vcf 0.0.2 → 0.0.3
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- data/lib/vcf.rb +5 -1
- metadata +3 -3
data/lib/vcf.rb
CHANGED
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@@ -8,6 +8,10 @@ public
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8
8
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parse_line(line, sample_names) if line != nil
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9
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end
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10
10
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11
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+
def int_or_raw(x)
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12
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+
Integer.new(x) rescue x
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end
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14
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+
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11
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def parse_line(line, sample_names=nil)
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12
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f = line.chomp.split("\t", -1)
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raise "VCF lines must have at least 8 fields" if f.size < 8
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@@ -16,7 +20,7 @@ public
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@id = f[2]
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@ref = f[3]
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@alt = f[4]
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19
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-
@qual = f[5]
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23
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+
@qual = int_or_raw(f[5])
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20
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@filter = f[6]
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@info = {}
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metadata
CHANGED
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@@ -2,7 +2,7 @@
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name: vcf
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3
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version: !ruby/object:Gem::Version
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prerelease:
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5
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-
version: 0.0.
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5
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+
version: 0.0.3
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platform: ruby
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authors:
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- Jesse Rodriguez
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@@ -10,10 +10,10 @@ autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2011-
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+
date: 2011-08-31 00:00:00 Z
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dependencies: []
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-
description: Lightweight VCF interface for ruby
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+
description: Lightweight VCF (Variant Call Format) interface for ruby
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email: jesserod@cs.stanford.edu
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executables: []
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