transrate 0.3.0 → 0.3.1

checksums.yaml

@@ -1,7 +1,7 @@
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data/README.md

@@ -18,6 +18,10 @@
 
 This software is being actively developed. Please be aware that there may be bugs. If you find any, please report them on the [issue tracker](https://github.com/Blahah/transrate/issues).
 
+## Citation
+
+Transrate is pre-publication academic software. If you use it, please cite the github repository and the DOI: [![DOI](https://zenodo.org/badge/3687/Blahah/transrate.png)](http://dx.doi.org/10.5281/zenodo.11037).
+
 ## Documentation
 
 **transrate** is documented [on the website](http://hibberdlab.com/transrate).

data/bin/transrate

@@ -211,7 +211,7 @@ opts.assembly.split(',').each do |assembly|
   end
 
   # write contig metrics to file for each contig
-  outfile = "#{opts.outfile}_contigs.csv"
+  outfile = "#{opts.outfile}_#{File.basename(assembly)}_contigs.csv"
   logger.info "Writing contig metrics for each contig to #{outfile}"
   # have option to turn off, default on
   first=true

data/lib/transrate/version.rb

@@ -10,7 +10,7 @@ module Transrate
   module VERSION
     MAJOR = 0
     MINOR = 3
-    PATCH = 0
+    PATCH = 1
     BUILD = nil
 
     STRING = [MAJOR, MINOR, PATCH, BUILD].compact.join('.')

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: transrate
 version: !ruby/object:Gem::Version
-  version: 0.3.0
+  version: 0.3.1
 platform: ruby
 authors:
 - Richard Smith-Unna