tasci_merger 0.0.1 → 0.1.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: fd3e333e1f5e530dc5d787a353b3e0ca9d93b0f9
-  data.tar.gz: 5bf68b195adba0290cbd0342d00d7283149eb235
+  metadata.gz: 3ee0a6748202ef6011e7ea7874beba30d2c6793e
+  data.tar.gz: 92226f6f49b06a61da8048f56a9a0b19bb30383e
 SHA512:
-  metadata.gz: 591c91f176a71103eb577b8d147cd40a2a6a20519077dde6a4b26f8c6b93c861750678e46960ae80f365d158cc0acb6ef04c06f11a5431b2052aa2e334667a18
-  data.tar.gz: a58b5d6d11dadf6e2685348da713c826ef91380352202864b858c3c96c5d9b6ddcf32e92657e758afd182b901fabba0bc84a1a611dee35a73c6520e14fae264c
+  metadata.gz: 5f05efeb325926df9aa0953367cbb0626598ff22234201e4557614566c20e9ae6a046c0d4ca0960ba5ce4723899a64fe0657688b4b229c1249d13d3f6e0952c5
+  data.tar.gz: 2b456248a907b62e02c8ea2a9e0054500ada0b222ecb83e7c1fba65d988f650ca296a473de0b01d438ce876a91226639d9608c1ed97d0130b6ea530ed5dedb24

data/README.md

@@ -71,7 +71,7 @@ The command creates a master file and merged file in the output directory.
 **Example Usage:**
 
 ```
-  tasci_merger 3441GX X:/TasciFilesFor3441GX C:/Circadian
+  merge_tasci 3441GX X:/TasciFilesFor3441GX C:/Circadian
 ```
 
 This command would create the 2 files in the `C:/Circadian` directory.

data/lib/tasci_merger.rb

@@ -122,6 +122,9 @@ class TasciMerger
     merged_file = CSV.open(File.join(@output_directory, "#{@subject_code}_merged_#{Time.zone.now.strftime("%Y%m%d")}.csv"), "wb")
     merged_file << %w(SUBJECT_CODE FILE_NAME_SLEEP_WAKE_EPISODE LABTIME SLEEP_STAGE LIGHTS_OFF_ON_FLAG SEM_FLAG)
 
+    simple_merged_file = CSV.open(File.join(@output_directory, "#{@subject_code}_merged_simple_#{Time.zone.now.strftime("%Y%m%d")}.csv"), "wb")
+    simple_merged_file << %w(SLEEP_STAGE LABTIME)
+
     previous_first_labtime = nil
     previous_last_labtime = nil
 
@@ -246,16 +249,60 @@ class TasciMerger
         # 0      No Slow Eye Movement
         sem_event = (fields[7] =~ /SEM/ ? 1 : 0)
 
-        # Previous Effort:
-        #line_time = Time.zone.local(file_info[:record_full_time].year, file_info[:record_full_time].month, file_info[:record_full_time].day, fields[4].to_i, fields[5].to_i, fields[6].to_i)
-        #line_labtime = Labtime.parse(line_time)
+
+
+
+        # Alternate Coding:
+        # 0 - UNDEF
+        # 1 - N1
+        # 2 - N2
+        # 3 - N3
+        # 4 - 4
+        # 5 - Wake
+        # 6 - REM
+        # 7 - MT
+        # 8 - Sleep Onset (LIGHTS OFF)
+        # 9 - Lights On
+
+        ### SLEEP STAGE, LABTIME
+        simple_line_event = nil
+        if fields[8] == "Wake"
+          simple_line_event = 5
+        elsif fields[8] == "Undefined"
+          simple_line_event = 0
+        elsif fields[8] == "N1"
+          simple_line_event = 1
+        elsif fields[8] == "N2"
+          simple_line_event = 2
+        elsif fields[8] == "N3"
+          simple_line_event = 3
+        elsif fields[8] == "4"
+          simple_line_event = 4
+        elsif fields[8] == "REM"
+          simple_line_event = 6
+        elsif fields[8] == "MVT"
+          simple_line_event = 7
+        else
+          raise StandardError, "Cannot map the following event: #{fields[8]}"
+        end
+
+        if sleep_period == 1
+          simple_line_event = 8
+        elsif sleep_period == 2
+          simple_line_event = 9
+        end
+
+
+
+
 
         first_labtime = line_labtime if first_labtime.nil?
         last_labtime = line_labtime
 
         output_line = [@subject_code.upcase, file_info[:sleep_wake_episode], line_labtime.to_decimal, line_event, sleep_period, sem_event]
+        simple_output_line = [simple_line_event, line_labtime.to_decimal]
         merged_file << output_line
-
+        simple_merged_file << simple_output_line
 
         #MY_LOG.info fields
       end
@@ -270,6 +317,7 @@ class TasciMerger
       previous_last_labtime = last_labtime
     end
     merged_file.close
+    simple_merged_file.close
   end
 
 end

data/tasci_merger.gemspec

@@ -1,6 +1,6 @@
 Gem::Specification.new do |s|
   s.name        = 'tasci_merger'
-  s.version     = '0.0.1'
+  s.version     = '0.1.0'
   s.date        = '2015-02-06'
   s.summary     = "Merger utility for TASCI scored sleep files."
   s.description = "Merger utility for TASCI scored sleep files, built for the Division of Sleep and Circadian Disorders at BWH."
@@ -16,6 +16,6 @@ Gem::Specification.new do |s|
   s.required_ruby_version = '>= 2.1.0'
 
   s.add_dependency "activesupport", '~> 4.2', '>= 4.2.0'
-  s.add_dependency "tzinfo-data"
+  s.add_dependency "tzinfo-data", '~> 1'
 end
 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: tasci_merger
 version: !ruby/object:Gem::Version
-  version: 0.0.1
+  version: 0.1.0
 platform: ruby
 authors:
 - Piotr Mankowski
@@ -34,16 +34,16 @@ dependencies:
   name: tzinfo-data
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '1'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '1'
 description: Merger utility for TASCI scored sleep files, built for the Division of
   Sleep and Circadian Disorders at BWH.
 email: pmankowski@partners.org