unipept 0.2.0 → 0.2.1
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/unipept +11 -2
- metadata +2 -2
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: a5a71603248346c391236d3c403bef0ecd240399
|
|
4
|
+
data.tar.gz: d8d91d4254c7c6b86be958cb0b10e2a4665c8b4f
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: b6c359618d1603f0f871b93f24cfc6aa8c08d5f14010622749a2abce4b9e05b713ac865dd61074c3f607c931714f29684cdb7ab40fb1f2e30f40aca8e781506a
|
|
7
|
+
data.tar.gz: 17b7aa1681f7dbec7068d5313d26e4c156b2a0311f67dd2b5abc22924ede1a0280cad6e9e07593cadacd844cbfe072ec7730b677e0baa61741dda44e3926c2ef
|
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.2.
|
|
1
|
+
0.2.1
|
data/bin/unipept
CHANGED
|
@@ -58,7 +58,12 @@ class ApiRunner < Cri::CommandRunner
|
|
|
58
58
|
result = []
|
|
59
59
|
peptides.each_slice(self.batch_size) do |sub_division|
|
|
60
60
|
|
|
61
|
-
|
|
61
|
+
begin
|
|
62
|
+
sub_result = JSON[Faraday.post(@url, url_options(sub_division)).body]
|
|
63
|
+
rescue
|
|
64
|
+
puts "API endpoint gave an error, exiting."
|
|
65
|
+
exit 1
|
|
66
|
+
end
|
|
62
67
|
|
|
63
68
|
sub_result = [sub_result] if not sub_result.kind_of? Array
|
|
64
69
|
|
|
@@ -69,7 +74,11 @@ class ApiRunner < Cri::CommandRunner
|
|
|
69
74
|
progress.progress += sub_division.size
|
|
70
75
|
end
|
|
71
76
|
|
|
72
|
-
|
|
77
|
+
begin
|
|
78
|
+
download_xml(result)
|
|
79
|
+
rescue
|
|
80
|
+
puts "Something went wrong while downloading xml information! please check the output"
|
|
81
|
+
end
|
|
73
82
|
|
|
74
83
|
result = formatter.format(result)
|
|
75
84
|
if options[:output]
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: unipept
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.2.
|
|
4
|
+
version: 0.2.1
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Toon Willems
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2014-04-
|
|
11
|
+
date: 2014-04-11 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: shoulda
|