ulla 0.9.4 → 0.9.5

data/History.txt

@@ -1,3 +1,7 @@
+== 0.9.5 18/03/2009
+
+* Fixed a bug in the order of requiring libraries
+
 == 0.9.4 18/03/2009
 
 * Fixed a bug for environment label and residue name when --cys 2 is set

data/Manifest.txt

@@ -7,11 +7,13 @@ Rakefile
 bin/ulla
 config/website.yml
 config/website.yml.sample
+lib/.nmatrix_extensions.rb.swp
 lib/math_extensions.rb
 lib/narray_extensions.rb
 lib/nmatrix_extensions.rb
 lib/string_extensions.rb
 lib/ulla.rb
+lib/ulla/.cli.rb.swp
 lib/ulla/cli.rb
 lib/ulla/environment.rb
 lib/ulla/environment_class_hash.rb

data/lib/ulla.rb

@@ -2,5 +2,5 @@ $:.unshift(File.dirname(__FILE__)) unless
   $:.include?(File.dirname(__FILE__)) || $:.include?(File.expand_path(File.dirname(__FILE__)))
 
 module Ulla
-  VERSION = '0.9.4'
+  VERSION = '0.9.5'
 end

data/lib/ulla/cli.rb

@@ -6,17 +6,6 @@ require 'bio'
 require 'set'
 require 'facets'
 
-require 'math_extensions'
-require 'string_extensions'
-require 'narray_extensions'
-require 'nmatrix_extensions'
-
-require 'ulla/environment'
-require 'ulla/environment_class_hash'
-require 'ulla/environment_feature'
-require 'ulla/environment_feature_array'
-require 'ulla/heatmap_array'
-
 # This is a module for an actual command line interpreter for Ulla
 # ---
 # Copyright (C) 2008-9 Semin Lee
@@ -362,6 +351,17 @@ Options:
           exit 1
         end
 
+	require 'math_extensions'
+	require 'string_extensions'
+	require 'narray_extensions'
+	require 'nmatrix_extensions'
+
+	require 'ulla/environment'
+	require 'ulla/environment_class_hash'
+	require 'ulla/environment_feature'
+	require 'ulla/environment_feature_array'
+	require 'ulla/heatmap_array'
+
         #
         # Part 2 END
         #

data/ulla.gemspec

@@ -2,7 +2,7 @@
 
 Gem::Specification.new do |s|
   s.name = %q{ulla}
-  s.version = "0.9.4"
+  s.version = "0.9.5"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Semin Lee"]
@@ -12,7 +12,7 @@ Gem::Specification.new do |s|
   s.email = ["seminlee@gmail.com"]
   s.executables = ["ulla"]
   s.extra_rdoc_files = ["History.txt", "Manifest.txt", "PostInstall.txt", "README.rdoc", "website/index.txt"]
-  s.files = [".autotest", "History.txt", "Manifest.txt", "PostInstall.txt", "README.rdoc", "Rakefile", "bin/ulla", "config/website.yml", "config/website.yml.sample", "lib/math_extensions.rb", "lib/narray_extensions.rb", "lib/nmatrix_extensions.rb", "lib/string_extensions.rb", "lib/ulla.rb", "lib/ulla/cli.rb", "lib/ulla/environment.rb", "lib/ulla/environment_class_hash.rb", "lib/ulla/environment_feature.rb", "lib/ulla/environment_feature_array.rb", "lib/ulla/heatmap_array.rb", "script/console", "script/destroy", "script/generate", "script/txt2html", "test/test_helper.rb", "test/test_math_extensions.rb", "test/test_narray_extensions.rb", "test/test_nmatrix_extensions.rb", "test/test_string_extensions.rb", "test/test_ulla.rb", "test/ulla/test_cli.rb", "test/ulla/test_environment_class_hash.rb", "test/ulla/test_environment_feature.rb", "ulla.gemspec", "website/index.html", "website/index.txt", "website/javascripts/rounded_corners_lite.inc.js", "website/stylesheets/screen.css", "website/template.html.erb"]
+  s.files = [".autotest", "History.txt", "Manifest.txt", "PostInstall.txt", "README.rdoc", "Rakefile", "bin/ulla", "config/website.yml", "config/website.yml.sample", "lib/.nmatrix_extensions.rb.swp", "lib/math_extensions.rb", "lib/narray_extensions.rb", "lib/nmatrix_extensions.rb", "lib/string_extensions.rb", "lib/ulla.rb", "lib/ulla/.cli.rb.swp", "lib/ulla/cli.rb", "lib/ulla/environment.rb", "lib/ulla/environment_class_hash.rb", "lib/ulla/environment_feature.rb", "lib/ulla/environment_feature_array.rb", "lib/ulla/heatmap_array.rb", "script/console", "script/destroy", "script/generate", "script/txt2html", "test/test_helper.rb", "test/test_math_extensions.rb", "test/test_narray_extensions.rb", "test/test_nmatrix_extensions.rb", "test/test_string_extensions.rb", "test/test_ulla.rb", "test/ulla/test_cli.rb", "test/ulla/test_environment_class_hash.rb", "test/ulla/test_environment_feature.rb", "ulla.gemspec", "website/index.html", "website/index.txt", "website/javascripts/rounded_corners_lite.inc.js", "website/stylesheets/screen.css", "website/template.html.erb"]
   s.has_rdoc = true
   s.homepage = %q{http://www-cryst.bioc.cam.ac.uk/ulla}
   s.post_install_message = %q{PostInstall.txt}

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification 
 name: ulla
 version: !ruby/object:Gem::Version 
-  version: 0.9.4
+  version: 0.9.5
 platform: ruby
 authors: 
 - Semin Lee
@@ -95,11 +95,13 @@ files:
 - bin/ulla
 - config/website.yml
 - config/website.yml.sample
+- lib/.nmatrix_extensions.rb.swp
 - lib/math_extensions.rb
 - lib/narray_extensions.rb
 - lib/nmatrix_extensions.rb
 - lib/string_extensions.rb
 - lib/ulla.rb
+- lib/ulla/.cli.rb.swp
 - lib/ulla/cli.rb
 - lib/ulla/environment.rb
 - lib/ulla/environment_class_hash.rb