taverna-t2flow 0.1.1 → 0.1.2

data/README.rdoc

@@ -1,7 +1,7 @@
 = Taverna[http://taverna.sourceforge.net] 2 Interaction Gem
 
-Authors::       Emmanuel Tagarira, David Withers
-Version::       0.1.1
+Authors::       Mannie Tagarira, David Withers
+Version::       0.1.2
 Contact::       mailto:mannie@mygrid.org.uk
 URL::           http://taverna.sourceforge.net/
 Licence::       LGPL 3 (See LICENCE or http://www.gnu.org/licenses/lgpl.html)
@@ -13,8 +13,6 @@ Copyright::     (c) 2008-2009 University of Manchester, UK
 
 This is a Ruby library to support the interaction with Taverna[http://taverna.sourceforge.net] version 2 workflows (T2Flows).  This relies on the functionality provided by the libxml library.  To be able to utilise this gem to its full potential, you will need to have the following installed on your system.
 - GraphViz[http://www.graphviz.org/Download.php] (a graph visualization package)
-- Rdoc gem
-- Darkfish-Rdoc gem
 
 
 
@@ -25,14 +23,8 @@ Much like the Taverna[http://taverna.sourceforge.net] 1 Scufl model, T2Flows con
 
 
 == Installation
-To install the gems required by the Taverna 2 gem library, type into your command prompt:
-  [sudo] gem install libxml-ruby
-  [sudo] gem install rdoc
-  [sudo] gem install darkfish-rdoc
-
-When you have the required gems on your system, you may install this gem using the following commands:
-  gem sources -a http://gems.github.com
-  [sudo] gem install mannie-taverna-t2flow
+To install the Taverna 2 gem, type into your command prompt:
+  [sudo] gem install taverna-t2flow
 
 
 

data/lib/t2flow/dot.rb

@@ -15,8 +15,9 @@ module T2Flow
       'apiconsumer' => 'palegreen',
       'beanshell' => 'burlywood2',
       'biomart' => 'lightcyan2',                      
-      'local' => 'mediumorchid2',
+      'localworker' => 'mediumorchid2',
       'biomobywsdl' => 'darkgoldenrod1',
+      'biomoby' => 'darkgoldenrod1',
       'biomobyobject' => 'gold',
       'biomobyparser' => 'white',
       'inferno' => 'violetred1',
@@ -25,12 +26,15 @@ module T2Flow
       'rserv' => 'lightgoldenrodyellow',
       'seqhound' => '#836fff',
       'soaplabwsdl' => 'lightgoldenrodyellow',
+      'soaplab' => 'lightgoldenrodyellow',
       'stringconstant' => 'lightsteelblue',
       'talisman' => 'plum2',
       'bsf' => 'burlywood2',
       'abstractprocessor' => 'lightgoldenrodyellow',
+      'xmlsplitter' => 'gold',
       'rshell' => 'lightgoldenrodyellow',
       'arbitrarywsdl' => 'darkolivegreen3',
+      'wsdl' => 'darkolivegreen3',
       'workflow' => 'crimson'}
     
     @@fill_colours = %w{white aliceblue antiquewhite beige}

data/lib/t2flow/parser.rb

@@ -230,6 +230,8 @@ module T2Flow
     end
     
     def add_annotation(dataflow, annotation) # :nodoc:
+      return if annotation.nil? || annotation.empty?
+      
       node = LibXML::XML::Parser.string("#{annotation}").parse
       content_node = node.find_first("//annotationBean")
       content = content_node.child.next.content

metadata

@@ -1,21 +1,21 @@
 --- !ruby/object:Gem::Specification 
 name: taverna-t2flow
 version: !ruby/object:Gem::Version 
-  hash: 25
+  hash: 31
   prerelease: false
   segments: 
   - 0
   - 1
-  - 1
-  version: 0.1.1
+  - 2
+  version: 0.1.2
 platform: ruby
 authors: 
-- Emmanuel Tagarira
+- Mannie Tagarira
 - David Withers
 autorequire: t2flow
 bindir: bin
 cert_chain: 
-date: 2009-09-16 00:00:00 +01:00
+date: 2010-07-22 00:00:00 +01:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -34,38 +34,6 @@ dependencies:
         version: 1.1.3
   type: :runtime
   version_requirements: *id001
-- !ruby/object:Gem::Dependency 
-  name: rdoc
-  prerelease: false
-  requirement: &id002 !ruby/object:Gem::Requirement 
-    none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        hash: 25
-        segments: 
-        - 2
-        - 4
-        - 3
-        version: 2.4.3
-  type: :runtime
-  version_requirements: *id002
-- !ruby/object:Gem::Dependency 
-  name: darkfish-rdoc
-  prerelease: false
-  requirement: &id003 !ruby/object:Gem::Requirement 
-    none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        hash: 25
-        segments: 
-        - 1
-        - 1
-        - 5
-        version: 1.1.5
-  type: :runtime
-  version_requirements: *id003
 description: This a gem developed by myGrid for the purpose of interacting with Taverna 2 workflows.  An example use would be the image genaration for the model representing Taverna 2 workflows as used in myExperiment.
 email: mannie@mygrid.org.uk
 executables: []