transfuse 0.4.5 → 0.4.6

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Files changed (5) hide show
  1. checksums.yaml +4 -4
  2. data/lib/transfuse/version.rb +1 -1
  3. data/lib/transfuse.rb +2 -2
  4. data/transfuse.gemspec +2 -3
  5. metadata +22 -42
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  ---
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  SHA1:
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- metadata.gz: 94b55c79a713ddce1aaba5c302e3ce0d7a3dbd4a
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- data.tar.gz: 4472cc10a3a5a5e29e11bc22ad3d17b07fb7c332
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+ metadata.gz: 8875ba5243bd12d1f74f35879f2c505ffd480881
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+ data.tar.gz: 98c7665892f464bb62eeeb6901d3e7305491699f
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  SHA512:
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- metadata.gz: 8b61add12cd4c12db7ae2a65739c7895ea31c82b188a717f17e860a2009036a28962d53e275e67e244ef3f85e21a291ca15384df14ec5c1c51606a6893c2e25c
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- data.tar.gz: 1443f82858f58c9371f2223fb91fefa802cf809aa6802bbb84c014781641304e8c1a02d9dc6e289291e8b52569bce71438931472b18dfc009d9e9472fcc130c4
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+ metadata.gz: 5d62478348919947146b3413920f3361d465756201e6c62cb08eb0fea9e9c64822fc699c24a088614412b44d0f40710e679908f555bbf7f75345d216b1cc52fb
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+ data.tar.gz: 39cab59f74296f2be2893906cc19d33212fab43f7e3643a4b1bead5ce3bdafa8b49a62623f625e67b61583f48f767c1675791cd3cf2fc5614e9fa0004cab3dae
data/lib/transfuse/version.rb CHANGED
@@ -8,7 +8,7 @@ module Transfuse
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  module VERSION
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  MAJOR = 0
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  MINOR = 4
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- PATCH = 5
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+ PATCH = 6
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  BUILD = nil
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  STRING = [MAJOR, MINOR, PATCH, BUILD].compact.join('.')
data/lib/transfuse.rb CHANGED
@@ -1,5 +1,5 @@
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+ require 'transfuse/transfuse'
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+ require 'transfuse/version'
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  require 'transfuse/cluster'
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  require 'transfuse/cmd'
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  require 'transfuse/consensus'
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- require 'transfuse/transfuse'
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- require 'transfuse/version'
data/transfuse.gemspec CHANGED
@@ -5,7 +5,7 @@ Gem::Specification.new do |gem|
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  gem.name = 'transfuse'
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  gem.version = Transfuse::VERSION::STRING.dup
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  gem.date = '2015-05-22'
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- gem.summary = "Merge assemblies"
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+ gem.summary = "Merge multiple transcriptome assemblies"
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  gem.description = "See summary"
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  gem.authors = ["Richard Smith-Unna", "Chris Boursnell"]
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  gem.email = ['rds45@cam.ac.uk', 'cmb211@cam.ac.uk']
@@ -15,12 +15,11 @@ Gem::Specification.new do |gem|
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  gem.homepage = 'https://github.com/cboursnell/transfuse'
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  gem.license = 'MIT'
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+ gem.add_dependency 'transrate', '~> 1.0', '>= 1.0.1'
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  gem.add_dependency 'trollop', '~> 2.1', '>= 2.1.2'
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  gem.add_dependency 'bio', '~> 1.5', '>= 1.5.0'
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  gem.add_dependency 'fixwhich', '~> 1.0', '>= 1.0.2'
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  gem.add_dependency 'bindeps', '~> 1.2', '>= 1.2.0'
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- gem.add_dependency 'transrate', '~> 1.0', '>= 1.0.1'
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- gem.add_dependency 'bundler', '~> 1.10', '>= 1.10.6'
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  gem.add_development_dependency 'rake', '~> 10.4', '>= 10.4.2'
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  gem.add_development_dependency 'turn', '~> 0.9', '>= 0.9.7'
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: transfuse
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  version: !ruby/object:Gem::Version
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- version: 0.4.5
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+ version: 0.4.6
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  platform: ruby
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  authors:
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  - Richard Smith-Unna
@@ -11,6 +11,26 @@ bindir: bin
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  cert_chain: []
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  date: 2015-05-22 00:00:00.000000000 Z
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  dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: transrate
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '1.0'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 1.0.1
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '1.0'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 1.0.1
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  - !ruby/object:Gem::Dependency
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  name: trollop
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  requirement: !ruby/object:Gem::Requirement
@@ -91,46 +111,6 @@ dependencies:
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  - - ">="
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  - !ruby/object:Gem::Version
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  version: 1.2.0
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- - !ruby/object:Gem::Dependency
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- name: transrate
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- requirement: !ruby/object:Gem::Requirement
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- requirements:
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- - - "~>"
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- - !ruby/object:Gem::Version
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- version: '1.0'
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 1.0.1
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- type: :runtime
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- prerelease: false
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- version_requirements: !ruby/object:Gem::Requirement
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- requirements:
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- - - "~>"
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- - !ruby/object:Gem::Version
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- version: '1.0'
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 1.0.1
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- - !ruby/object:Gem::Dependency
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- name: bundler
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- requirement: !ruby/object:Gem::Requirement
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- requirements:
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- - - "~>"
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- - !ruby/object:Gem::Version
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- version: '1.10'
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 1.10.6
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- type: :runtime
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- prerelease: false
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- version_requirements: !ruby/object:Gem::Requirement
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- requirements:
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- - - "~>"
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- - !ruby/object:Gem::Version
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- version: '1.10'
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 1.10.6
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  - !ruby/object:Gem::Dependency
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  name: rake
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  requirement: !ruby/object:Gem::Requirement
@@ -283,5 +263,5 @@ rubyforge_project:
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  rubygems_version: 2.2.2
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  signing_key:
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  specification_version: 4
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- summary: Merge assemblies
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+ summary: Merge multiple transcriptome assemblies
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  test_files: []