taxon_reporter 0.0.1

checksums.yaml

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data/.gitignore

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+*.gem
+*.rbc
+.bundle
+.config
+.yardoc
+Gemfile.lock
+InstalledFiles
+_yardoc
+coverage
+doc/
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp

data/.ruby-version

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+2.0.0-p353

data/.travis.yml

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+language: ruby
+rvm:
+  - 2.0.0

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in taxon_reporter.gemspec
+gemspec
+
+group :test do
+  gem 'rspec', '~> 2.14'
+  gem 'webmock', '~> 1.17'
+  gem 'coveralls', '~> 0.7', require: false
+  # gem 'capybara', '~> 2.2'
+  # gem 'travis-lint', '~> 1.7'
+  # gem 'launchy', '~> 2.4'
+end

data/LICENSE.txt

@@ -0,0 +1,22 @@
+Copyright (c) 2014 Nathan Wilson
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

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+taxon_reporter
+=======
+
+taxon_reporter is a Ruby gem that supports collecting data from a variety of biodiversity source about a given taxon and its descendants
+
+[![Continuous Integration Status][1]][2]
+[![Coverage Status][3]][4]
+[![CodePolice][5]][6]
+[![Dependency Status][7]][8]
+
+
+Install
+-------
+
+General requirements:
+
+  - Ruby version 2.0 or higher
+  - MySQL server version 5.1 or higher
+  - Web Server for production (Nginx, or Apache)
+
+
+Running Tests
+-------------
+
+    bundle exec rake
+
+Also look at [.travis.yml][9] file for more information
+
+
+Copyright
+---------
+
+Code: [Nathan Wilson][10],[Dmitry Mozzherin][11] 
+
+Copyright (c) 2014 [Marine Biological Laboratory][12]. See [LICENSE][13] for
+further details.
+
+[1]: https://secure.travis-ci.org/EOL/taxon_reporter.png
+[2]: http://travis-ci.org/EOL/taxon_reporter
+[3]: https://coveralls.io/repos/EOL/taxon_reporter/badge.png?branch=master
+[4]: https://coveralls.io/r/EOL/taxon_reporter?branch=master
+[5]: https://codeclimate.com/github/EOL/taxon_reporter.png
+[6]: https://codeclimate.com/github/EOL/taxon_reporter
+[7]: https://gemnasium.com/EOL/taxon_reporter.png
+[8]: https://gemnasium.com/EOL/taxon_reporter
+[9]: https://github.com/EOL/taxon_reporter/blob/master/.travis.yml
+[10]: https://github.com/nwilson-EOL
+[11]: https://github.com/dimus
+[12]: http://mbl.edu
+[13]: https://github.com/EOL/taxon_reporter/blob/master/LICENSE
+
+----
+
+
+# TaxonReporter
+
+Supports collecting data from a variety of biodiversity source about a given taxon and its descendants
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+    gem 'taxon_reporter'
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install taxon_reporter
+
+## Usage
+
+### Required for TaxonEval
+
+To get a TaxonReporter::Report about a taxon:
+
+    report = TaxonReporter.report("Giraffa")
+
+A Report is a set of Taxons.
+Report#fields
+Report#values(field)
+
+A Taxon is a set of Records.
+Taxon#fields
+Taxon#values(field)
+
+A Record is a Field and a value (String).
+
+A Field is a DataSource and a name (String)
+
+A DataSource is a name (String), and a url (String)
+DataSource#records(name)
+
+### Useful Additions
+
+To get the available report fields ("EOL:richness", source => "EOL", name => "richness"):
+
+    fields = TaxonReporter.fields
+
+To get a set of default data sources:
+
+    data_sources = TaxonReporter.data_sources
+
+To create a report from a different set of data sources:
+
+    TaxonReporter.add_data_source(data_source)
+
+To remove a data source:
+
+    TaxonReporter.remove_data_source(data_source)
+
+To get the full record (TaxonReporter.Record) for a taxon in a report:
+
+    record = report[name]
+
+To get the value for a field (String) from a record:
+
+    value = record["EOL:scientificName"]
+
+To get the String form of a TaxonReporter.Field:
+
+    s = field.to_s
+
+To get all available fields (Array of TaxonReporter.Fields) for a record:
+
+    fields = record.fields
+
+## Planned Sources
+
+EOL,
+GBIF,
+Wikipedia,
+Index Fungorum,
+MycoBank,
+Mushroom Observer,
+MycoPortal

data/Rakefile

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+require "bundler/gem_tasks"
+require 'rspec/core'
+require 'rspec/core/rake_task'
+
+task :default => :spec
+
+RSpec::Core::RakeTask.new do |t|
+  t.pattern = 'spec/**/*spec.rb'
+end

data/fixtures/webmock/he_24935172

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data/fixtures/webmock/he_24935173

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+Server: nginx/1.1.19
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data/fixtures/webmock/he_46598317

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+Server: nginx/1.1.19
+Content-Type: application/json; charset=utf-8
+Status: 200 OK
+Cache-Control: max-age=86400, public
+X-UA-Compatible: IE=Edge,chrome=1
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data/fixtures/webmock/he_46598318

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data/fixtures/webmock/he_49222053

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+HTTP/1.1 200 OK
+Server: nginx/1.1.19
+Content-Type: application/json; charset=utf-8
+Status: 200 OK
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data/fixtures/webmock/he_49222054

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data/fixtures/webmock/he_49222055

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+HTTP/1.1 200 OK
+Server: nginx/1.1.19
+Content-Type: application/json; charset=utf-8
+Status: 200 OK
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data/fixtures/webmock/he_49222056

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data/fixtures/webmock/he_49222057

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data/fixtures/webmock/he_49222058

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