uds_plus_test_kit 1.2.0 → 1.2.1
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- checksums.yaml +4 -4
- data/lib/uds_plus_test_kit/examples/adverse_event.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/allergy_intollerance.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/condition.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/coverage.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/data_urls.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/encounter.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/immunization.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/medication_request.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/medication_statement.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/observation.ndjson +6 -6
- data/lib/uds_plus_test_kit/examples/patient.ndjson +3 -3
- data/lib/uds_plus_test_kit/examples/procedure.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/related_person.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/reporting_parameters.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/service_request.ndjson +1 -1
- data/lib/uds_plus_test_kit/input_resource_tests/resource_group.rb +0 -8
- data/lib/uds_plus_test_kit/manifest_tests/invalid_type_test.rb +49 -0
- data/lib/uds_plus_test_kit/manifest_tests/uds_plus_test_group.rb +0 -4
- data/lib/uds_plus_test_kit/metadata.rb +1 -1
- data/lib/uds_plus_test_kit/post_tests/post_group.rb +0 -4
- data/lib/uds_plus_test_kit/uds_plus_test_suite.rb +4 -4
- data/lib/uds_plus_test_kit/version.rb +3 -3
- metadata +2 -6
- data/lib/uds_plus_test_kit/input_resource_tests/read_sexual_orientation_test.rb +0 -54
- data/lib/uds_plus_test_kit/input_resource_tests/read_special_observation_test.rb +0 -54
- data/lib/uds_plus_test_kit/validate_sexual_orientation_test.rb +0 -65
- data/lib/uds_plus_test_kit/validate_special_observation_test.rb +0 -72
checksums.yaml
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metadata.gz:
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metadata.gz: 8577615763a082132d66bd35a606d219a74f9603774581a33beba1c4fca3e6b9
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data.tar.gz: 0c04809dd2c69f3aa7247a837d9a08fa01c1aa16c907bcf3b2cb42f935ba6825
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metadata.gz: 11c93cf4c4b9a40ea420ecd94191b97d5dd73e778c13d354b0fee2b8176b9e1f2fd16e1685adfacd0a74310e24fca51885d197d683ab69f3922a3ca112d262a8
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data.tar.gz: bb43e3a57cf937a8c5a77eb87a36fb715b06cbbf5a78c770c4dac04a406f9d5668197a248933a51d6e65143c768dd8a54e2dc58efa8273b5703b303c8f92b459
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{"resourceType":"AdverseEvent","id":"de-identified-example","meta":{"lastUpdated":"2017-05-26T11:56:57.250-04:00","profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-adverseevent"]},"actuality":"actual","category":[{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/adverse-event-category","code":"medication-mishap","display":"Medication Mishap"}],"text":"Medication Mishap - Wrong Dose"}],"event":{"coding":[{"system":"http://snomed.info/sct","code":"140004","display":"Chronic Pharyngitis"}],"text":"Chronic Pharyngitis"},"subject":{"reference":"Patient/de-identified-example"},"date":"2015","recordedDate":"2017"}
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{ "resourceType" : "AdverseEvent", "id" : "de-identified-example", "meta" : { "lastUpdated" : "2017-05-26T11:56:57.250-04:00", "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-adverseevent"] }, "actuality" : "actual", "category" : [{ "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/adverse-event-category", "code" : "medication-mishap", "display" : "Medication Mishap" }], "text" : "Medication Mishap - Wrong Dose" }], "event" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "140004", "display" : "Chronic Pharyngitis" }], "text" : "Chronic Pharyngitis" }, "subject" : { "reference" : "Patient/de-identified-example" }, "date" : "2015", "detected" : "2030", "recordedDate" : "2017" }
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{"resourceType":"AllergyIntolerance","id":"de-identified-example","meta":{"lastUpdated":"2017-05-26T11:56:57.250-04:00","profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-allergyintolerance"]},"clinicalStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/allergyintolerance-clinical","code":"active"}]},"verificationStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/allergyintolerance-verification","code":"confirmed"}]},"category":["medication"],"criticality":"high","code":{"coding":[{"system":"http://snomed.info/sct","code":"387406002","display":"Sulfonamide (substance)"}],"text":"sulfonamide antibacterial"},"patient":{"reference":"Patient/de-identified-example"},"onsetDateTime":"2015","recordedDate":"2017","reaction":[{"manifestation":[{"coding":[{"system":"http://snomed.info/sct","code":"271807003","display":"skin rash"}],"text":"skin rash"}],"severity":"mild"}]}
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{ "resourceType" : "AllergyIntolerance", "id" : "de-identified-example", "meta" : { "lastUpdated" : "2017-05-26T11:56:57.250-04:00", "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-allergyintolerance"] }, "clinicalStatus" : { "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/allergyintolerance-clinical", "code" : "active" }] }, "verificationStatus" : { "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/allergyintolerance-verification", "code" : "confirmed" }] }, "category" : ["medication"], "criticality" : "high", "code" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "387406002", "display" : "Sulfonamide (substance)" }], "text" : "sulfonamide antibacterial" }, "patient" : { "reference" : "Patient/de-identified-example" }, "onsetDateTime" : "2015", "recordedDate" : "2017", "reaction" : [{ "manifestation" : [{ "coding" : [{ "system" : "http://snomed.info/sct", "code" : "271807003", "display" : "skin rash" }], "text" : "skin rash" }], "severity" : "mild" }]}
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{"resourceType":"Condition","id":"de-identified-example","meta":{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/instance-name","valueString":"De-identified Diagnosis Example"},{"url":"http://hl7.org/fhir/StructureDefinition/instance-description","valueMarkdown":"This example of a UDS+ Diagnosis profile which illustrates its use to capture de-identified information about a patient's diagnosis."}],"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-diagnosis"]},"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/condition-assertedDate","valueDateTime":"2007"}],"clinicalStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/condition-clinical","code":"active","display":"Active"}]},"verificationStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/condition-ver-status","code":"confirmed","display":"Confirmed"}]},"category":[{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/condition-category","code":"problem-list-item","display":"Problem List Item"}]}],"code":{"coding":[{"system":"http://hl7.org/fhir/sid/icd-10-cm","code":"B18.2","display":"Chronic viral hepatitis C"}]},"subject":{"reference":"Patient/de-identified-example"},"onsetDateTime":"2007","recordedDate":"2007"}
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{ "resourceType" : "Condition", "id" : "de-identified-example", "meta" : { "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString" : "De-identified Diagnosis Example" }, { "url" : "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown" : "This example of a UDS+ Diagnosis profile which illustrates its use to capture de-identified information about a patient's diagnosis." }], "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-diagnosis"] }, "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/condition-assertedDate", "valueDateTime" : "2007" }], "clinicalStatus" : { "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical", "code" : "active", "display" : "Active" }] }, "verificationStatus" : { "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/condition-ver-status", "code" : "confirmed", "display" : "Confirmed" }] }, "category" : [{ "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/condition-category", "code" : "problem-list-item", "display" : "Problem List Item" }] }], "code" : { "coding" : [{ "system" : "http://hl7.org/fhir/sid/icd-10-cm", "code" : "B18.2", "display" : "Chronic viral hepatitis C" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "onsetDateTime" : "2007", "recordedDate" : "2007"}
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{
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{ "resourceType" : "Coverage", "id" : "de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-coverage"] }, "extension" : [{ "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-capitated-member-months-extension", "valueQuantity" : { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-feeforservice-member-months-extension", "valueQuantity" : { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }], "status" : "active", "type" : { "coding" : [{ "system" : "http://fhir.org/guides/hrsa/uds-plus/CodeSystem/uds-plus-insurance-codes", "code" : "private-insurance", "display" : "Private Insurance" }] }, "beneficiary" : { "reference" : "Patient/de-identified-example" }, "period" : { "start" : "2019", "end" : "2023" }, "payor" : [{ "reference" : "Organization/acme-payer" }]}
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{
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{ "resourceType" : "Parameters", "id" : "de-identify-data-operation-urls-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-deidentify-operation-data-urls-parameter"] }, "parameter" : [{ "name" : "format", "valueCode" : "fhir+ndjson" }, { "name" : "udsData", "part" : [{ "name" : "resourceType", "valueCode" : "Patient" }, { "name" : "resourceUrl", "valueUrl" : "http://example.com/Patient.ndjson" }] }]}
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{"resourceType":"Encounter","id":"de-identified-example","meta":{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/instance-name","valueString":"De-Identified Encounter Example"},{"url":"http://hl7.org/fhir/StructureDefinition/instance-description","valueMarkdown":"This is an encounter example for the *US Core Encounter Profile*."}],"lastUpdated":"2022-05-26T11:56:57.250-04:00","profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-encounter"]},"extension":[{"url":"http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-age-extension","valueQuantity":{"value":36,"unit":"yr","system":"http://unitsofmeasure.org","code":"a"}}],"status":"finished","class":{"system":"http://terminology.hl7.org/CodeSystem/v3-ActCode","code":"AMB","display":"ambulatory"},"type":[{"coding":[{"system":"http://www.ama-assn.org/go/cpt","code":"99202"}]}],"subject":{"reference":"Patient/de-identified-example"},"period":{"start":"2022","end":"2022"},"hospitalization":{"dischargeDisposition":{"coding":[{"system":"http://www.nubc.org/patient-discharge","code":"01","display":"Discharged to Home"}]}},"location":[{"location":{"reference":"Location/hospital","display":"Holy Family Hospital"}}]}
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{ "resourceType" : "Encounter", "id" : "de-identified-example", "meta" : { "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString" : "De-Identified Encounter Example" }, { "url" : "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown" : "This is an encounter example for the *US Core Encounter Profile*." }], "lastUpdated" : "2022-05-26T11:56:57.250-04:00", "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-encounter"] }, "extension" : [{ "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity" : { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }], "status" : "finished", "class" : { "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", "code" : "AMB", "display" : "ambulatory" }, "type" : [{ "coding" : [{ "system" : "http://www.ama-assn.org/go/cpt", "code" : "99202" }] }], "subject" : { "reference" : "Patient/de-identified-example" }, "period" : { "start" : "2022", "end" : "2022" }, "hospitalization" : { "dischargeDisposition" : { "coding" : [{ "system" : "http://www.nubc.org/patient-discharge", "code" : "01", "display" : "Discharged to Home" }] } }, "location" : [{ "location" : { "reference" : "Location/hospital", "display" : "Holy Family Hospital" } }]}
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{"resourceType":"Immunization","id":"de-identified-example","meta":{"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-immunization"]},"status":"completed","statusReason":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/condition-category","code":"encounter-diagnosis","display":"Encounter Diagnosis"}]},"vaccineCode":{"coding":[{"system":"http://hl7.org/fhir/sid/cvx","code":"197","display":"influenza, high-dose, quadrivalent"}]},"patient":{"reference":"Patient/de-identified-example"},"occurrenceDateTime":"2023","recorded":"2023","primarySource":true}
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{ "resourceType" : "Immunization", "id" : "de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-immunization"] }, "status" : "completed", "statusReason" : { "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/condition-category", "code" : "encounter-diagnosis", "display" : "Encounter Diagnosis" }] }, "vaccineCode" : { "coding" : [{ "system" : "http://hl7.org/fhir/sid/cvx", "code" : "197", "display" : "influenza, high-dose, quadrivalent" }] }, "patient" : { "reference" : "Patient/de-identified-example" }, "occurrenceDateTime" : "2023", "recorded" : "2023", "primarySource" : true}
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{"resourceType":"MedicationRequest","id":"de-identified-example","meta":{"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-medicationrequest"]},"status":"active","intent":"order","medicationCodeableConcept":{"coding":[{"system":"http://www.nlm.nih.gov/research/umls/rxnorm","code":"476872","display":"Nizatidine 15 MG/ML Oral Solution"}]},"subject":{"reference":"Patient/de-identified-example"},"encounter":{"reference":"Encounter/de-identified-example"},"authoredOn":"2008","requester":{"reference":"Practitioner/example"},"dosageInstruction":[{"text":"10 mL bid","timing":{"repeat":{"boundsPeriod":{"start":"2008-04-05"},"frequency":2,"period":1,"periodUnit":"d"}},"doseAndRate":[{"doseQuantity":{"value":10,"unit":"ml","system":"http://unitsofmeasure.org","code":"mL"}}]}]}
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{ "resourceType" : "MedicationRequest", "id" : "de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-medicationrequest"] }, "status" : "active", "intent" : "order", "medicationCodeableConcept" : { "coding" : [{ "system" : "http://www.nlm.nih.gov/research/umls/rxnorm", "code" : "476872", "display" : "Nizatidine 15 MG/ML Oral Solution" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "encounter" : { "reference" : "Encounter/de-identified-example" }, "authoredOn" : "2008", "requester" : { "reference" : "Practitioner/example" }, "dosageInstruction" : [{ "text" : "10 mL bid", "timing" : { "repeat" : { "boundsPeriod" : { "start" : "2008-04-05" }, "frequency" : 2, "period" : 1, "periodUnit" : "d" } }, "doseAndRate" : [{ "doseQuantity" : { "value" : 10, "unit" : "ml", "system" : "http://unitsofmeasure.org", "code" : "mL" } }] }]}
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{"resourceType":"MedicationStatement","id":"de-identified-example","meta":{"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-medicationstatement"]},"status":"active","medicationCodeableConcept":{"coding":[{"system":"http://www.nlm.nih.gov/research/umls/rxnorm","code":"476872","display":"Nizatidine 15 MG/ML Oral Solution"}]},"subject":{"reference":"Patient/de-identified-example"},"effectiveDateTime":"2008","dateAsserted":"2008","dosage":[{"text":"10 mL bid","timing":{"repeat":{"boundsPeriod":{"start":"2008-04-05"},"frequency":2,"period":1,"periodUnit":"d"}},"doseAndRate":[{"doseQuantity":{"value":10,"unit":"ml","system":"http://unitsofmeasure.org","code":"mL"}}]}]}
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{ "resourceType" : "MedicationStatement", "id" : "de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-medicationstatement"] }, "status" : "active", "medicationCodeableConcept" : { "coding" : [{ "system" : "http://www.nlm.nih.gov/research/umls/rxnorm", "code" : "476872", "display" : "Nizatidine 15 MG/ML Oral Solution" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "effectiveDateTime" : "2008", "dateAsserted" : "2008", "dosage" : [{ "text" : "10 mL bid", "timing" : { "repeat" : { "boundsPeriod" : { "start" : "2008-04-05" }, "frequency" : 2, "period" : 1, "periodUnit" : "d" } }, "doseAndRate" : [{ "doseQuantity" : { "value" : 10, "unit" : "ml", "system" : "http://unitsofmeasure.org", "code" : "mL" } }] }]}
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{"resourceType":"Observation","id":"de-identified-
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{"resourceType":"Observation","id":"de-identified-
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{"resourceType":"Observation","id":"de-identified-example","meta":{"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-
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{"resourceType":"Observation","id":"de-identified-
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{"resourceType":"Observation","id":"
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{ "resourceType" : "Observation", "id" : "clinical-result-de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-clinical-result-observation"] }, "extension" : [{ "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-deidentified-instant-extension", "valueDateTime" : "2005" }], "status" : "final", "category" : [{ "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/observation-category", "code" : "imaging", "display" : "Imaging" }] }], "code" : { "coding" : [{ "system" : "http://loinc.org", "code" : "80940-0", "display" : "DXA Femur-L Z-score BMD" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "encounter" : { "reference" : "Encounter/de-identified-example" }, "effectivePeriod" : { "end" : "2005" }, "performer" : [{ "reference" : "Practitioner/example" }], "valueQuantity" : { "value" : 0.05, "unit" : "Z-Score", "system" : "http://unitsofmeasure.org", "code" : "{Z-Score}" }}
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{ "resourceType" : "Observation", "id" : "generic-observation-de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-observation"] }, "extension" : [{ "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-deidentified-instant-extension", "valueDateTime" : "2005" }], "status" : "final", "category" : [{ "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/observation-category", "code" : "social-history", "display" : "Social History" }] }], "code" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "160695008", "display" : "Transport too expensive" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "effectiveDateTime" : "2021", "valueBoolean" : true}
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{ "resourceType" : "Observation", "id" : "de-identified-income-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/de-identified-uds-plus-income-observation"] }, "status" : "final", "code" : { "coding" : [{ "system" : "http://loinc.org", "code" : "63058-2" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "effectiveDateTime" : "2016", "valueRange" : { "low" : { "value" : 101 }, "high" : { "value" : 150 } }}
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{ "resourceType" : "Observation", "id" : "de-identified-income-with-quantity-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/de-identified-uds-plus-income-observation"] }, "status" : "final", "code" : { "coding" : [{ "system" : "http://loinc.org", "code" : "63058-2" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "effectiveDateTime" : "2018", "valueQuantity" : { "value" : 200, "comparator" : ">", "unit" : "percent", "system" : "http://unitsofmeasure.org", "code" : "%" }}
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{ "resourceType" : "Observation", "id" : "de-identified-low-income-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/de-identified-uds-plus-income-observation"] }, "status" : "final", "code" : { "coding" : [{ "system" : "http://loinc.org", "code" : "63058-2" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "effectiveDateTime" : "2016", "valueRange" : { "high" : { "value" : 100 } }}
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{ "resourceType" : "Observation", "id" : "de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-lab-observation"] }, "extension" : [{ "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-deidentified-instant-extension", "valueDateTime" : "2005" }], "status" : "final", "category" : [{ "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/observation-category", "code" : "laboratory", "display" : "Laboratory" }] }], "code" : { "coding" : [{ "system" : "http://loinc.org", "code" : "718-7", "display" : "Hemoglobin [Mass/volume] in Blood" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "encounter" : { "reference" : "Encounter/de-identified-example" }, "effectiveDateTime" : "2005", "performer" : [{ "reference" : "Practitioner/example" }], "valueQuantity" : { "value" : 17, "unit" : "g/dL", "system" : "http://unitsofmeasure.org" }, "bodySite" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "368208006", "display" : "Left upper arm structure" }] }}
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@@ -1,3 +1,3 @@
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1
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-
{"resourceType":"Patient","id":"de-identified-
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2
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{"resourceType":"Patient","id":"de-identified-example","meta":{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/instance-name","valueString":"De-identified Patient Example"},{"url":"http://hl7.org/fhir/StructureDefinition/instance-description","valueMarkdown":"This is a patient example for the *UDS+ Patient Profile*."}],"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/de-identified-uds-plus-patient"]},"extension":[{"extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2106-3","display":"White"}},{"url":"detailed","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2108-9","display":"European"}},{"url":"text","valueString":"White"}],"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-race"},{"extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2135-2","display":"Hispanic or Latino"}},{"url":"detailed","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2184-0","display":"Dominican"}},{"url":"text","valueString":"Hispanic or Latino"}],"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity"},{"url":"http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-birthsex-extension","valueCode":"F"},{"url":"http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-age-extension","valueQuantity":{"value":
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3
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-
{"resourceType":"Patient","id":"de-identified-
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1
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+
{ "resourceType" : "Patient", "id" : "de-identified-age89-example", "meta" : { "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString" : "De-identified Patient Example" }, { "url" : "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown" : "This is a patient example for the *UDS+ Patient Profile*." }], "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/de-identified-uds-plus-patient"] }, "extension" : [{ "extension" : [{ "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2106-3", "display" : "White" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2108-9", "display" : "European" } }, { "url" : "text", "valueString" : "White" }], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension" : [{ "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2135-2", "display" : "Hispanic or Latino" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2184-0", "display" : "Dominican" } }, { "url" : "text", "valueString" : "Hispanic or Latino" }], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-birthsex-extension", "valueCode" : "F" }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity" : { "value" : 90, "comparator" : ">=", "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }], "active" : true, "gender" : "female", "address" : [{ "postalCode" : "00000-1234", "_postalCode" : { "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/data-absent-reason", "valueCode" : "masked" }] } }]}
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{ "resourceType" : "Patient", "id" : "de-identified-smallpop-example", "meta" : { "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString" : "De-identified Patient Example" }, { "url" : "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown" : "This is a patient example for the *UDS+ Patient Profile*." }], "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/de-identified-uds-plus-patient"] }, "extension" : [{ "extension" : [{ "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2106-3", "display" : "White" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2108-9", "display" : "European" } }, { "url" : "text", "valueString" : "White" }], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension" : [{ "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2135-2", "display" : "Hispanic or Latino" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2184-0", "display" : "Dominican" } }, { "url" : "text", "valueString" : "Hispanic or Latino" }], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-birthsex-extension", "valueCode" : "F" }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity" : { "value" : 90, "comparator" : ">=", "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }], "active" : true, "gender" : "female", "address" : [{ "postalCode" : "00000-1234", "_postalCode" : { "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/data-absent-reason", "valueCode" : "masked" }] } }]}
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3
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{ "resourceType" : "Patient", "id" : "de-identified-example", "meta" : { "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString" : "De-identified Patient Example" }, { "url" : "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown" : "This is a patient example for the *UDS+ Patient Profile*." }], "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/de-identified-uds-plus-patient"] }, "extension" : [{ "extension" : [{ "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2106-3", "display" : "White" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2108-9", "display" : "European" } }, { "url" : "text", "valueString" : "White" }], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension" : [{ "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2135-2", "display" : "Hispanic or Latino" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2184-0", "display" : "Dominican" } }, { "url" : "text", "valueString" : "Hispanic or Latino" }], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-birthsex-extension", "valueCode" : "F" }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-sex-extension", "valueCode" : "248152002" }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity" : { "value" : 37, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/udsplus-agriculture-worker-status", "valueCode" : "migratory" }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-housing-status-extension", "valueCode" : "permanent-supportive-housing" }, { "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-veteran-status-extension", "valueBoolean" : false }], "active" : true, "gender" : "female", "address" : [{ "postalCode" : "03600" }]}
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@@ -1 +1 @@
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1
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-
{"resourceType":"Procedure","id":"de-identified-example","meta":{"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-procedure"]},"extension":[{"url":"http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-recordedDate-extension","valueDateTime":"2005"}],"status":"completed","code":{"coding":[{"system":"http://snomed.info/sct","code":"48387007","display":"Tracheotomy"}]},"subject":{"reference":"Patient/de-identified-example"},"encounter":{"reference":"Encounter/de-identified-example"},"performedDateTime":"2005","performer":[{"actor":{"reference":"Practitioner/example"}}],"bodySite":[{"coding":[{"system":"http://snomed.info/sct","code":"44567001","display":"Tracheal structure"}]}]}
|
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1
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+
{ "resourceType" : "Procedure", "id" : "de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-procedure"] }, "extension" : [{ "url" : "http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-recordedDate-extension", "valueDateTime" : "2005" }], "status" : "completed", "code" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "48387007", "display" : "Tracheotomy" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "encounter" : { "reference" : "Encounter/de-identified-example" }, "performedDateTime" : "2005", "performer" : [{ "actor" : { "reference" : "Practitioner/example" } }], "bodySite" : [{ "coding" : [{ "system" : "http://snomed.info/sct", "code" : "44567001", "display" : "Tracheal structure" }] }]}
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@@ -1 +1 @@
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1
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-
{"resourceType":"RelatedPerson","id":"de-identified-example","meta":{"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/de-identified-uds-plus-relatedperson"]},"patient":{"reference":"Patient/de-identified-example"},"relationship":[{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v3-RoleCode","code":"FAMMEMB","display":"family member"}]}]}
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1
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+
{ "resourceType" : "RelatedPerson", "id" : "de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/de-identified-uds-plus-relatedperson"] }, "patient" : { "reference" : "Patient/de-identified-example" }, "relationship" : [{ "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "FAMMEMB", "display" : "family member" }] }]}
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@@ -1 +1 @@
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1
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-
{"resourceType":"Parameters","id":"reporting-parameters-example","meta":{"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-patient-reporting-parameters"]},"parameter":[{"name":"patientReference","valueReference":{"reference":"Patient/de-identified-example"}},{"name":"combinedFundingStreams","valueString":"CHC,MHC"},{"name":"reportNames","part":[{"name":"patientsByZip","valueBoolean":true},{"name":"table3A","valueBoolean":true},{"name":"table3B","valueBoolean":true},{"name":"table4","valueBoolean":true},{"name":"table6A","valueBoolean":true},{"name":"table6B-Line1-6-Age-Of-Prenatal-Care-Patients","valueBoolean":false},{"name":"table6B-Line7-9-Early-Entry-Into-Prenatal-Care","valueBoolean":true},{"name":"table6B-Line10-Childhood-Immunization-Status-CMS117","valueBoolean":true},{"name":"table6B-Line11-Cervical-Cancer-Screening-CMS124","valueBoolean":true},{"name":"table6B-Line11a-Breast-Cancer-Screening-CMS125","valueBoolean":true},{"name":"table6B-Line12-Weight-Assessment-And-Counselling-CMS155","valueBoolean":true},{"name":"table6B-Line13-Preventive-Care-And-Screening-BMI-CMS69","valueBoolean":true},{"name":"table6B-Line14a-Preventive-Care-And-Screening-Tobacco-Use-CMS138","valueBoolean":true},{"name":"table6B-Line17a-Statin-Therapy-CMS347","valueBoolean":true},{"name":"table6B-Line18-Ischmic-Vascular-Disease-CMS164","valueBoolean":true},{"name":"table6B-Line19-Colorectal-Cancer-Screening-CMS130","valueBoolean":true},{"name":"table6B-Line20-HIV-Linkage-To-Care","valueBoolean":true},{"name":"table6B-Line20a-HIV-Screening-CMS349","valueBoolean":true},{"name":"table6B-Line21-Preventive-Care-And-Screening-For-Depression-CMS2","valueBoolean":true},{"name":"table6B-Line21a-Depression-Remission-At-Twelve-Months-CMS159","valueBoolean":true},{"name":"table6B-Line22-Dental-Sealants-For-Children-CMS277","valueBoolean":true},{"name":"table7-Line0-HIV-Positive-Pregnant-Patients","valueBoolean":true},{"name":"table7-Line2-Deliveries-Performed-By-Health-Center","valueBoolean":true},{"name":"table7-Line1a-d-Prenatal-Care-Patient-Deliveries","valueBoolean":true},{"name":"table7-Line2a-c-Controlling-High-Blood-Pressure-CMS165","valueBoolean":true},{"name":"table7-Line3a-f-HbA1c-Poor-Control-CMS122","valueBoolean":true}]}]}
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1
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+
{ "resourceType" : "Parameters", "id" : "reporting-parameters-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-patient-reporting-parameters"] }, "parameter" : [{ "name" : "patientReference", "valueReference" : { "reference" : "Patient/de-identified-example" } }, { "name" : "combinedFundingStreams", "valueString" : "CHC,MHC" }, { "name" : "reportNames", "part" : [{ "name" : "patientsByZip", "valueBoolean" : true }, { "name" : "table3A", "valueBoolean" : true }, { "name" : "table3B", "valueBoolean" : true }, { "name" : "table4", "valueBoolean" : true }, { "name" : "table6A", "valueBoolean" : true }, { "name" : "table6B-Line1-6-Age-Of-Prenatal-Care-Patients", "valueBoolean" : false }, { "name" : "table6B-Line7-9-Early-Entry-Into-Prenatal-Care", "valueBoolean" : true }, { "name" : "table6B-Line10-Childhood-Immunization-Status-CMS117", "valueBoolean" : true }, { "name" : "table6B-Line11-Cervical-Cancer-Screening-CMS124", "valueBoolean" : true }, { "name" : "table6B-Line11a-Breast-Cancer-Screening-CMS125", "valueBoolean" : true }, { "name" : "table6B-Line12-Weight-Assessment-And-Counselling-CMS155", "valueBoolean" : true }, { "name" : "table6B-Line13-Preventive-Care-And-Screening-BMI-CMS69", "valueBoolean" : true }, { "name" : "table6B-Line14a-Preventive-Care-And-Screening-Tobacco-Use-CMS138", "valueBoolean" : true }, { "name" : "table6B-Line17a-Statin-Therapy-CMS347", "valueBoolean" : true }, { "name" : "table6B-Line18-Ischmic-Vascular-Disease-CMS164", "valueBoolean" : true }, { "name" : "table6B-Line19-Colorectal-Cancer-Screening-CMS130", "valueBoolean" : true }, { "name" : "table6B-Line20-HIV-Linkage-To-Care", "valueBoolean" : true }, { "name" : "table6B-Line20a-HIV-Screening-CMS349", "valueBoolean" : true }, { "name" : "table6B-Line21-Preventive-Care-And-Screening-For-Depression-CMS2", "valueBoolean" : true }, { "name" : "table6B-Line21a-Depression-Remission-At-Twelve-Months-CMS159", "valueBoolean" : true }, { "name" : "table6B-Line22-Dental-Sealants-For-Children-CMS277", "valueBoolean" : true }, { "name" : "table7-Line0-HIV-Positive-Pregnant-Patients", "valueBoolean" : true }, { "name" : "table7-Line2-Deliveries-Performed-By-Health-Center", "valueBoolean" : true }, { "name" : "table7-Line1a-d-Prenatal-Care-Patient-Deliveries", "valueBoolean" : true }, { "name" : "table7-Line2a-c-Controlling-High-Blood-Pressure-CMS165", "valueBoolean" : true }, { "name" : "table7-Line3a-f-HbA1c-Poor-Control-CMS122", "valueBoolean" : true }] }]}
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@@ -1 +1 @@
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1
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-
{"resourceType":"ServiceRequest","id":"de-identified-example","meta":{"profile":["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-servicerequest"]},"status":"completed","intent":"order","doNotPerform":false,"code":{"coding":[{"system":"http://snomed.info/sct","code":"76164006","display":"Biopsy of colon (procedure)"}]},"subject":{"reference":"Patient/de-identified-example"},"encounter":{"reference":"Encounter/de-identified-example"},"authoredOn":"2017","requester":{"reference":"Practitioner/example"},"bodySite":[{"coding":[{"system":"http://snomed.info/sct","code":"485005","display":"Transverse colon structure"}]}]}
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1
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+
{ "resourceType" : "ServiceRequest", "id" : "de-identified-example", "meta" : { "profile" : ["http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-servicerequest"] }, "status" : "completed", "intent" : "order", "doNotPerform" : false, "code" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "76164006", "display" : "Biopsy of colon (procedure)" }] }, "subject" : { "reference" : "Patient/de-identified-example" }, "encounter" : { "reference" : "Encounter/de-identified-example" }, "authoredOn" : "2017", "requester" : { "reference" : "Practitioner/example" }, "bodySite" : [{ "coding" : [{ "system" : "http://snomed.info/sct", "code" : "485005", "display" : "Transverse colon structure" }] }]}
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@@ -5,20 +5,16 @@ require_relative './read_encounter_test'
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5
5
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require_relative './read_income_test'
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6
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require_relative './read_patient_test'
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7
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require_relative './read_procedure_test'
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-
require_relative './read_sexual_orientation_test'
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require_relative '../validate_coverage_test'
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require_relative '../validate_diagnosis_test'
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require_relative '../validate_encounter_test'
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require_relative '../validate_income_test'
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require_relative '../validate_patient_test'
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require_relative '../validate_procedure_test'
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-
require_relative '../validate_sexual_orientation_test'
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require_relative './read_manifest_ind_test'
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15
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require_relative '../manifest_tests/validate_manifest_test'
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require_relative './read_observation_test'
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require_relative '../validate_observation_test'
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-
require_relative './read_special_observation_test'
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21
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-
require_relative '../validate_special_observation_test'
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require_relative './read_related_person_test'
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19
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require_relative '../validate_related_person_test'
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24
20
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require_relative './read_immunization_test'
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@@ -83,16 +79,12 @@ module UDSPlusTestKit
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83
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test from: :uds_plus_validate_adverse_event_test
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84
80
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test from: :uds_plus_read_income_test
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85
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test from: :uds_plus_validate_income_test
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-
test from: :uds_plus_read_sexual_orientation_test
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-
test from: :uds_plus_validate_sexual_orientation_test
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88
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test from: :uds_plus_read_lab_test
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89
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test from: :uds_plus_validate_lab_test
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90
84
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test from: :uds_plus_read_clinical_result_test
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91
85
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test from: :uds_plus_validate_clinical_result_test
|
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92
86
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test from: :uds_plus_read_observation_test
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93
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test from: :uds_plus_validate_observation_test
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-
test from: :uds_plus_read_special_observation_test
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-
test from: :uds_plus_validate_special_observation_test
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96
88
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test from: :uds_plus_read_medication_request_test
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97
89
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test from: :uds_plus_validate_medication_request_test
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98
90
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test from: :uds_plus_read_medication_statement_test
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@@ -14,6 +14,10 @@ module UDSPlusTestKit
|
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14
14
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scratch[:data_resources] ||= {}
|
|
15
15
|
end
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16
16
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|
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17
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+
def observation_data
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18
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+
data_scratch['Observation'] ||= []
|
|
19
|
+
end
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20
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+
|
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17
21
|
def valid_data_types
|
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18
22
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[
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19
23
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'Coverage', 'Condition', 'Encounter',
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@@ -27,6 +31,13 @@ module UDSPlusTestKit
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27
31
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end
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28
32
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29
33
|
run do
|
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34
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+
identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the
|
|
35
|
+
resource's Structure Definition. Resource.meta.profile either does
|
|
36
|
+
not exist in this resource, or its contents do not point to a valid
|
|
37
|
+
location for type Parameters. **NOTE:**
|
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38
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+
If this error occurs, it can trigger a fail for all parameters-type tests,
|
|
39
|
+
regardless of whether both tests were meant to run.)
|
|
40
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+
|
|
30
41
|
invalid_types_found = []
|
|
31
42
|
data_scratch.keys.each do |data_type|
|
|
32
43
|
if !valid_data_types.include?(data_type)
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@@ -39,6 +50,44 @@ module UDSPlusTestKit
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39
50
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in the import manifest: #{invalid_types_found}.
|
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40
51
|
)
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41
52
|
assert invalid_types_found.empty?, fail_message
|
|
53
|
+
|
|
54
|
+
# For 2.0.0 release of IG, all types of Observation resources have been strongly defined. Move validation step of whether all Observation
|
|
55
|
+
# resources submitted match one of the known types from the Special Observation test to here
|
|
56
|
+
invalid_observations_found = []
|
|
57
|
+
observation_data.each do |resource|
|
|
58
|
+
# All these assertions are to differentiate Observation data between orientation types.
|
|
59
|
+
# A resource is skipped if it is one of the observation types with their own tests.
|
|
60
|
+
type_identifier = resource.to_hash
|
|
61
|
+
assert type_identifier['meta'].present?, identifier_fail_message
|
|
62
|
+
|
|
63
|
+
type_identifier = type_identifier['meta']
|
|
64
|
+
assert type_identifier.is_a?(Hash), identifier_fail_message
|
|
65
|
+
assert type_identifier['profile'].present?, identifier_fail_message
|
|
66
|
+
|
|
67
|
+
type_identifier = type_identifier['profile']
|
|
68
|
+
assert type_identifier.is_a?(Array), identifier_fail_message
|
|
69
|
+
assert !type_identifier.empty?, identifier_fail_message
|
|
70
|
+
|
|
71
|
+
|
|
72
|
+
type_identifier = type_identifier.first
|
|
73
|
+
assert type_identifier.is_a?(String), identifier_fail_message
|
|
74
|
+
|
|
75
|
+
known_observations = ["income", "-lab-", "clinical-result", "uds-plus-observation"]
|
|
76
|
+
is_known_observation = false
|
|
77
|
+
known_observations.each do |cur|
|
|
78
|
+
is_known_observation = (is_known_observation || type_identifier.include?(cur))
|
|
79
|
+
end
|
|
80
|
+
|
|
81
|
+
if !is_known_observation
|
|
82
|
+
invalid_observations_found << type_identifier
|
|
83
|
+
end
|
|
84
|
+
end
|
|
85
|
+
|
|
86
|
+
observation_fail_message = %(
|
|
87
|
+
The following invalid observation types were referenced
|
|
88
|
+
in the import manifest: #{invalid_observations_found}.
|
|
89
|
+
)
|
|
90
|
+
assert invalid_observations_found.empty?, observation_fail_message
|
|
42
91
|
end
|
|
43
92
|
end
|
|
44
93
|
end
|
|
@@ -9,9 +9,7 @@ require_relative '../validate_income_test'
|
|
|
9
9
|
require_relative './validate_manifest_test'
|
|
10
10
|
require_relative '../validate_patient_test'
|
|
11
11
|
require_relative '../validate_procedure_test'
|
|
12
|
-
require_relative '../validate_sexual_orientation_test'
|
|
13
12
|
require_relative '../validate_observation_test'
|
|
14
|
-
require_relative '../validate_special_observation_test'
|
|
15
13
|
require_relative '../validate_related_person_test'
|
|
16
14
|
require_relative '../validate_immunization_test'
|
|
17
15
|
require_relative '../validate_lab_test'
|
|
@@ -52,11 +50,9 @@ module UDSPlusTestKit
|
|
|
52
50
|
test from: :uds_plus_validate_allergy_intolerance_test
|
|
53
51
|
test from: :uds_plus_validate_adverse_event_test
|
|
54
52
|
test from: :uds_plus_validate_income_test
|
|
55
|
-
test from: :uds_plus_validate_sexual_orientation_test
|
|
56
53
|
test from: :uds_plus_validate_lab_test
|
|
57
54
|
test from: :uds_plus_validate_clinical_result_test
|
|
58
55
|
test from: :uds_plus_validate_observation_test
|
|
59
|
-
test from: :uds_plus_validate_special_observation_test
|
|
60
56
|
test from: :uds_plus_validate_medication_request_test
|
|
61
57
|
test from: :uds_plus_validate_medication_statement_test
|
|
62
58
|
test from: :uds_plus_validate_service_request_test
|
|
@@ -5,7 +5,7 @@ module UDSPlusTestKit
|
|
|
5
5
|
id :uds_plus
|
|
6
6
|
title 'UDS+ Test Kit'
|
|
7
7
|
description <<~DESCRIPTION
|
|
8
|
-
The UDS+ Test Kit validates the conformance of a server to the [UDS+ IG
|
|
8
|
+
The UDS+ Test Kit validates the conformance of a server to the [UDS+ IG v2.0.0](https://fhir.org/guides/hrsa/uds-plus/STU2). The included tests function as a rudimentary data receiver. This receiver will take a provided Import Manifest, either as an HTTP location or as a raw json, and validate its contents. This includes validating the structure of the manifest, as well as the structure of the data the manifest points to.
|
|
9
9
|
<!-- break -->
|
|
10
10
|
This test kit is built using the [Inferno Framework](https://inferno-framework.github.io/docs/). The Inferno Framework is designed for reuse and aims to make it easier to build test kits for any FHIR-based data exchange.
|
|
11
11
|
|
|
@@ -14,9 +14,7 @@ require_relative '../validate_encounter_test'
|
|
|
14
14
|
require_relative '../validate_income_test'
|
|
15
15
|
require_relative '../validate_patient_test'
|
|
16
16
|
require_relative '../validate_procedure_test'
|
|
17
|
-
require_relative '../validate_sexual_orientation_test'
|
|
18
17
|
require_relative '../validate_observation_test'
|
|
19
|
-
require_relative '../validate_special_observation_test'
|
|
20
18
|
require_relative '../validate_related_person_test'
|
|
21
19
|
require_relative '../validate_immunization_test'
|
|
22
20
|
require_relative '../validate_lab_test'
|
|
@@ -58,11 +56,9 @@ module UDSPlusTestKit
|
|
|
58
56
|
test from: :uds_plus_validate_allergy_intolerance_test
|
|
59
57
|
test from: :uds_plus_validate_adverse_event_test
|
|
60
58
|
test from: :uds_plus_validate_income_test
|
|
61
|
-
test from: :uds_plus_validate_sexual_orientation_test
|
|
62
59
|
test from: :uds_plus_validate_lab_test
|
|
63
60
|
test from: :uds_plus_validate_clinical_result_test
|
|
64
61
|
test from: :uds_plus_validate_observation_test
|
|
65
|
-
test from: :uds_plus_validate_special_observation_test
|
|
66
62
|
test from: :uds_plus_validate_medication_request_test
|
|
67
63
|
test from: :uds_plus_validate_medication_statement_test
|
|
68
64
|
test from: :uds_plus_validate_service_request_test
|
|
@@ -8,7 +8,7 @@ module UDSPlusTestKit
|
|
|
8
8
|
title 'UDS+ Test Kit'
|
|
9
9
|
description %(
|
|
10
10
|
The UDS+ Test Kit tests systems for their conformance to the [UDS+
|
|
11
|
-
Implementation Guide
|
|
11
|
+
Implementation Guide v2.0.0](https://fhir.org/guides/hrsa/uds-plus/STU2).
|
|
12
12
|
The included tests function as a rudimentary data receiver. This receiver will
|
|
13
13
|
take a provided Import Manifest, either as an HTTP location or as a raw json,
|
|
14
14
|
and validate its contents. This includes validating the structure of the manifest,
|
|
@@ -17,7 +17,7 @@ module UDSPlusTestKit
|
|
|
17
17
|
|
|
18
18
|
fhir_resource_validator do
|
|
19
19
|
# The home-lab-report contains validation tools for certain codes missing in the UDS+ package
|
|
20
|
-
igs('fhir.hrsa.uds-plus#
|
|
20
|
+
igs('fhir.hrsa.uds-plus#2.0.0', 'hl7.fhir.us.home-lab-report#1.0.0')
|
|
21
21
|
|
|
22
22
|
cli_context do
|
|
23
23
|
displayWarnings true
|
|
@@ -140,8 +140,8 @@ module UDSPlusTestKit
|
|
|
140
140
|
},
|
|
141
141
|
{
|
|
142
142
|
type: 'ig',
|
|
143
|
-
label: 'UDS+ Implementation Guide
|
|
144
|
-
url: 'https://fhir.org/guides/hrsa/uds-plus/
|
|
143
|
+
label: 'UDS+ Implementation Guide v2.0.0',
|
|
144
|
+
url: 'https://fhir.org/guides/hrsa/uds-plus/STU2'
|
|
145
145
|
}
|
|
146
146
|
]
|
|
147
147
|
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: uds_plus_test_kit
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.2.
|
|
4
|
+
version: 1.2.1
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Leap Orbit
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2025-
|
|
11
|
+
date: 2025-04-30 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: inferno_core
|
|
@@ -129,8 +129,6 @@ files:
|
|
|
129
129
|
- lib/uds_plus_test_kit/input_resource_tests/read_procedure_test.rb
|
|
130
130
|
- lib/uds_plus_test_kit/input_resource_tests/read_related_person_test.rb
|
|
131
131
|
- lib/uds_plus_test_kit/input_resource_tests/read_service_request_test.rb
|
|
132
|
-
- lib/uds_plus_test_kit/input_resource_tests/read_sexual_orientation_test.rb
|
|
133
|
-
- lib/uds_plus_test_kit/input_resource_tests/read_special_observation_test.rb
|
|
134
132
|
- lib/uds_plus_test_kit/input_resource_tests/resource_group.rb
|
|
135
133
|
- lib/uds_plus_test_kit/manifest_tests/invalid_type_test.rb
|
|
136
134
|
- lib/uds_plus_test_kit/manifest_tests/read_data_test.rb
|
|
@@ -161,8 +159,6 @@ files:
|
|
|
161
159
|
- lib/uds_plus_test_kit/validate_procedure_test.rb
|
|
162
160
|
- lib/uds_plus_test_kit/validate_related_person_test.rb
|
|
163
161
|
- lib/uds_plus_test_kit/validate_service_request_test.rb
|
|
164
|
-
- lib/uds_plus_test_kit/validate_sexual_orientation_test.rb
|
|
165
|
-
- lib/uds_plus_test_kit/validate_special_observation_test.rb
|
|
166
162
|
- lib/uds_plus_test_kit/version.rb
|
|
167
163
|
homepage: https://github.com/inferno-framework/uds-plus-test-kit
|
|
168
164
|
licenses:
|
|
@@ -1,54 +0,0 @@
|
|
|
1
|
-
require 'json'
|
|
2
|
-
|
|
3
|
-
module UDSPlusTestKit
|
|
4
|
-
class ReadSexualOrientationTest < Inferno::Test
|
|
5
|
-
id :uds_plus_read_sexual_orientation_test
|
|
6
|
-
title 'Receive UDS+ Sexual Orientation Data'
|
|
7
|
-
description %(
|
|
8
|
-
Test takes from the user either: the http location of sexual orientation data
|
|
9
|
-
or the raw JSON of the data itself.
|
|
10
|
-
It attempts to GET the data stored at the given location if a link is provided,
|
|
11
|
-
then validates whether a FHIR resource can be generated from the input data.
|
|
12
|
-
)
|
|
13
|
-
|
|
14
|
-
input :sexual_orientation_data,
|
|
15
|
-
title: 'Sexual Orientation Data',
|
|
16
|
-
optional: true,
|
|
17
|
-
description: %q(
|
|
18
|
-
User can input the data as:
|
|
19
|
-
a URL link to the location of the data (ex: http://www.example.com/sexual_orientation_data.json)
|
|
20
|
-
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
|
21
|
-
)
|
|
22
|
-
|
|
23
|
-
def data_scratch
|
|
24
|
-
scratch[:data_resources] ||= {}
|
|
25
|
-
end
|
|
26
|
-
|
|
27
|
-
def data_to_test
|
|
28
|
-
data_scratch['Observation'] ||= []
|
|
29
|
-
end
|
|
30
|
-
|
|
31
|
-
run do
|
|
32
|
-
omit_if !sexual_orientation_data.present?, "No data provided; skipping test."
|
|
33
|
-
|
|
34
|
-
# if the input is a url, else it is a json
|
|
35
|
-
if sexual_orientation_data.strip[0] != '{'
|
|
36
|
-
assert_valid_http_uri(sexual_orientation_data, "Location provided is not a valid http uri.")
|
|
37
|
-
get sexual_orientation_data
|
|
38
|
-
assert_response_status(200)
|
|
39
|
-
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
|
40
|
-
data = request.response_body
|
|
41
|
-
else
|
|
42
|
-
assert_valid_json(sexual_orientation_data, "JSON inputted was not in a valid format")
|
|
43
|
-
data = sexual_orientation_data
|
|
44
|
-
end
|
|
45
|
-
|
|
46
|
-
resource = FHIR::Json.from_json(data)
|
|
47
|
-
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
|
48
|
-
|
|
49
|
-
if resource.is_a?(FHIR::Model)
|
|
50
|
-
data_to_test << resource
|
|
51
|
-
end
|
|
52
|
-
end
|
|
53
|
-
end
|
|
54
|
-
end
|
|
@@ -1,54 +0,0 @@
|
|
|
1
|
-
require 'json'
|
|
2
|
-
|
|
3
|
-
module UDSPlusTestKit
|
|
4
|
-
class ReadSpecialObservationTest < Inferno::Test
|
|
5
|
-
id :uds_plus_read_special_observation_test
|
|
6
|
-
title 'Receive UDS+ Special Observation Data'
|
|
7
|
-
description %(
|
|
8
|
-
Test takes from the user either: the http location of special observation data
|
|
9
|
-
(such as uds-special-population-observation) or the raw JSON of the data itself.
|
|
10
|
-
It attempts to GET the data stored at the given location if a link is provided,
|
|
11
|
-
then validates whether a FHIR resource can be generated from the input data.
|
|
12
|
-
)
|
|
13
|
-
|
|
14
|
-
input :special_observation_data,
|
|
15
|
-
title: 'Special Observation Data',
|
|
16
|
-
optional: true,
|
|
17
|
-
description: %q(
|
|
18
|
-
User can input the data as:
|
|
19
|
-
a URL link to the location of the data (ex: http://www.example.com/special_observation_data.json)
|
|
20
|
-
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
|
21
|
-
)
|
|
22
|
-
|
|
23
|
-
def data_scratch
|
|
24
|
-
scratch[:data_resources] ||= {}
|
|
25
|
-
end
|
|
26
|
-
|
|
27
|
-
def data_to_test
|
|
28
|
-
data_scratch['Observation'] ||= []
|
|
29
|
-
end
|
|
30
|
-
|
|
31
|
-
run do
|
|
32
|
-
omit_if !special_observation_data.present?, "No data provided; skipping test."
|
|
33
|
-
|
|
34
|
-
# if the input is a url, else it is a json
|
|
35
|
-
if special_observation_data.strip[0] != '{'
|
|
36
|
-
assert_valid_http_uri(special_observation_data, "Location provided is not a valid http uri.")
|
|
37
|
-
get special_observation_data
|
|
38
|
-
assert_response_status(200)
|
|
39
|
-
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
|
40
|
-
data = request.response_body
|
|
41
|
-
else
|
|
42
|
-
assert_valid_json(special_observation_data, "JSON inputted was not in a valid format")
|
|
43
|
-
data = special_observation_data
|
|
44
|
-
end
|
|
45
|
-
|
|
46
|
-
resource = FHIR::Json.from_json(data)
|
|
47
|
-
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
|
48
|
-
|
|
49
|
-
if resource.is_a?(FHIR::Model)
|
|
50
|
-
data_to_test << resource
|
|
51
|
-
end
|
|
52
|
-
end
|
|
53
|
-
end
|
|
54
|
-
end
|
|
@@ -1,65 +0,0 @@
|
|
|
1
|
-
require 'json'
|
|
2
|
-
require_relative './version'
|
|
3
|
-
|
|
4
|
-
module UDSPlusTestKit
|
|
5
|
-
class ValidateSexualOrientationTest < Inferno::Test
|
|
6
|
-
id :uds_plus_validate_sexual_orientation_test
|
|
7
|
-
title 'Validate UDS+ Sexual Orientation Data'
|
|
8
|
-
description %(
|
|
9
|
-
Test takes the Sexual Orientation resources identified
|
|
10
|
-
by the import manifest, and validates whether they conform
|
|
11
|
-
to their UDS+ Structure Definitions.
|
|
12
|
-
)
|
|
13
|
-
|
|
14
|
-
def data_scratch
|
|
15
|
-
scratch[:data_resources] ||= {}
|
|
16
|
-
end
|
|
17
|
-
|
|
18
|
-
def data_to_test
|
|
19
|
-
data_scratch['Observation'] ||= []
|
|
20
|
-
end
|
|
21
|
-
|
|
22
|
-
run do
|
|
23
|
-
omit_if data_to_test.empty?, "No data of this type was identified."
|
|
24
|
-
|
|
25
|
-
profile_definition = 'http://fhir.org/guides/hrsa/uds-plus/StructureDefinition/uds-plus-sexual-orientation-observation'
|
|
26
|
-
profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
|
|
27
|
-
|
|
28
|
-
no_resource_of_this_type = true
|
|
29
|
-
identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the
|
|
30
|
-
resource's Structure Definition. Resource.meta.profile either does
|
|
31
|
-
not exist in this resource, or its contents do not point to a valid
|
|
32
|
-
location for type Observation. **NOTE:**
|
|
33
|
-
If this error occurs, it can trigger a fail for all observation-type tests,
|
|
34
|
-
regardless of whether all such tests were meant to run.)
|
|
35
|
-
|
|
36
|
-
data_to_test.each do |resource|
|
|
37
|
-
# All these assertions are to differentiate Observation data between orientation types.
|
|
38
|
-
# A resource is skipped if it cannot be identified as a sexual orientation resource.
|
|
39
|
-
type_identifier = resource.to_hash
|
|
40
|
-
assert type_identifier['meta'].present?, identifier_fail_message
|
|
41
|
-
|
|
42
|
-
type_identifier = type_identifier['meta']
|
|
43
|
-
assert type_identifier.is_a?(Hash), identifier_fail_message
|
|
44
|
-
assert type_identifier['profile'].present?, identifier_fail_message
|
|
45
|
-
|
|
46
|
-
type_identifier = type_identifier['profile']
|
|
47
|
-
assert type_identifier.is_a?(Array), identifier_fail_message
|
|
48
|
-
assert !type_identifier.empty?, identifier_fail_message
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
type_identifier = type_identifier.first
|
|
52
|
-
assert type_identifier.is_a?(String), identifier_fail_message
|
|
53
|
-
if !type_identifier.include?("sexual-orientation")
|
|
54
|
-
next
|
|
55
|
-
end
|
|
56
|
-
|
|
57
|
-
no_resource_of_this_type = false
|
|
58
|
-
|
|
59
|
-
assert_valid_resource(resource: resource, profile_url: profile_with_version)
|
|
60
|
-
end
|
|
61
|
-
|
|
62
|
-
omit_if no_resource_of_this_type, "No data of this type was identified."
|
|
63
|
-
end
|
|
64
|
-
end
|
|
65
|
-
end
|
|
@@ -1,72 +0,0 @@
|
|
|
1
|
-
require 'json'
|
|
2
|
-
require_relative './version'
|
|
3
|
-
|
|
4
|
-
module UDSPlusTestKit
|
|
5
|
-
class ValidateSpecialObservationTest < Inferno::Test
|
|
6
|
-
id :uds_plus_validate_special_observation_test
|
|
7
|
-
title 'Validate UDS+ Special Observation Data'
|
|
8
|
-
description %(
|
|
9
|
-
Test takes the Special Observation resources identified
|
|
10
|
-
(such as uds-special-population-observation) by the import
|
|
11
|
-
manifest, and validates whether they conform to their
|
|
12
|
-
UDS+ Structure Definitions.
|
|
13
|
-
)
|
|
14
|
-
|
|
15
|
-
def data_scratch
|
|
16
|
-
scratch[:data_resources] ||= {}
|
|
17
|
-
end
|
|
18
|
-
|
|
19
|
-
def data_to_test
|
|
20
|
-
data_scratch['Observation'] ||= []
|
|
21
|
-
end
|
|
22
|
-
|
|
23
|
-
run do
|
|
24
|
-
omit_if data_to_test.empty?, "No data of this type was identified."
|
|
25
|
-
|
|
26
|
-
no_resource_of_this_type = true
|
|
27
|
-
identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the
|
|
28
|
-
resource's Structure Definition. Resource.meta.profile either does
|
|
29
|
-
not exist in this resource, or its contents do not point to a valid
|
|
30
|
-
location for type Observation. **NOTE:**
|
|
31
|
-
If this error occurs, it can trigger a fail for all observation-type tests,
|
|
32
|
-
regardless of whether all such tests were meant to run.)
|
|
33
|
-
|
|
34
|
-
data_to_test.each do |resource|
|
|
35
|
-
# All these assertions are to differentiate Observation data between orientation types.
|
|
36
|
-
# A resource is skipped if it is one of the observation types with their own tests.
|
|
37
|
-
type_identifier = resource.to_hash
|
|
38
|
-
assert type_identifier['meta'].present?, identifier_fail_message
|
|
39
|
-
|
|
40
|
-
type_identifier = type_identifier['meta']
|
|
41
|
-
assert type_identifier.is_a?(Hash), identifier_fail_message
|
|
42
|
-
assert type_identifier['profile'].present?, identifier_fail_message
|
|
43
|
-
|
|
44
|
-
type_identifier = type_identifier['profile']
|
|
45
|
-
assert type_identifier.is_a?(Array), identifier_fail_message
|
|
46
|
-
assert !type_identifier.empty?, identifier_fail_message
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
type_identifier = type_identifier.first
|
|
50
|
-
assert type_identifier.is_a?(String), identifier_fail_message
|
|
51
|
-
|
|
52
|
-
known_observations = ["income", "sexual-orientation", "-lab-", "clinical-result", "uds-plus-observation"]
|
|
53
|
-
is_known_observation = false
|
|
54
|
-
known_observations.each do |cur|
|
|
55
|
-
is_known_observation = (is_known_observation || type_identifier.include?(cur))
|
|
56
|
-
end
|
|
57
|
-
|
|
58
|
-
if is_known_observation
|
|
59
|
-
next
|
|
60
|
-
else
|
|
61
|
-
assert type_identifier.downcase.include?("observation"), identifier_fail_message
|
|
62
|
-
end
|
|
63
|
-
|
|
64
|
-
no_resource_of_this_type = false
|
|
65
|
-
|
|
66
|
-
assert_valid_resource(resource: resource)
|
|
67
|
-
end
|
|
68
|
-
|
|
69
|
-
omit_if no_resource_of_this_type, "No data of this type was identified."
|
|
70
|
-
end
|
|
71
|
-
end
|
|
72
|
-
end
|