triannon 0.0.3

checksums.yaml

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+  data.tar.gz: eb58660e72be33aa86bc66f0feb676d9cf2ed4ea
+SHA512:
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data/README.md

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+[![Build Status](https://travis-ci.org/sul-dlss/triannon.svg?branch=master)](https://travis-ci.org/sul-dlss/triannon) [![Dependency Status](https://gemnasium.com/sul-dlss/triannon.svg)](https://gemnasium.com/sul-dlss/triannon) [![Gem Version](https://badge.fury.io/rb/triannon.svg)](http://badge.fury.io/rb/triannon)
+
+# Triannon
+
+Demonstration Open Annotation to support the Linked Data for Libraries use cases.
+
+## Tests
+
+Run tests:
+
+```console
+$ rake
+```
+
+## Installation
+
+Add this line to your gemfile
+
+```ruby
+gem 'triannon'
+```
+
+Then execute:
+
+```console
+$ bundle
+```
+
+Then run the triannon generator:
+
+```console
+$ rails g triannon:install
+```
+
+## Running the application in development
+
+There is a bundled rake task for running the test app:
+
+```console
+$ rake engine_cart:generate # (first run only)
+$ rake triannon:server
+```

data/Rakefile

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+begin
+  require 'bundler/setup'
+rescue LoadError
+  puts 'You must `gem install bundler` and `bundle install` to run rake tasks'
+end
+
+ZIP_URL = "https://github.com/projecthydra/hydra-jetty/archive/v8.0.0.rc2.zip"
+
+require 'active_support/benchmarkable'
+require 'jettywrapper'
+
+require 'rdoc/task'
+
+RDoc::Task.new(:rdoc) do |rdoc|
+  rdoc.rdoc_dir = 'rdoc'
+  rdoc.title    = 'Triannon'
+  rdoc.options << '--line-numbers'
+  rdoc.rdoc_files.include('README.rdoc')
+  rdoc.rdoc_files.include('lib/**/*.rb')
+end
+
+require 'engine_cart/rake_task'
+desc 'run the triannon specs'
+task :ci => ['engine_cart:generate', 'jetty:clean'] do
+  # run the tests
+  RAILS_ENV = 'test'
+  jetty_params = Jettywrapper.load_config.merge({:jetty_home => File.expand_path(File.dirname(__FILE__) + '/jetty')})
+  Jettywrapper.wrap(jetty_params) do
+    Rake::Task['spec'].invoke
+  end
+end
+
+namespace :triannon do
+  desc 'run the test rails app w triannon'
+  task :server do
+    jetty_params = Jettywrapper.load_config.merge({:jetty_home => File.expand_path(File.dirname(__FILE__) + '/jetty')})
+    Jettywrapper.wrap(jetty_params) do
+      within_test_app do
+        system "rails s"
+      end
+    end
+  end
+
+  desc 'run the test rails console w triannon'
+  task :console do
+    jetty_params = Jettywrapper.load_config.merge({:jetty_home => File.expand_path(File.dirname(__FILE__) + '/jetty')})
+    Jettywrapper.wrap(jetty_params) do
+      within_test_app do
+        system "rails c"
+      end
+    end
+  end
+
+  desc 'run the test rails console w triannon but no jetty'
+  task :console_no_jetty do
+    within_test_app do
+      system "rails c"
+    end
+  end
+end
+
+
+load 'rails/tasks/statistics.rake'
+
+require 'rspec/core/rake_task'
+
+RSpec::Core::RakeTask.new(:spec)
+
+task :default => :ci
+
+Bundler::GemHelper.install_tasks

data/app/assets/javascripts/triannon/annotations.js

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+// Place all the behaviors and hooks related to the matching controller here.
+// All this logic will automatically be available in application.js.

data/app/assets/javascripts/triannon/application.js

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+// This is a manifest file that'll be compiled into application.js, which will include all the files
+// listed below.
+//
+// Any JavaScript/Coffee file within this directory, lib/assets/javascripts, vendor/assets/javascripts,
+// or vendor/assets/javascripts of plugins, if any, can be referenced here using a relative path.
+//
+// It's not advisable to add code directly here, but if you do, it'll appear at the bottom of the
+// compiled file.
+//
+// Read Sprockets README (https://github.com/sstephenson/sprockets#sprockets-directives) for details
+// about supported directives.
+//
+//= require jquery
+//= require bootstrap-sprockets
+//= require_tree .

data/app/assets/stylesheets/triannon/annotations.css

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+/*
+  Place all the styles related to the matching controller here.
+  They will automatically be included in application.css.
+*/

data/app/assets/stylesheets/triannon/application.css.scss

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+/*
+ * This is a manifest file that'll be compiled into application.css, which will include all the files
+ * listed below.
+ *
+ * Any CSS and SCSS file within this directory, lib/assets/stylesheets, vendor/assets/stylesheets,
+ * or vendor/assets/stylesheets of plugins, if any, can be referenced here using a relative path.
+ *
+ * You're free to add application-wide styles to this file and they'll appear at the bottom of the
+ * compiled file so the styles you add here take precedence over styles defined in any styles
+ * defined in the other CSS/SCSS files in this directory. It is generally better to create a new
+ * file per style scope.
+ *
+ *= require_tree .
+ *= require_self
+ */
+
+@import "bootstrap-sprockets";
+@import "bootstrap";

data/app/controllers/triannon/annotations_controller.rb

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+require_dependency "triannon/application_controller"
+
+module Triannon
+  class AnnotationsController < ApplicationController
+    before_action :set_annotation, only: [:show, :edit, :update, :destroy]
+
+    # GET /annotations/annotations
+    def index
+      @annotations = Annotation.all
+    end
+
+    # GET /annotations/annotations/1
+    def show
+    end
+
+    # GET /annotations/annotations/new
+    def new
+      @annotation = Annotation.new
+    end
+
+    # GET /annotations/annotations/1/edit
+    def edit
+    end
+
+    # POST /annotations/annotations
+    def create
+      @annotation = Annotation.new(annotation_params)
+
+      if @annotation.save
+        redirect_to @annotation, notice: 'Annotation was successfully created.'
+      else
+        render :new
+      end
+    end
+
+    # PATCH/PUT /annotations/annotations/1
+    def update
+      if @annotation.update(annotation_params)
+        redirect_to @annotation, notice: 'Annotation was successfully updated.'
+      else
+        render :edit
+      end
+    end
+
+    # DELETE /annotations/annotations/1
+    def destroy
+      @annotation.destroy
+      redirect_to annotations_url, notice: 'Annotation was successfully destroyed.'
+    end
+
+    private
+      # Use callbacks to share common setup or constraints between actions.
+      def set_annotation
+        @annotation = Annotation.find(params[:id])
+      end
+
+      # Only allow a trusted parameter "white list" through.
+      def annotation_params
+        params.require(:annotation).permit(:data)
+      end
+  end
+end

data/app/controllers/triannon/application_controller.rb

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+module Triannon
+  class ApplicationController < ActionController::Base
+  end
+end

data/app/helpers/triannon/annotations_helper.rb

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+module Triannon
+  module AnnotationsHelper
+  end
+end

data/app/helpers/triannon/application_helper.rb

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+module Triannon
+  module ApplicationHelper
+  end
+end

data/app/models/triannon/annotation.rb

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+module Triannon
+  class Annotation < ActiveRecord::Base
+    
+    validates :data, presence: true,
+                      length: {minimum: 30}
+
+    # full validation should be optional?
+    #   minimal:  a subject with the right type and a hasTarget?  (see url)
+    # and perhaps modeled on this:
+    #   https://github.com/uq-eresearch/lorestore/blob/3e9aa1c69aafd3692c69aa39c64bfdc32b757892/src/main/resources/OAConstraintsSPARQL.json
+
+    def url
+      if graph_exists?
+        solution = graph.query(self.class.basic_query)
+        if solution && solution.size == 1
+          solution.first.s.to_s
+        # TODO:  raise exception if no URL?
+        end
+      end
+    end
+    
+    # FIXME:  this should be part of validation:  RDF.type should be RDF::OpenAnnotation.Annotation
+    def type
+      if graph_exists?
+        query = RDF::Query.new
+        query << [:s, RDF::OpenAnnotation.hasTarget, nil]
+        query << [:s, RDF.type, :type]
+        solution = graph.query(query)
+        if solution && solution.size == 1
+          solution.first.type.to_s
+        # TODO:  raise exception if no type?
+        end
+      end
+    end
+    
+    def has_target
+      # FIXME:  can have multiple targets per spec  (example 8)
+      # FIXME:  target might be more than a string (examples 14-17)
+      stmt = rdf.find_all { |s| 
+        s.predicate.to_s == RDF::OpenAnnotation.hasTarget
+      }.first
+      stmt.object.to_str if stmt
+    end
+    
+    def has_body
+      # FIXME:  can have multiple bodies per spec
+      stmt = rdf.find_all { |s| 
+        s.predicate.to_s == RDF::OpenAnnotation.hasBody
+      }.first
+      
+      # FIXME:  body can be other things
+      # if body is blank node and has character content, then return it
+      body = stmt.object if stmt
+      if body && body.is_a?(RDF::Node)
+        body_stmts = rdf.find_all { |s| s.subject == body }
+        if body_stmts && 
+            body_stmts.detect { |s| 
+              s.predicate.to_s == RDF.type &&
+              s.object.to_s == RDF::Content.ContentAsText
+            }
+          chars_stmt = body_stmts.detect { |s| s.predicate.to_s == RDF::Content.chars}
+          return chars_stmt.object.to_s if chars_stmt
+        end
+      end
+      nil
+    end
+
+    def motivated_by
+      if graph_exists?
+        q = self.class.basic_query.clone
+        q << [:s, RDF::OpenAnnotation.motivatedBy, :motivated_by]
+        solution = graph.query(q)
+        if solution && solution.size > 0
+          motivations = []
+          solution.each {|res|
+            motivations << res.motivated_by.to_s
+          }
+          motivations
+        # TODO:  raise exception if none?
+        end
+      end
+    end
+
+    def rdf
+      @rdf ||= JSON::LD::API.toRdf(json_ld) if json_ld
+    end
+
+    def graph
+      g = data_to_graph
+      @graph ||= g if g
+    end
+
+    # query for a subject with 
+    #  predicate  RDF::OpenAnnotation.hasTarget  
+    #  type of RDF::OpenAnnotation.Annotation
+    def self.basic_query
+      @basic_query ||= begin
+        basic_query = RDF::Query.new
+        basic_query << [:s, RDF.type, RDF::URI("http://www.w3.org/ns/oa#Annotation")]
+        basic_query << [:s, RDF::OpenAnnotation.hasTarget, nil]
+      end
+    end
+    
+private
+
+    # loads RDF::Graph from data attribute.  If data is in json-ld, converts it to turtle.
+    def data_to_graph
+      if data
+        case data
+          when /\{\s*\"@\w+\"/
+            json ||= JSON.parse(data)
+            g ||= RDF::Graph.new << JSON::LD::API.toRdf(json_ld) if json
+            self.data = g.dump(:ttl) if g
+          #when /http/
+          #  g ||= RDF::Graph.load(data, :format => :ttl)
+          else # assume turtle
+            g = RDF::Graph.new
+            g.from_ttl(data)
+            g = nil if g.size == 0
+        end
+      end
+      g
+    end
+
+    def json_ld
+      @json_ld ||= JSON.parse(data) rescue nil
+    end
+    
+    def graph_exists?
+      graph && graph.size > 0
+    end
+
+  end
+end

data/app/models/triannon/graph_validator.rb

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+module Triannon
+  class GraphValidator < ActiveModel::Validator
+    
+    def validate(anno)
+      graph_exists? anno
+      graph = anno.graph
+      basic_solution = graph.query(self.basic_query)
+      unless basic_solution && basic_solution.size == 1
+        anno.errors[:data] << 'The oa:Annotation class MUST be associated with each Annotation.'
+        anno.errors[:data] << 'each Annotation MUST have at least one target'
+      end      
+    end
+    
+    def graph_exists?(anno)
+      graph = anno.graph
+      unless graph && graph.size > 0
+        anno.errors[:data] << 'Unable to create non-null graph'
+      end
+    end
+    
+    # query for a subject with 
+    #  predicate  RDF::OpenAnnotation.hasTarget  
+    #  type of RDF::OpenAnnotation.Annotation
+    def self.basic_query
+      @@basic_query ||= begin
+        RDF::Query.new
+        basic_query << [:s, RDF.type, RDF::URI("http://www.w3.org/ns/oa#Annotation")]
+        basic_query << [:s, RDF::OpenAnnotation.hasTarget, nil]
+      end
+    end
+    
+  end
+end

data/app/views/layouts/triannon/application.html.erb

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+<!DOCTYPE html>
+<html>
+<head>
+  <meta charset="utf-8">
+  <meta http-equiv="X-UA-Compatible" content="IE=edge">
+  <meta name="viewport" content="width=device-width, initial-scale=1">
+  <title>Cerberus</title>
+  <%= stylesheet_link_tag    "triannon/application", media: "all" %>
+  <%= javascript_include_tag "triannon/application" %>
+  <%= csrf_meta_tags %>
+</head>
+<body>
+  <div class="container">
+    <!-- Static navbar -->
+    <div class="navbar navbar-default" role="navigation">
+      <div class="container-fluid">
+        <div class="navbar-header">
+          <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target=".navbar-collapse">
+            <span class="sr-only">Toggle navigation</span>
+            <span class="icon-bar"></span>
+            <span class="icon-bar"></span>
+            <span class="icon-bar"></span>
+          </button>
+          <%= link_to "Cerberus", root_path, class: 'navbar-brand' %>
+        </div>
+        <div class="navbar-collapse collapse">
+          <ul class="nav navbar-nav">
+          </ul>
+          <ul class="nav navbar-nav navbar-right">
+          </ul>
+        </div><!--/.nav-collapse -->
+      </div><!--/.container-fluid -->
+    </div>
+    <%= yield %>
+  </div>
+</body>
+</html>

data/app/views/triannon/annotations/_form.html.erb

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+<%= form_for(@annotation) do |f| %>
+  <% if @annotation.errors.any? %>
+    <div id="error_explanation">
+      <h2><%= pluralize(@annotation.errors.count, "error") %> prohibited this annotation from being saved:</h2>
+
+      <ul>
+      <% @annotation.errors.full_messages.each do |message| %>
+        <li><%= message %></li>
+      <% end %>
+      </ul>
+    </div>
+  <% end %>
+
+  <div class="field">
+    <%= f.label 'data (as JSON-LD)' %><br>
+    <%= f.text_area :data %>
+  </div>
+  <div class="actions">
+    <%= f.submit %>
+  </div>
+<% end %>

data/app/views/triannon/annotations/edit.html.erb

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+<%= render 'form' %>

data/app/views/triannon/annotations/index.html.erb

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+<h1>Annotations</h1>
+<ul>
+  <% @annotations.each do |a| %>
+  <li><%= link_to a.url, annotation_path(a) %></li>
+  <% end %>
+</ul>
+
+ <%= link_to 'New Annotation', new_annotation_path %>

data/app/views/triannon/annotations/new.html.erb

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+<%= render 'form' %>

data/app/views/triannon/annotations/show.html.erb

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+<h1>Annotation</h1>
+<p>
+<strong>Url (@id):</strong>
+<%= @annotation.url %>
+</p>
+<p>
+<strong>Target:</strong>
+<%= link_to @annotation.has_target, @annotation.has_target %>
+</p>
+<p>
+<strong>Body (blank node with text):</strong>
+<pre>
+<%= @annotation.has_body %>
+</pre>
+</p>
+<p>
+<strong>Motivated By:</strong>
+<% @annotation.motivated_by { |m|%>
+<%= link_to @annotation.m, @annotation.m %>
+<% } %>
+</p>
+<p>
+<strong>Type:</strong>
+<%= link_to @annotation.type, @annotation.type %>
+</p>
+
+<strong>Turtle:</strong>
+<pre>
+<%= @annotation.graph.dump(:ttl) %>
+</pre>
+
+<%= link_to "Back to List", annotations_path %>

data/config/routes.rb

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+Triannon::Engine.routes.draw do
+  root to: 'annotations#index'
+
+  resources :annotations
+end

data/db/migrate/20140912173046_create_triannon_annotations.rb

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+class CreateTriannonAnnotations < ActiveRecord::Migration
+  def change
+    create_table :triannon_annotations do |t|
+      t.text :data
+
+      t.timestamps null: false
+    end
+  end
+end

data/lib/generators/triannon/install_generator.rb

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+require 'rails/generators'
+
+module Triannon
+  class Install < Rails::Generators::Base
+    def inject_Triannon_routes
+      route "mount Triannon::Engine, at: 'annotations'"
+    end
+  end
+end

data/lib/tasks/triannon_tasks.rake

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+namespace :triannon do
+# desc "Explaining what the task does"
+# task :Triannon do
+#   # Task goes here
+# end
+end

data/lib/triannon.rb

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+require 'linkeddata'
+require 'rdf/open_annotation'
+require 'bootstrap-sass'
+
+module Triannon
+  require "triannon/engine"    
+end

data/lib/triannon/engine.rb

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+module Triannon
+  class Engine < ::Rails::Engine
+    isolate_namespace Triannon
+  end
+end

data/lib/triannon/version.rb

@@ -0,0 +1,3 @@
+module Triannon
+  VERSION = "0.0.3"
+end

metadata

@@ -0,0 +1,225 @@
+--- !ruby/object:Gem::Specification
+name: triannon
+version: !ruby/object:Gem::Version
+  version: 0.0.3
+platform: ruby
+authors:
+- Chris Beer
+- Naomi Dushay
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2014-09-23 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: rails
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 4.2.0.beta1
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 4.2.0.beta1
+- !ruby/object:Gem::Dependency
+  name: linkeddata
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rdf-open_annotation
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: bootstrap-sass
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: sass-rails
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 5.0.0.beta1
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 5.0.0.beta1
+- !ruby/object:Gem::Dependency
+  name: sqlite3
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+- !ruby/object:Gem::Dependency
+  name: rspec-rails
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+- !ruby/object:Gem::Dependency
+  name: engine_cart
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.4'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.4'
+- !ruby/object:Gem::Dependency
+  name: jettywrapper
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: capybara
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: 
+email:
+- cabeer@stanford.edu
+- ndushay@stanford.edu
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- README.md
+- Rakefile
+- app/assets/javascripts/triannon/annotations.js
+- app/assets/javascripts/triannon/application.js
+- app/assets/stylesheets/triannon/annotations.css
+- app/assets/stylesheets/triannon/application.css.scss
+- app/controllers/triannon/annotations_controller.rb
+- app/controllers/triannon/application_controller.rb
+- app/helpers/triannon/annotations_helper.rb
+- app/helpers/triannon/application_helper.rb
+- app/models/triannon/annotation.rb
+- app/models/triannon/graph_validator.rb
+- app/views/layouts/triannon/application.html.erb
+- app/views/triannon/annotations/_form.html.erb
+- app/views/triannon/annotations/edit.html.erb
+- app/views/triannon/annotations/index.html.erb
+- app/views/triannon/annotations/new.html.erb
+- app/views/triannon/annotations/show.html.erb
+- config/routes.rb
+- db/migrate/20140912173046_create_triannon_annotations.rb
+- lib/generators/triannon/install_generator.rb
+- lib/tasks/triannon_tasks.rake
+- lib/triannon.rb
+- lib/triannon/engine.rb
+- lib/triannon/version.rb
+homepage: 
+licenses:
+- Apache 2
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.2.0
+signing_key: 
+specification_version: 4
+summary: Rails engine for working with storage of OpenAnnotations stored in Fedora4
+test_files: []