tao_rdfizer 0.9.13 → 0.10

checksums.yaml

@@ -1,7 +1,7 @@
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data/lib/tao_rdfizer/tao_rdfizer.rb

@@ -35,6 +35,7 @@ class TAO::RDFizer
 		end
 
 		denotations = []
+		attributes = []
 		relations = []
 		spans = []
 
@@ -47,25 +48,36 @@ class TAO::RDFizer
 			end
 
 			# denotations and relations
-			_denotations = annotations[:denotations]
-			_relations = annotations[:relations]
-			_denotations = [] if _denotations.nil?
-			_relations = [] if _relations.nil?
+			_denotations = annotations[:denotations] || []
+			_attributes = annotations[:attributes] || []
+			_relations = annotations[:relations] || []
 			if @mode == :spans && annotations.has_key?(:tracks)
 				annotations[:tracks].each do |track|
 					_denotations += track[:denotations]
+					_attributes += track[:attributes]
 					_relations += track[:relations]
 				end
 			end
 
 			begin
 				if @mode == :annotations
+					# index attributes
+					attributesh = _attributes.inject({}) do |h, a|
+						if a[:pred].end_with?('_id')
+							subj = a[:subj]
+							h[subj] = [] unless h.has_key? subj
+							h[subj] << a[:obj]
+						end
+						h
+					end
+
 					# denotations preprocessing
 					_denotations.each do |d|
 						span_uri = "<#{text_uri}/spans/#{d[:span][:begin]}-#{d[:span][:end]}>"
 						d[:span_uri] = span_uri
 						d[:obj_uri] = "#{prefix_for_this}:#{text_id}-#{d[:id]}"
-						d[:cls_uri] = find_uri(d[:obj], namespaces, prefix_for_this)
+						class_uris = attributesh[d[:id]].push(d[:obj])
+						d[:class_uris] = class_uris.map{|uri| find_uri(uri, namespaces, prefix_for_this)}
 					rescue ArgumentError => e
 						raise ArgumentError, "[#{sourcedb}-#{sourceid}-#{d[:id]}] " + e.message
 					end
@@ -101,7 +113,7 @@ class TAO::RDFizer
 					s[:text] = text[s[:begin] ... s[:end]]
 				end
 
-				# index
+				# index spans
 				spanh = _spans.inject({}){|r, s| r[s[:span_uri]] = s; r}
 
 				# add denotation information
@@ -194,7 +206,7 @@ class TAO::RDFizer
 	ERB_ANNOTATIONS_TTL = <<~HEREDOC
 		<% denotations.each do |d| -%>
 		<%= d[:obj_uri] %> tao:denoted_by <%= d[:span_uri] %> ;
-			rdf:type <%= d[:cls_uri] %> .
+		<%= d[:class_uris].map{|c| "\trdf:type " + c}.join(" ;\n") + " ." %>
 		<% end -%>
 		<%# relations -%>
 		<% relations.each do |r| -%>

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: tao_rdfizer
 version: !ruby/object:Gem::Version
-  version: 0.9.13
+  version: '0.10'
 platform: ruby
 authors:
 - Jin-Dong Kim
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2020-04-06 00:00:00.000000000 Z
+date: 2020-12-20 00:00:00.000000000 Z
 dependencies: []
 description: It uses TAO (text annotation ontology) for representation of annotations
   to text.
@@ -40,8 +40,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubyforge_project: 
-rubygems_version: 2.7.9
+rubygems_version: 3.0.8
 signing_key: 
 specification_version: 4
 summary: A RDF statement generator for annotations in the PubAnnotation JSON format.