transrate 0.0.6 → 0.0.7

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Files changed (6) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +1 -0
  3. data/lib/transrate/assembly.rb +2 -2
  4. data/lib/transrate/version.rb +2 -2
  5. data/transrate.gemspec +1 -1
  6. metadata +18 -38
checksums.yaml ADDED
@@ -0,0 +1,7 @@
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+ ---
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+ SHA1:
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+ metadata.gz: dfc72856627c9ac051379efaf1bd8e835851b16f
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+ data.tar.gz: cdd22a20b948adf89cb7707ceac2789a944f29a6
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+ SHA512:
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+ metadata.gz: 0ec91bfbb2991f784340b0df5fedb88bc4f009d5a51c2365ebd50bf8b573bbaedcd8cb2c7e516ca7281a8c00b807f6191834d3c58150aa0d6d9d8304e8fe57de
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+ data.tar.gz: 1aa48ef3d32ec27a17d25ecb586a4eca2085d2e1dc9499c8709fdd729d1902321d371fb0dd68a858da6989eb811195a914affbace3ea95533a4f008a698f58a2
data/.gitignore CHANGED
@@ -2,6 +2,7 @@
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  *.rbc
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  .bundle
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  .config
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+ Gemfile.lock
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  coverage
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  InstalledFiles
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  lib/bundler/man
data/lib/transrate/assembly.rb CHANGED
@@ -49,7 +49,7 @@ module Transrate
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  stats = self.basic_stats
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  stats.each_pair do |key, value|
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  ivar = "@#{key.gsub(/ /, '_')}".to_sym
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- self.instance_variable_set(key, value)
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+ self.instance_variable_set(ivar, value)
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  end
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  end
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@@ -106,4 +106,4 @@ module Transrate
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  end # Assembly
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- end # Transrate
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+ end # Transrate
data/lib/transrate/version.rb CHANGED
@@ -4,9 +4,9 @@ module Transrate
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  module VERSION
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  MAJOR = 0
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  MINOR = 0
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- PATCH = 6
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+ PATCH = 7
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  BUILD = nil
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  STRING = [MAJOR, MINOR, PATCH, BUILD].compact.join('.')
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  end
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- end # Transrate
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+ end # Transrate
data/transrate.gemspec CHANGED
@@ -13,7 +13,7 @@ Gem::Specification.new do |gem|
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  gem.files = `git ls-files`.split("\n")
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  gem.executables = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
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- gem.require_paths = %w[ lib ]
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+ gem.require_paths = %w( lib )
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  gem.add_dependency 'rake', '~> 10.1.0'
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  gem.add_dependency 'trollop', '~> 2.0'
metadata CHANGED
@@ -1,8 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: transrate
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  version: !ruby/object:Gem::Version
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- version: 0.0.6
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- prerelease:
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+ version: 0.0.7
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  platform: ruby
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  authors:
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  - Richard Smith
@@ -14,7 +13,6 @@ dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rake
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
@@ -22,7 +20,6 @@ dependencies:
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
@@ -30,7 +27,6 @@ dependencies:
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  - !ruby/object:Gem::Dependency
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  name: trollop
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
@@ -38,7 +34,6 @@ dependencies:
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
@@ -46,39 +41,34 @@ dependencies:
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  - !ruby/object:Gem::Dependency
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  name: which
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  - !ruby/object:Gem::Dependency
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  name: bio
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  - !ruby/object:Gem::Dependency
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  name: bettersam
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
@@ -86,7 +76,6 @@ dependencies:
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
@@ -94,55 +83,48 @@ dependencies:
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  - !ruby/object:Gem::Dependency
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  name: turn
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  - !ruby/object:Gem::Dependency
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  name: simplecov
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  - !ruby/object:Gem::Dependency
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  name: shoulda-context
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  - !ruby/object:Gem::Dependency
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  name: coveralls
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
@@ -150,13 +132,12 @@ dependencies:
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
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  version: 0.6.7
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- description: ! ' a library and command-line tool for quality assessment of de-novo
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- transcriptome assemblies '
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+ description: ' a library and command-line tool for quality assessment of de-novo transcriptome
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+ assemblies '
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  email: rds45@cam.ac.uk
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  executables:
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  - transrate
@@ -182,26 +163,25 @@ files:
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  - transrate.gemspec
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  homepage: https://github.com/blahah/assemblotron
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  licenses: []
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+ metadata: {}
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  post_install_message:
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  rdoc_options: []
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  require_paths:
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  - lib
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  required_ruby_version: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  required_rubygems_version: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
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  rubyforge_project:
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- rubygems_version: 1.8.24
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+ rubygems_version: 2.0.3
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  signing_key:
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- specification_version: 3
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+ specification_version: 4
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  summary: quality assessment of de-novo transcriptome assemblies
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  test_files: []