
16
|
-
description: Lightweight VCF interface for ruby
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|
16
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+
description: Lightweight VCF (Variant Call Format) interface for ruby
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|
17
17
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email: jesserod@cs.stanford.edu
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|
18
18
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executables: []
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|
19
19
|
|