traject_sequel_writer 0.9.0
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- checksums.yaml +7 -0
- data/LICENSE.txt +21 -0
- data/README.md +114 -0
- data/Rakefile +11 -0
- data/bin/console +14 -0
- data/bin/setup +7 -0
- data/lib/traject/sequel_writer.rb +142 -0
- data/lib/traject_sequel_writer/version.rb +3 -0
- data/lib/traject_sequel_writer.rb +5 -0
- data/test/test_helper.rb +41 -0
- data/test/test_traject_sequel_writer.rb +113 -0
- metadata +126 -0
checksums.yaml
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data.tar.gz: 46a744c5574a998dd440aa8db3c966cedcc8c115eeb632142dae8ef8a170d05df25c152943720cecadd9e1b140a048bee82cbaf46f13cefee9b51cf6a3c9cc13
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data/LICENSE.txt
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The MIT License (MIT)
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Copyright (c) 2015 Jonathan Rochkind
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in
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all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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THE SOFTWARE.
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data/README.md
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[![Build Status](https://travis-ci.org/traject/traject_sequel_writer.svg)](https://travis-ci.org/traject/traject_sequel_writer)
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# TrajectSequelWriter
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A `Writer` plugin for [traject](https://github.com/traject/traject), that writes to an rdbms using [Sequel](https://github.com/jeremyevans/sequel).
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The writer can be used as standard, as the destination of your indexing pipeline.
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It was actually written for a use case where it's used as a "side effect" in a traject `each_record`, writing different data out to an rdbms on the side, while the main indexing is to Solr. This ends up a bit hacky at present but works.
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## Installation
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We recommend using bundler with a traject project that has dependencies.
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Add this line to your traject project's Gemfile:
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```ruby
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gem 'traject_sequel_writer', "~> 1.0"
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```
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And then execute:
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$ bundle
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Or if you don't use bundler with your traject project, install directly like:
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$ gem install traject_sequel_writer
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## Usage
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As a standard traject writer, you can just set a few settings:
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~~~ruby
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settings do
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provide "writer_class_name", "Traject::SequelWriter"
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# ...
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~~~
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You can set up the connection with a [Sequel connection string](http://sequel.jeremyevans.net/rdoc/files/doc/opening_databases_rdoc.html). Here's
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an example for JDBC mysql (under JRuby). Note we discovered the `&characterEncoding=utf8` arg to the JDBC adapter was important.
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Connection string parameters may vary for platform (MRI vs JDBC in Jruby) and database.
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~~~ruby
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provide "sequel_writer.connection_string", "jdbc:mysql://dbhost.example.com:3306/database_name?characterEncoding=utf8&user=user&password=password"
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# You also need to tell the writer what table to write to; the table should already exist
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provide "sequel_writer.table_name", "my_table"
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~~~
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By default, the writer will try to write to every non-pk column defined in your table -- if your Traject::Context output_hash's is missing
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a value for a column, null will be inserted for that column. Or you can explicitly define which columns to use:
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~~~ruby
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provide "sequel_writer.columns", ["column1", "column2"]
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~~~~
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Still, your Context output_hash's must provide output key/values for every column mentioned, or else
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null will be inserted for that column. Keys in the output_hash that don't match output columns
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will be ignored.
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### All settings
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* `sequel_writer.connection_string` : [Sequel connection string](http://sequel.jeremyevans.net/rdoc/files/doc/opening_databases_rdoc.html)
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* `sequel_writer.database`: As an alternative to `sequel_connection_string`, pass in an already instantiated Sequel::Database object, as in from `Sequel.connect`
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* `sequel_writer.table_name`: Required, what table to write to.
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* `sequel_writer.column_names` Which columns to write to, by default all non-pk columns in the table. Since we use multi-row import statements,
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column_names not present in the Traject::Context#output_hash will end up with SQL `null` inserted.
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* `sequel_writer.thread_pool_size` Number of threads to use for writing to DB. Default 1, should be good.
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* `sequel_writer.batch_size` Count of records to batch together in a single multi-row SQL `INSERT`. Default 100. Should be good.
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### Using as a side-channel additional output
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In one project, we wanted to index to Solr. But we wanted to calculate completely different output to send
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as a side-channel to an RDBMS table. Here's a little bit hacky way to do that, that would really work
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for any traject writer.
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~~~ruby
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sequel_writer = Traject::SequelWriter.new(
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'sequel_writer.connection_string' => conn_str,
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'sequel_writer.table_name' => 'my_table')
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each_record do |record, context|
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# imagine this returns an array of hashes, each of which represents a row
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# you want to insert into the table.
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rows_to_insert = make_rows_to_insert(record)
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rows_to_insert.each do |row|
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# Don't re-use the variable name `context`, can cause accidental shared concurrent state
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sequel_writer.put( Traject::Context.new(:output_hash => row, :source_record => record) )
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end
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end
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# Don't forget to close our side-channel sequel writer, to make
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# sure anything queued gets written
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after_processing do
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sequel_writer.close
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end
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~~~
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## Development
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After checking out the repo, run `bin/setup` to install dependencies. Then, run `bin/console` for an interactive prompt that will allow you to experiment.
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To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release` to create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
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## Contributing
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1. Fork it ( https://github.com/[my-github-username]/traject_sequel_writer/fork )
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2. Create your feature branch (`git checkout -b my-new-feature`)
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3. Commit your changes (`git commit -am 'Add some feature'`)
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4. Push to the branch (`git push origin my-new-feature`)
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5. Create a new Pull Request
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data/Rakefile
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data/bin/console
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#!/usr/bin/env ruby
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require "bundler/setup"
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require "traject_sequel_writer"
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# You can add fixtures and/or initialization code here to make experimenting
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# with your gem easier. You can also use a different console, if you like.
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# (If you use this, don't forget to add pry to your Gemfile!)
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# require "pry"
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# Pry.start
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require "irb"
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IRB.start
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data/bin/setup
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require 'traject'
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require 'traject/util'
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require 'traject/indexer/settings'
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require 'sequel'
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require 'thread'
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module Traject
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class SequelWriter
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# Sequel db connection object
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attr_reader :sequel_db
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# Sequel table/relation object
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attr_reader :db_table
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def initialize(argSettings)
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@settings = Traject::Indexer::Settings.new(argSettings)
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unless (!! @settings["sequel_writer.connection_string"]) ^ (!! @settings["sequel_writer.database"])
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raise ArgumentError, "Exactly one of either setting `sequel_writer.connection_string` or `sequel_writer.database` is required"
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end
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unless @settings["sequel_writer.table_name"]
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raise ArgumentError, "setting `sequel_writer.table_name` is required"
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end
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@sequel_db = @settings["sequel_writer.database"] || Sequel.connect(@settings["sequel_writer.connection_string"])
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@db_table = @sequel_db[ @settings["sequel_writer.table_name"].to_sym ]
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# Which keys to send to columns? Can be set explicitly with sequel_writer.columns,
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# or we'll use all non-PK columns introspected from the db schema.
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@column_names = @settings["sequel_writer.columns"]
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unless @column_names
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@column_names = @sequel_db.schema( @db_table.first_source_table ).find_all do |column, info|
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info[:primary_key] != true
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end.collect {|pair| pair.first}
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end
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@column_names = @column_names.collect {|c| c.to_sym}
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@column_names = @column_names.freeze
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# How many threads to use for the writer?
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# if our thread pool settings are 0, it'll just create a null threadpool that
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# executes in calling context. Default to 1, for waiting on DB I/O.
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@thread_pool_size = (@settings["sequel_writer.thread_pool"] || 1).to_i
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@batch_size = (@settings["sequel_writer.batch_size"] || 100).to_i
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@batched_queue = Queue.new
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@thread_pool = Traject::ThreadPool.new(@thread_pool_size)
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@after_send_batch_callbacks = Array(@settings["sequel_writer.after_send_batch"] || [])
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end
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# Get the logger from the settings, or default to an effectively null logger
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def logger
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@settings["logger"] ||= Yell.new(STDERR, :level => "gt.fatal") # null logger
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end
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def put(context)
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@thread_pool.raise_collected_exception!
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@batched_queue << context
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if @batched_queue.size >= @batch_size
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batch = Traject::Util.drain_queue(@batched_queue)
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@thread_pool.maybe_in_thread_pool(batch) {|batch_arg| send_batch(batch_arg) }
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end
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end
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def close
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@thread_pool.raise_collected_exception!
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# Finish off whatever's left. Do it in the thread pool for
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# consistency, and to ensure expected order of operations, so
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# it goes to the end of the queue behind any other work.
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batch = Traject::Util.drain_queue(@batched_queue)
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@thread_pool.maybe_in_thread_pool(batch) {|batch_arg| send_batch(batch_arg) }
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# Wait for shutdown, and time it.
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logger.debug "#{self.class.name}: Shutting down thread pool, waiting if needed..."
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elapsed = @thread_pool.shutdown_and_wait
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if elapsed > 60
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logger.warn "Waited #{elapsed} seconds for all threads, you may want to increase sequel_writer.thread_pool (currently #{@settings["solr_writer.thread_pool"]})"
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end
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logger.debug "#{self.class.name}: Thread pool shutdown complete"
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# check again now that we've waited, there could still be some
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# that didn't show up before.
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@thread_pool.raise_collected_exception!
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@sequel_db.disconnect
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end
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def send_batch(batch)
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list_of_arrays = hashes_to_arrays(@column_names, batch.collect {|context| context.output_hash})
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begin
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db_table.import @column_names, list_of_arrays
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rescue Sequel::DatabaseError, Sequel::PoolTimeout => batch_exception
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# We rescue PoolTimeout too, because we're mysteriously getting those, they are maybe dropped DB connections?
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# Try them each one by one, mostly so we can get a reasonable error message with particular record.
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logger.warn("SequelWriter: error (#{batch_exception}) inserting batch of #{list_of_arrays.count} starting from system_id #{batch.first.output_hash['system_id']}, retrying individually...")
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batch.each do |context|
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send_single(context)
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end
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end
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@after_send_batch_callbacks.each do |callback|
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callback.call(batch, self)
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end
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end
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def send_single(context)
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db_table.insert @column_names, hash_to_array(@column_names, context.output_hash)
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rescue Sequel::DatabaseError => e
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logger.error("SequelWriter: Could not insert row: #{context.output_hash}: #{e}")
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raise e
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end
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# Turn an array of hashes into an array of arrays,
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# with each array being a hashes values matching column_names, in that order
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def hashes_to_arrays(column_names, list_of_hashes)
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list_of_hashes.collect do |h|
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hash_to_array(column_names, h)
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end
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end
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def hash_to_array(column_names, hash)
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column_names.collect {|c| hash[c.to_s]}
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end
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def after_send_batch(&block)
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@after_send_batch_callbacks << block
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end
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end
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end
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data/test/test_helper.rb
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require 'minitest/autorun'
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require 'minitest/spec'
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require 'traject_sequel_writer'
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require 'minitest/autorun'
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require 'sequel'
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# Create a temporary sqlite db for tests, remove it when we're done
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require 'fileutils'
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FileUtils::mkdir_p 'tmp'
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TEST_SEQUEL_CONNECT_STR = if defined? JRUBY_VERSION
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"jdbc:sqlite:tmp/testing.sqlite"
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else
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"sqlite://tmp/testing.sqlite"
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end
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db = Sequel.connect(TEST_SEQUEL_CONNECT_STR)
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db.drop_table?(:test)
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db.create_table(:test) do
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primary_key :id
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Time :created_at
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String :string_a
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String :string_b
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String :string_c
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TrueClass :boolean_a
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Integer :int_a
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31
|
+
end
|
32
|
+
|
33
|
+
db[:test].delete
|
34
|
+
# Disconnect it now, make the code do the work
|
35
|
+
db.disconnect
|
36
|
+
|
37
|
+
|
38
|
+
|
39
|
+
MiniTest.after_run do
|
40
|
+
File.unlink("tmp/testing.sqlite")
|
41
|
+
end
|
@@ -0,0 +1,113 @@
|
|
1
|
+
require 'test_helper'
|
2
|
+
|
3
|
+
require 'traject/sequel_writer'
|
4
|
+
|
5
|
+
describe "Traject::SequelWriter" do
|
6
|
+
describe "in use" do
|
7
|
+
before do
|
8
|
+
@writer = writer
|
9
|
+
write_mock_docs(@writer, 63)
|
10
|
+
end
|
11
|
+
|
12
|
+
after do
|
13
|
+
@writer.db_table.delete
|
14
|
+
end
|
15
|
+
|
16
|
+
it "writes" do
|
17
|
+
assert_equal 63, @writer.db_table.count
|
18
|
+
|
19
|
+
@writer.db_table.each do |hash|
|
20
|
+
assert_kind_of String, hash[:string_a], "string_a is not filled out for #{hash}"
|
21
|
+
assert_kind_of String, hash[:string_b], "string_b is not filled out for #{hash}"
|
22
|
+
assert_nil hash[:string_c]
|
23
|
+
assert_includes [true, false], hash[:boolean_a], "boolean_a is not true or false for #{hash}"
|
24
|
+
assert_kind_of Integer, hash[:int_a]
|
25
|
+
end
|
26
|
+
end
|
27
|
+
end
|
28
|
+
|
29
|
+
|
30
|
+
it "writes with sequel.database parameter instead of connection_str" do
|
31
|
+
sequel_db = Sequel.connect(TEST_SEQUEL_CONNECT_STR)
|
32
|
+
|
33
|
+
writer = writer("sequel_writer.connection_string" => nil,
|
34
|
+
"sequel_writer.database" => sequel_db)
|
35
|
+
|
36
|
+
write_mock_docs(writer, 63)
|
37
|
+
|
38
|
+
assert_equal 63, writer.db_table.count
|
39
|
+
|
40
|
+
writer.db_table.each do |hash|
|
41
|
+
assert_kind_of String, hash[:string_a], "string_a is not filled out for #{hash}"
|
42
|
+
assert_kind_of String, hash[:string_b], "string_b is not filled out for #{hash}"
|
43
|
+
assert_nil hash[:string_c]
|
44
|
+
assert_includes [true, false], hash[:boolean_a], "boolean_a is not true or false for #{hash}"
|
45
|
+
assert_kind_of Integer, hash[:int_a]
|
46
|
+
end
|
47
|
+
|
48
|
+
writer.db_table.delete
|
49
|
+
end
|
50
|
+
|
51
|
+
describe "after_send_batch" do
|
52
|
+
before do
|
53
|
+
@writer = writer
|
54
|
+
|
55
|
+
@received_in_batches = Queue.new
|
56
|
+
|
57
|
+
@writer.after_send_batch do |batch, writer|
|
58
|
+
assert_kind_of Traject::SequelWriter, writer
|
59
|
+
assert_kind_of Array, batch
|
60
|
+
|
61
|
+
batch.each {|c| @received_in_batches.push c }
|
62
|
+
end
|
63
|
+
|
64
|
+
@num_docs = 63
|
65
|
+
|
66
|
+
write_mock_docs(@writer, @num_docs)
|
67
|
+
end
|
68
|
+
|
69
|
+
after do
|
70
|
+
@writer.db_table.delete
|
71
|
+
end
|
72
|
+
|
73
|
+
it "calls callbacks" do
|
74
|
+
assert_equal @num_docs, @received_in_batches.size
|
75
|
+
end
|
76
|
+
end
|
77
|
+
|
78
|
+
describe "errors" do
|
79
|
+
it "raises without required settings" do
|
80
|
+
assert_raises(ArgumentError) { Traject::SequelWriter.new }
|
81
|
+
assert_raises(ArgumentError) { Traject::SequelWriter.new("sequel_writer.connect_string" => "foo") }
|
82
|
+
assert_raises(ArgumentError) { Traject::SequelWriter.new("sequel_writer.table_name" => "foo") }
|
83
|
+
end
|
84
|
+
end
|
85
|
+
|
86
|
+
|
87
|
+
# Helpers
|
88
|
+
|
89
|
+
def write_mock_docs(writer, num)
|
90
|
+
(1..num).each do |i|
|
91
|
+
context = Traject::Indexer::Context.new
|
92
|
+
context.output_hash.merge!(
|
93
|
+
"id" => "ignore_me", # should ignore pk by default
|
94
|
+
"string_a" => "String_a #{i}",
|
95
|
+
"string_b" => "String_b #{i}",
|
96
|
+
"no_such_column" => "ignore me",
|
97
|
+
"boolean_a" => (i % 2 == 0) ? true : false,
|
98
|
+
"int_a" => i
|
99
|
+
)
|
100
|
+
writer.put context
|
101
|
+
end
|
102
|
+
writer.close
|
103
|
+
end
|
104
|
+
|
105
|
+
def writer(args = {})
|
106
|
+
args = {"sequel_writer.connection_string" => TEST_SEQUEL_CONNECT_STR,
|
107
|
+
"sequel_writer.table_name" => "test",
|
108
|
+
"sequel_writer.batch_size" => 5}.merge(args)
|
109
|
+
return Traject::SequelWriter.new(args)
|
110
|
+
end
|
111
|
+
|
112
|
+
|
113
|
+
end
|
metadata
ADDED
@@ -0,0 +1,126 @@
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
|
+
name: traject_sequel_writer
|
3
|
+
version: !ruby/object:Gem::Version
|
4
|
+
version: 0.9.0
|
5
|
+
platform: ruby
|
6
|
+
authors:
|
7
|
+
- Jonathan Rochkind
|
8
|
+
autorequire:
|
9
|
+
bindir: bin
|
10
|
+
cert_chain: []
|
11
|
+
date: 2015-07-09 00:00:00.000000000 Z
|
12
|
+
dependencies:
|
13
|
+
- !ruby/object:Gem::Dependency
|
14
|
+
name: traject
|
15
|
+
requirement: !ruby/object:Gem::Requirement
|
16
|
+
requirements:
|
17
|
+
- - "~>"
|
18
|
+
- !ruby/object:Gem::Version
|
19
|
+
version: '2.0'
|
20
|
+
type: :runtime
|
21
|
+
prerelease: false
|
22
|
+
version_requirements: !ruby/object:Gem::Requirement
|
23
|
+
requirements:
|
24
|
+
- - "~>"
|
25
|
+
- !ruby/object:Gem::Version
|
26
|
+
version: '2.0'
|
27
|
+
- !ruby/object:Gem::Dependency
|
28
|
+
name: sequel
|
29
|
+
requirement: !ruby/object:Gem::Requirement
|
30
|
+
requirements:
|
31
|
+
- - "~>"
|
32
|
+
- !ruby/object:Gem::Version
|
33
|
+
version: '4.22'
|
34
|
+
type: :runtime
|
35
|
+
prerelease: false
|
36
|
+
version_requirements: !ruby/object:Gem::Requirement
|
37
|
+
requirements:
|
38
|
+
- - "~>"
|
39
|
+
- !ruby/object:Gem::Version
|
40
|
+
version: '4.22'
|
41
|
+
- !ruby/object:Gem::Dependency
|
42
|
+
name: minitest
|
43
|
+
requirement: !ruby/object:Gem::Requirement
|
44
|
+
requirements:
|
45
|
+
- - "~>"
|
46
|
+
- !ruby/object:Gem::Version
|
47
|
+
version: '5.0'
|
48
|
+
type: :development
|
49
|
+
prerelease: false
|
50
|
+
version_requirements: !ruby/object:Gem::Requirement
|
51
|
+
requirements:
|
52
|
+
- - "~>"
|
53
|
+
- !ruby/object:Gem::Version
|
54
|
+
version: '5.0'
|
55
|
+
- !ruby/object:Gem::Dependency
|
56
|
+
name: bundler
|
57
|
+
requirement: !ruby/object:Gem::Requirement
|
58
|
+
requirements:
|
59
|
+
- - "~>"
|
60
|
+
- !ruby/object:Gem::Version
|
61
|
+
version: '1.9'
|
62
|
+
type: :development
|
63
|
+
prerelease: false
|
64
|
+
version_requirements: !ruby/object:Gem::Requirement
|
65
|
+
requirements:
|
66
|
+
- - "~>"
|
67
|
+
- !ruby/object:Gem::Version
|
68
|
+
version: '1.9'
|
69
|
+
- !ruby/object:Gem::Dependency
|
70
|
+
name: rake
|
71
|
+
requirement: !ruby/object:Gem::Requirement
|
72
|
+
requirements:
|
73
|
+
- - "~>"
|
74
|
+
- !ruby/object:Gem::Version
|
75
|
+
version: '10.0'
|
76
|
+
type: :development
|
77
|
+
prerelease: false
|
78
|
+
version_requirements: !ruby/object:Gem::Requirement
|
79
|
+
requirements:
|
80
|
+
- - "~>"
|
81
|
+
- !ruby/object:Gem::Version
|
82
|
+
version: '10.0'
|
83
|
+
description:
|
84
|
+
email:
|
85
|
+
- jonathan@dnil.net
|
86
|
+
executables: []
|
87
|
+
extensions: []
|
88
|
+
extra_rdoc_files: []
|
89
|
+
files:
|
90
|
+
- LICENSE.txt
|
91
|
+
- README.md
|
92
|
+
- Rakefile
|
93
|
+
- bin/console
|
94
|
+
- bin/setup
|
95
|
+
- lib/traject/sequel_writer.rb
|
96
|
+
- lib/traject_sequel_writer.rb
|
97
|
+
- lib/traject_sequel_writer/version.rb
|
98
|
+
- test/test_helper.rb
|
99
|
+
- test/test_traject_sequel_writer.rb
|
100
|
+
homepage: https://github.com/traject/traject_sequel_writer
|
101
|
+
licenses:
|
102
|
+
- MIT
|
103
|
+
metadata: {}
|
104
|
+
post_install_message:
|
105
|
+
rdoc_options: []
|
106
|
+
require_paths:
|
107
|
+
- lib
|
108
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
109
|
+
requirements:
|
110
|
+
- - ">="
|
111
|
+
- !ruby/object:Gem::Version
|
112
|
+
version: '0'
|
113
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
114
|
+
requirements:
|
115
|
+
- - ">="
|
116
|
+
- !ruby/object:Gem::Version
|
117
|
+
version: '0'
|
118
|
+
requirements: []
|
119
|
+
rubyforge_project:
|
120
|
+
rubygems_version: 2.4.5
|
121
|
+
signing_key:
|
122
|
+
specification_version: 4
|
123
|
+
summary: Plug-in for traject, write to an rdbms with Sequel gem
|
124
|
+
test_files:
|
125
|
+
- test/test_helper.rb
|
126
|
+
- test/test_traject_sequel_writer.rb
|