transrate 0.0.6 → 0.0.7

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: dfc72856627c9ac051379efaf1bd8e835851b16f
+  data.tar.gz: cdd22a20b948adf89cb7707ceac2789a944f29a6
+SHA512:
+  metadata.gz: 0ec91bfbb2991f784340b0df5fedb88bc4f009d5a51c2365ebd50bf8b573bbaedcd8cb2c7e516ca7281a8c00b807f6191834d3c58150aa0d6d9d8304e8fe57de
+  data.tar.gz: 1aa48ef3d32ec27a17d25ecb586a4eca2085d2e1dc9499c8709fdd729d1902321d371fb0dd68a858da6989eb811195a914affbace3ea95533a4f008a698f58a2

data/.gitignore

@@ -2,6 +2,7 @@
 *.rbc
 .bundle
 .config
+Gemfile.lock
 coverage
 InstalledFiles
 lib/bundler/man

data/lib/transrate/assembly.rb

@@ -49,7 +49,7 @@ module Transrate
       stats = self.basic_stats
       stats.each_pair do |key, value|
         ivar = "@#{key.gsub(/ /, '_')}".to_sym
-        self.instance_variable_set(key, value)
+        self.instance_variable_set(ivar, value)
       end
     end
 
@@ -106,4 +106,4 @@ module Transrate
 
   end # Assembly
 
-end # Transrate
+end # Transrate

data/lib/transrate/version.rb

@@ -4,9 +4,9 @@ module Transrate
   module VERSION
     MAJOR = 0
     MINOR = 0
-    PATCH = 6
+    PATCH = 7
     BUILD = nil
 
     STRING = [MAJOR, MINOR, PATCH, BUILD].compact.join('.')
   end
-end # Transrate
+end # Transrate

data/transrate.gemspec

@@ -13,7 +13,7 @@ Gem::Specification.new do |gem|
 
   gem.files = `git ls-files`.split("\n")
   gem.executables = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
-  gem.require_paths = %w[ lib ]
+  gem.require_paths = %w( lib )
 
   gem.add_dependency 'rake', '~> 10.1.0'
   gem.add_dependency 'trollop', '~> 2.0'

metadata

@@ -1,8 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: transrate
 version: !ruby/object:Gem::Version
-  version: 0.0.6
-  prerelease: 
+  version: 0.0.7
 platform: ruby
 authors:
 - Richard Smith
@@ -14,7 +13,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -22,7 +20,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -30,7 +27,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: trollop
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -38,7 +34,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -46,39 +41,34 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: which
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
   name: bio
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
   name: bettersam
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -86,7 +76,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -94,55 +83,48 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: turn
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
   name: simplecov
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
   name: shoulda-context
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - '>='
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
   name: coveralls
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -150,13 +132,12 @@ dependencies:
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
         version: 0.6.7
-description: ! ' a library and command-line tool for quality assessment of de-novo
-  transcriptome assemblies '
+description: ' a library and command-line tool for quality assessment of de-novo transcriptome
+  assemblies '
 email: rds45@cam.ac.uk
 executables:
 - transrate
@@ -182,26 +163,25 @@ files:
 - transrate.gemspec
 homepage: https://github.com/blahah/assemblotron
 licenses: []
+metadata: {}
 post_install_message: 
 rdoc_options: []
 require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - '>='
     - !ruby/object:Gem::Version
       version: '0'
 required_rubygems_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - '>='
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 1.8.24
+rubygems_version: 2.0.3
 signing_key: 
-specification_version: 3
+specification_version: 4
 summary: quality assessment of de-novo transcriptome assemblies
 test_files: []