unipept 3.0.0 → 3.0.1

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Files changed (6) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile +3 -0
  3. data/Gemfile.lock +1 -0
  4. data/VERSION +1 -1
  5. data/unipept.gemspec +6 -4
  6. metadata +17 -3
checksums.yaml CHANGED
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data/Gemfile CHANGED
@@ -4,6 +4,9 @@ source 'http://rubygems.org'
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  gem 'cri', '~>2.15.10'
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  gem 'typhoeus', '~> 1.3.1'
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+ # this is not explicitly used, but an older incompatible version comes bundled with ruby
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+ gem 'psych', '~> 4.0.3'
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+
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  group :development do
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  gem 'minitest', '~> 5.14'
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  gem 'rake', '~> 13.0.1'
data/Gemfile.lock CHANGED
@@ -97,6 +97,7 @@ DEPENDENCIES
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  cri (~> 2.15.10)
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  juwelier
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  minitest (~> 5.14)
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+ psych (~> 4.0.3)
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  rake (~> 13.0.1)
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  rubocop (~> 1.11)
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  typhoeus (~> 1.3.1)
data/VERSION CHANGED
@@ -1 +1 @@
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- 3.0.0
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+ 3.0.1
data/unipept.gemspec CHANGED
@@ -2,16 +2,16 @@
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  # DO NOT EDIT THIS FILE DIRECTLY
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  # Instead, edit Juwelier::Tasks in Rakefile, and run 'rake gemspec'
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  # -*- encoding: utf-8 -*-
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- # stub: unipept 3.0.0 ruby lib
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+ # stub: unipept 3.0.1 ruby lib
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  Gem::Specification.new do |s|
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  s.name = "unipept".freeze
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- s.version = "3.0.0"
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+ s.version = "3.0.1"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
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  s.require_paths = ["lib".freeze]
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  s.authors = ["Bart Mesuere".freeze, "Pieter Verschaffelt".freeze, "Toon Willems".freeze, "Tom Naessens".freeze]
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- s.date = "2022-04-14"
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+ s.date = "2022-04-27"
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  s.description = " Command line interface to the Unipept (http://unipept.ugent.be) web services\n (pept2lca, taxa2lca, pept2taxa, pept2prot and taxonomy) and some utility\n commands for handling proteins using the command line.\n".freeze
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  s.email = "unipept@ugent.be".freeze
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  s.executables = ["unipept".freeze, "prot2pept".freeze, "peptfilter".freeze, "uniprot".freeze]
@@ -105,7 +105,7 @@ Gem::Specification.new do |s|
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  s.homepage = "http://unipept.ugent.be".freeze
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  s.licenses = ["MIT".freeze]
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  s.required_ruby_version = Gem::Requirement.new(">= 2.6.0".freeze)
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- s.rubygems_version = "3.1.4".freeze
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+ s.rubygems_version = "3.2.15".freeze
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  s.summary = "Command line interface to Unipept web services.".freeze
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  if s.respond_to? :specification_version then
@@ -115,12 +115,14 @@ Gem::Specification.new do |s|
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  if s.respond_to? :add_runtime_dependency then
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  s.add_runtime_dependency(%q<cri>.freeze, ["~> 2.15.10"])
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  s.add_runtime_dependency(%q<typhoeus>.freeze, ["~> 1.3.1"])
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+ s.add_runtime_dependency(%q<psych>.freeze, ["~> 4.0.3"])
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  s.add_development_dependency(%q<minitest>.freeze, ["~> 5.14"])
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  s.add_development_dependency(%q<rake>.freeze, ["~> 13.0.1"])
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  s.add_development_dependency(%q<rubocop>.freeze, ["~> 1.11"])
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  else
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  s.add_dependency(%q<cri>.freeze, ["~> 2.15.10"])
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  s.add_dependency(%q<typhoeus>.freeze, ["~> 1.3.1"])
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+ s.add_dependency(%q<psych>.freeze, ["~> 4.0.3"])
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  s.add_dependency(%q<minitest>.freeze, ["~> 5.14"])
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  s.add_dependency(%q<rake>.freeze, ["~> 13.0.1"])
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  s.add_dependency(%q<rubocop>.freeze, ["~> 1.11"])
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: unipept
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  version: !ruby/object:Gem::Version
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- version: 3.0.0
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+ version: 3.0.1
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  platform: ruby
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  authors:
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  - Bart Mesuere
@@ -11,7 +11,7 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2022-04-14 00:00:00.000000000 Z
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+ date: 2022-04-27 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: cri
@@ -41,6 +41,20 @@ dependencies:
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: 1.3.1
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+ - !ruby/object:Gem::Dependency
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+ name: psych
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: 4.0.3
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: 4.0.3
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  - !ruby/object:Gem::Dependency
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  name: minitest
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  requirement: !ruby/object:Gem::Requirement
@@ -198,7 +212,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
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- rubygems_version: 3.1.4
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+ rubygems_version: 3.2.15
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  signing_key:
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  specification_version: 4
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  summary: Command line interface to Unipept web services.