unipept 0.4.1 → 0.4.2
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/unipept +5 -4
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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---
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2
2
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SHA1:
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|
3
|
-
metadata.gz:
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|
4
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-
data.tar.gz:
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|
3
|
+
metadata.gz: eadba0bac0ca2f5d8dbbbceffe168f26c621cd86
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|
4
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+
data.tar.gz: 5115330bf9a71bfabfa9ac78c852769c9299a51d
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5
5
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SHA512:
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|
6
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-
metadata.gz:
|
|
7
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-
data.tar.gz:
|
|
6
|
+
metadata.gz: c03d75460bbb446335ce708e3602b5edb327434f4e427deb6097231be446e9ecb004bf0f31bcc7034026e685690eb900128ba5b7a6148cc269ea6407397d2ce2
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|
7
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+
data.tar.gz: 8d83ec62c72179ec629777c54dee5f8b41db8ecedcdc3ddd9b5ec82b419c7e99592bc5ab54cd83b85f0a307d8156c7f5a85f4d12168b4036b200dd7aaadbdc75
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data/VERSION
CHANGED
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@@ -1 +1 @@
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|
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1
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-
0.4.
|
|
1
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+
0.4.2
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data/bin/unipept
CHANGED
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@@ -28,7 +28,6 @@ class ApiRunner < Cri::CommandRunner
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|
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28
28
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@message_url = "#{host}/api/v1/messages.json"
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|
29
29
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end
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|
30
30
|
|
|
31
|
-
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32
31
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def mapping
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|
33
32
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{'pept2taxa' => 'pept2taxa', 'pept2lca' => 'pept2lca'}
|
|
34
33
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end
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@@ -94,7 +93,8 @@ class ApiRunner < Cri::CommandRunner
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|
|
94
93
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request = Typhoeus::Request.new(
|
|
95
94
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@url,
|
|
96
95
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method: :post,
|
|
97
|
-
body: url_options(sub_division)
|
|
96
|
+
body: url_options(sub_division),
|
|
97
|
+
accept_encoding: "gzip"
|
|
98
98
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)
|
|
99
99
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request.on_complete do |resp|
|
|
100
100
|
if resp.timed_out?
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@@ -107,7 +107,9 @@ class ApiRunner < Cri::CommandRunner
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|
|
107
107
|
|
|
108
108
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sub_result.map! {|r| r.select! {|k,v| filter_list.any? {|f| f.match k } } } if ! filter_list.empty?
|
|
109
109
|
|
|
110
|
-
|
|
110
|
+
if options[:xml]
|
|
111
|
+
result << sub_result
|
|
112
|
+
end
|
|
111
113
|
|
|
112
114
|
# wait till it's our turn to write
|
|
113
115
|
batch_order.wait(i) do
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|
@@ -139,7 +141,6 @@ class ApiRunner < Cri::CommandRunner
|
|
|
139
141
|
|
|
140
142
|
hydra.run
|
|
141
143
|
|
|
142
|
-
|
|
143
144
|
begin
|
|
144
145
|
download_xml(result)
|
|
145
146
|
rescue
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metadata
CHANGED
|
@@ -1,14 +1,14 @@
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|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: unipept
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.4.
|
|
4
|
+
version: 0.4.2
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
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|
7
7
|
- Toon Willems
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2014-05-
|
|
11
|
+
date: 2014-05-14 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: shoulda
|