unipept 0.3.1 → 0.3.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/unipept +5 -4
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 600ed2755ace1b8b8b617e9e0065ee94ba7ca54a
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4
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data.tar.gz: 2a243e1447775619c9647e8686392dda876d9531
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5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 05527d12256c915151a261e29ab6be21bce9f787ed004b9607e4b63f76bc4b8d1d0224933e32702915bd90ac663779f8b626f44d36d69759d1ca8a70885b3dea
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7
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data.tar.gz: cb2590b866380a7658827e615598bbe640004bfe5d19cc72160cc8081da37f57c8dafde1bf181ecf475f0ac69c66db4aad13011d33336688225282818d06db86
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.3.
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1
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+
0.3.2
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data/bin/unipept
CHANGED
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@@ -78,7 +78,7 @@ class ApiRunner < Cri::CommandRunner
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hydra = Typhoeus::Hydra.new(max_concurrency: 20)
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num_req = 0
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81
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-
peptide_iterator(peptides)
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81
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+
peptide_iterator(peptides) do |sub_division, i|
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if $interupted
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$stdin.close
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exit 1
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@@ -159,7 +159,7 @@ class ApiRunner < Cri::CommandRunner
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end
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def peptide_iterator(peptides, &block)
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-
peptides.each_slice(batch_size
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peptides.each_slice(batch_size).with_index(&block)
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end
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private
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@@ -181,7 +181,7 @@ class Taxa2lca < ApiRunner
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end
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def peptide_iterator(peptides, &block)
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block.call(peptides.to_a)
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block.call(peptides.to_a, 0)
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end
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def batch_size
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@@ -197,7 +197,7 @@ class Pept2prot < ApiRunner
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end
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def url_options(sub_part)
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-
{:sequences => sub_part, :equate_il => options[:equate]}
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{:sequences => sub_part, :equate_il => options[:equate], :extra => options[:all]}
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end
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def download_xml(result)
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@@ -294,6 +294,7 @@ root_cmd.define_command('pept2prot') do
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flag :e, :equate, "equate I and L"
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option :s, :select, "select the attributes", :argument => :required, :multiple => true
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option :x, :xml, "download uniprot record in specified directory", :argument => :required
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flag :a, :all, "include all information. WARNING: will take much longer!"
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runner Pept2prot
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: unipept
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version: !ruby/object:Gem::Version
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version: 0.3.
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version: 0.3.2
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platform: ruby
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authors:
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- Toon Willems
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2014-05-
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date: 2014-05-07 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: shoulda
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